Gene annotation
Transcriptome id Sobic.003G338500.1
Synonym Sb03g038260
Functional annotation endoplasmic reticulum-Golgi intermediate compartment protein 3, putative, expressed
UniProt C5XNA7
Pfam PF13850 PF07970
Panther DB PTHR10984 PTHR10984:SF32
NCBI CDD KOG2667; COPII vesicle protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G22290 : Endoplasmic reticulum vesicle transporter protein
RAP-DB (Rice) LOC_Os03g57100.1 : endoplasmic reticulum-Golgi intermediate compartment protein 3, putative, expressed
MaizeGDB (Corn) Zm00025a027047 , Zm00025a039765 , Zm00025a040452 , Zm00025a047311 , Zm00025a020052 , Zm00025a054288
Brachypodium KQK12879
Barley HORVU5Hr1G103070.1 , HORVU5Hr1G103070.2 , HORVU5Hr1G103070.3
Wheat TraesCS5B02G424400 , TraesCS5B02G424400 , TraesCS5A02G422400 , TraesCS5A02G422400 , TraesCS5D02G430600 , TraesCS5D02G430600
Populus -


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cDNA sequences
Sobic.003G338500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G223300 CDP-alcohol phosphatidyltransferase, putative, expressed K00999: CDP-diacylglycerol--inositol 3-phosphatidyltransferase
2 Sobic.010G261600 ubiquitin interaction motif family protein, expressed -
3 Sobic.010G020400 HEAT repeat family protein, putative, expressed K03456: serine/threonine-protein phosphatase 2A regulatory subunit A
4 Sobic.004G275700 adaptor complexes medium subunit family domain containing protein, expressed K11826: AP-2 complex subunit mu-1
5 Sobic.008G055900 transmembrane 9 superfamily member, putative, expressed K17087: transmembrane 9 superfamily member 3
6 Sobic.009G192000 transcription initiation factor IIF beta subunit, putative, expressed K03139: TFIIF2, GTF2F2, transcription initiation factor TFIIF subunit beta
7 Sobic.009G224000 OsQSOXL1 quiescin-sulfhydryl oxidase-like OsQSOXL1, expressed K10758: thiol oxidase
8 Sobic.001G049400 OsPP2Ac-2 - Phosphatase 2A isoform 2 belonging to family 2, expressed K04382: serine/threonine-protein phosphatase 2A catalytic subunit
9 Sobic.002G008800 PTEN, putative, expressed K01110: phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN
10 Sobic.004G206700 vesicle transport protein GOT1B, putative, expressed -
11 Sobic.010G002400 glutamine cyclotransferase precursor, putative, expressed -
12 Sobic.001G199100 peptidase, M24 family protein, putative, expressed K01265: methionyl aminopeptidase
13 Sobic.002G262900 farnesyltransferase/geranylgeranyltransferase type-1 subunitalpha, putative, expressed K05955: protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha
14 Sobic.009G149500 coiled-coil domain-containing protein 47 precursor, putative, expressed -
15 Sobic.009G117500 lipase precursor, putative, expressed -
16 Sobic.003G374000 ubiquitin-like domain-containing CTD phosphatase 1, putative, expressed K17618: ubiquitin-like domain-containing CTD phosphatase 1
17 Sobic.009G075800 serine/threonine protein phosphatase 5, putative, expressed K04460: serine/threonine-protein phosphatase 5
18 Sobic.002G020700 WD domain, G-beta repeat domain containing protein, expressed K14018: PLAA, DOA1, phospholipase A-2-activating protein
19 Sobic.002G303600 -(PubMedID : 29147737)@RIN3, putative, expressed K10636: AMFR, autocrine motility factor receptor
20 Sobic.007G167900 signal peptide peptidase domain containing protein, expressed K09598: signal peptide peptidase-like 3


Gene co-expression network
sample Sobic003G338500 Sobic003G338500 Sobic010G223300 Sobic010G223300 Sobic003G338500--Sobic010G223300 Sobic010G261600 Sobic010G261600 Sobic003G338500--Sobic010G261600 Sobic010G020400 Sobic010G020400 Sobic003G338500--Sobic010G020400 Sobic004G275700 Sobic004G275700 Sobic003G338500--Sobic004G275700 Sobic008G055900 Sobic008G055900 Sobic003G338500--Sobic008G055900 Sobic009G192000 Sobic009G192000 Sobic003G338500--Sobic009G192000 Sobic009G224000 Sobic009G224000 Sobic003G338500--Sobic009G224000 Sobic001G049400 Sobic001G049400 Sobic003G338500--Sobic001G049400 Sobic002G008800 Sobic002G008800 Sobic003G338500--Sobic002G008800 Sobic010G223300--Sobic008G055900 Sobic001G449900 Sobic001G449900 Sobic010G223300--Sobic001G449900 Sobic002G020700 Sobic002G020700 Sobic010G223300--Sobic002G020700 Sobic010G223300--Sobic003G338500 Sobic006G260500 Sobic006G260500 Sobic010G223300--Sobic006G260500 Sobic004G092500 Sobic004G092500 Sobic010G223300--Sobic004G092500 Sobic010G223300--Sobic010G020400 Sobic010G223300--Sobic002G008800 Sobic006G180000 Sobic006G180000 Sobic010G223300--Sobic006G180000 Sobic010G261600--Sobic003G338500 Sobic002G303600 Sobic002G303600 Sobic010G261600--Sobic002G303600 Sobic010G261600--Sobic002G008800 Sobic004G228800 Sobic004G228800 Sobic010G261600--Sobic004G228800 Sobic004G323700 Sobic004G323700 Sobic010G261600--Sobic004G323700 Sobic002G262900 Sobic002G262900 Sobic010G261600--Sobic002G262900 Sobic009G228700 Sobic009G228700 Sobic010G261600--Sobic009G228700 Sobic010G261600--Sobic004G275700 Sobic010G261600--Sobic010G020400 Sobic010G020400--Sobic002G020700 Sobic010G020400--Sobic001G049400 Sobic010G020400--Sobic003G338500 Sobic001G014800 Sobic001G014800 Sobic010G020400--Sobic001G014800 Sobic010G020400--Sobic002G008800 Sobic010G020400--Sobic008G055900 Sobic008G033500 Sobic008G033500 Sobic010G020400--Sobic008G033500 Sobic001G333100 Sobic001G333100 Sobic010G020400--Sobic001G333100 Sobic010G020400--Sobic010G223300 Sobic001G199100 Sobic001G199100 Sobic004G275700--Sobic001G199100 Sobic001G091300 Sobic001G091300 Sobic004G275700--Sobic001G091300 Sobic009G075800 Sobic009G075800 Sobic004G275700--Sobic009G075800 Sobic004G275700--Sobic002G262900 Sobic001G007000 Sobic001G007000 Sobic004G275700--Sobic001G007000 Sobic004G275700--Sobic010G020400 Sobic004G275700--Sobic002G008800 Sobic003G365300 Sobic003G365300 Sobic004G275700--Sobic003G365300 Sobic003G012200 Sobic003G012200 Sobic004G275700--Sobic003G012200 Sobic008G055900--Sobic002G020700 Sobic008G055900--Sobic010G223300 Sobic008G103300 Sobic008G103300 Sobic008G055900--Sobic008G103300 Sobic008G055900--Sobic010G020400 Sobic006G136400 Sobic006G136400 Sobic008G055900--Sobic006G136400 Sobic001G447300 Sobic001G447300 Sobic008G055900--Sobic001G447300 Sobic008G085700 Sobic008G085700 Sobic008G055900--Sobic008G085700 Sobic006G056200 Sobic006G056200 Sobic008G055900--Sobic006G056200 Sobic008G129600 Sobic008G129600 Sobic008G055900--Sobic008G129600 Sobic001G031100 Sobic001G031100 Sobic009G192000--Sobic001G031100 Sobic007G167900 Sobic007G167900 Sobic009G192000--Sobic007G167900 Sobic009G192000--Sobic010G020400 Sobic003G349300 Sobic003G349300 Sobic009G192000--Sobic003G349300 Sobic009G192000--Sobic001G014800 Sobic009G192000--Sobic003G338500 Sobic009G192000--Sobic006G180000 Sobic010G205300 Sobic010G205300 Sobic009G192000--Sobic010G205300 Sobic003G374000 Sobic003G374000 Sobic009G192000--Sobic003G374000 Sobic009G224000--Sobic003G338500 Sobic010G243400 Sobic010G243400 Sobic009G224000--Sobic010G243400 Sobic007G056100 Sobic007G056100 Sobic009G224000--Sobic007G056100 Sobic002G361300 Sobic002G361300 Sobic009G224000--Sobic002G361300 Sobic004G130400 Sobic004G130400 Sobic009G224000--Sobic004G130400 Sobic009G224000--Sobic010G261600 Sobic003G394200 Sobic003G394200 Sobic009G224000--Sobic003G394200 Sobic003G270600 Sobic003G270600 Sobic009G224000--Sobic003G270600 Sobic008G173400 Sobic008G173400 Sobic009G224000--Sobic008G173400 Sobic001G049400--Sobic010G020400 Sobic001G465400 Sobic001G465400 Sobic001G049400--Sobic001G465400 Sobic001G049400--Sobic008G085700 Sobic004G078700 Sobic004G078700 Sobic001G049400--Sobic004G078700 Sobic001G211900 Sobic001G211900 Sobic001G049400--Sobic001G211900 Sobic003G302200 Sobic003G302200 Sobic001G049400--Sobic003G302200 Sobic001G049400--Sobic008G055900 Sobic001G049400--Sobic003G338500 Sobic007G173700 Sobic007G173700 Sobic001G049400--Sobic007G173700 Sobic002G008800--Sobic010G261600 Sobic002G008800--Sobic010G020400 Sobic002G008800--Sobic002G262900 Sobic002G008800--Sobic010G223300 Sobic001G382600 Sobic001G382600 Sobic002G008800--Sobic001G382600 Sobic004G177300 Sobic004G177300 Sobic002G008800--Sobic004G177300 Sobic002G008800--Sobic004G275700 Sobic002G008800--Sobic001G333100 Sobic002G008800--Sobic008G055900
Octagon: transcription factors


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