Gene annotation
Transcriptome id Sobic.002G303600.1
Synonym Sb02g033390, Zinc finger domain with ubiquitin transferase activity, RIN2
Functional annotation - (PubMedID : 29147737)
RIN3, putative, expressed
UniProt C5X8L0
Pfam PF02845 PF13639
Panther DB PTHR22763 PTHR22763:SF51
NCBI CDD KOG0802; E3 ubiquitin ligase
KEGG Orthology K10636; AMFR, autocrine motility factor receptor
Gene Ontology GO:0005515; protein binding GO:0008270zinc ion binding


Orthologs (automatic annotation)
TAIR AT4G25230 : RPM1 interacting protein 2
RAP-DB (Rice) LOC_Os07g30100.1 : RIN3, putative, expressed
MaizeGDB (Corn) Zm00025a014632 , Zm00025a048049
Brachypodium KQK16231 , KQK16230 , PNT75107 , KQK16229
Barley HORVU2Hr1G053110.2 , HORVU2Hr1G053110.3 , HORVU2Hr1G053110.1 , HORVU2Hr1G053110.4 , HORVU2Hr1G053110.5 , HORVU2Hr1G053110.6
Wheat TraesCS2A02G227400 , TraesCS2A02G227400 , TraesCS2A02G227400 , TraesCS2A02G227400 , TraesCS2B02G255300 , TraesCS2D02G235300 , TraesCS2D02G235300 , TraesCS2D02G235300 , TraesCS2D02G235300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G261600 ubiquitin interaction motif family protein, expressed -
2 Sobic.004G323700 zinc finger family protein, putative, expressed -
3 Sobic.004G178200 ligatin, putative, expressed K15027: translation initiation factor 2D
4 Sobic.006G180000 syntaxin-18, putative, expressed K08492: syntaxin 18
5 Sobic.007G218000 chloride transporter, chloride channel family, putative, expressed -
6 Sobic.004G028100 expressed protein -
7 Sobic.003G422900 RNA recognition motif containing protein, putative, expressed K14411: RNA-binding protein Musashi
8 Sobic.009G092400 zinc finger, C3HC4 type family protein, expressed -
9 Sobic.004G003401 - -
10 Sobic.002G262900 farnesyltransferase/geranylgeranyltransferase type-1 subunitalpha, putative, expressed K05955: protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha
11 Sobic.007G132100 myrosinase precursor, putative, expressed -
12 Sobic.010G020400 HEAT repeat family protein, putative, expressed K03456: serine/threonine-protein phosphatase 2A regulatory subunit A
13 Sobic.003G264100 - K10843: ERCC3, DNA excision repair protein ERCC-3
14 Sobic.006G136400 eukaryotic initiation factor iso-4F subunit p82-34, putative, expressed K03260: translation initiation factor 4G
15 Sobic.002G371300 peroxisome assembly protein, putative, expressed K13346: peroxin-10
16 Sobic.001G091300 HTH DNA-binding protein, putative, expressed -
17 Sobic.006G196300 glycosyl transferase, group 1 domain containing protein, expressed K03843: alpha-1,3/alpha-1,6-mannosyltransferase
18 Sobic.009G124700 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
19 Sobic.003G155900 mov34/MPN/PAD-1 family protein, expressed K11866: STAMBP, STAM-binding protein
20 Sobic.002G117400 expressed protein -


Gene co-expression network
sample Sobic002G303600 Sobic002G303600 Sobic010G261600 Sobic010G261600 Sobic002G303600--Sobic010G261600 Sobic004G323700 Sobic004G323700 Sobic002G303600--Sobic004G323700 Sobic004G178200 Sobic004G178200 Sobic002G303600--Sobic004G178200 Sobic006G180000 Sobic006G180000 Sobic002G303600--Sobic006G180000 Sobic007G218000 Sobic007G218000 Sobic002G303600--Sobic007G218000 Sobic004G028100 Sobic004G028100 Sobic002G303600--Sobic004G028100 Sobic003G422900 Sobic003G422900 Sobic002G303600--Sobic003G422900 Sobic009G092400 Sobic009G092400 Sobic002G303600--Sobic009G092400 Sobic004G003401 Sobic004G003401 Sobic002G303600--Sobic004G003401 Sobic003G338500 Sobic003G338500 Sobic010G261600--Sobic003G338500 Sobic010G261600--Sobic002G303600 Sobic002G008800 Sobic002G008800 Sobic010G261600--Sobic002G008800 Sobic004G228800 Sobic004G228800 Sobic010G261600--Sobic004G228800 Sobic010G261600--Sobic004G323700 Sobic002G262900 Sobic002G262900 Sobic010G261600--Sobic002G262900 Sobic009G228700 Sobic009G228700 Sobic010G261600--Sobic009G228700 Sobic004G275700 Sobic004G275700 Sobic010G261600--Sobic004G275700 Sobic010G020400 Sobic010G020400 Sobic010G261600--Sobic010G020400 Sobic002G117400 Sobic002G117400 Sobic004G323700--Sobic002G117400 Sobic004G323700--Sobic007G218000 Sobic004G323700--Sobic002G303600 Sobic004G323700--Sobic010G261600 Sobic004G323700--Sobic004G228800 Sobic010G278200 Sobic010G278200 Sobic004G323700--Sobic010G278200 Sobic006G174850 Sobic006G174850 Sobic004G323700--Sobic006G174850 Sobic006G131000 Sobic006G131000 Sobic004G323700--Sobic006G131000 Sobic004G039600 Sobic004G039600 Sobic004G323700--Sobic004G039600 Sobic007G132100 Sobic007G132100 Sobic004G178200--Sobic007G132100 Sobic004G178200--Sobic007G218000 Sobic006G136400 Sobic006G136400 Sobic004G178200--Sobic006G136400 Sobic004G178200--Sobic006G131000 Sobic006G126100 Sobic006G126100 Sobic004G178200--Sobic006G126100 Sobic006G012500 Sobic006G012500 Sobic004G178200--Sobic006G012500 Sobic010G116600 Sobic010G116600 Sobic004G178200--Sobic010G116600 Sobic004G178200--Sobic002G303600 Sobic004G178200--Sobic004G039600 Sobic006G180000--Sobic002G303600 Sobic002G047700 Sobic002G047700 Sobic006G180000--Sobic002G047700 Sobic003G264100 Sobic003G264100 Sobic006G180000--Sobic003G264100 Sobic010G223300 Sobic010G223300 Sobic006G180000--Sobic010G223300 Sobic006G180000--Sobic009G092400 Sobic001G007000 Sobic001G007000 Sobic006G180000--Sobic001G007000 Sobic006G180000--Sobic010G020400 Sobic004G092500 Sobic004G092500 Sobic006G180000--Sobic004G092500 Sobic006G180000--Sobic004G028100 Sobic007G218000--Sobic007G132100 Sobic004G072100 Sobic004G072100 Sobic007G218000--Sobic004G072100 Sobic002G112700 Sobic002G112700 Sobic007G218000--Sobic002G112700 Sobic007G218000--Sobic006G131000 Sobic009G044800 Sobic009G044800 Sobic007G218000--Sobic009G044800 Sobic010G204400 Sobic010G204400 Sobic007G218000--Sobic010G204400 Sobic007G218000--Sobic006G012500 Sobic009G249700 Sobic009G249700 Sobic007G218000--Sobic009G249700 Sobic007G218000--Sobic009G092400 Sobic004G028100--Sobic002G303600 Sobic004G028100--Sobic009G092400 Sobic004G028100--Sobic006G180000 Sobic004G028100--Sobic009G249700 Sobic004G028100--Sobic007G218000 Sobic003G173600 Sobic003G173600 Sobic004G028100--Sobic003G173600 Sobic010G243400 Sobic010G243400 Sobic004G028100--Sobic010G243400 Sobic001G449900 Sobic001G449900 Sobic004G028100--Sobic001G449900 Sobic004G028100--Sobic003G264100 Sobic003G422900--Sobic010G020400 Sobic003G155900 Sobic003G155900 Sobic003G422900--Sobic003G155900 Sobic003G422900--Sobic002G303600 Sobic009G164000 Sobic009G164000 Sobic003G422900--Sobic009G164000 Sobic003G422900--Sobic009G044800 Sobic001G392300 Sobic001G392300 Sobic003G422900--Sobic001G392300 Sobic004G257100 Sobic004G257100 Sobic003G422900--Sobic004G257100 Sobic002G256200 Sobic002G256200 Sobic003G422900--Sobic002G256200 Sobic008G082500 Sobic008G082500 Sobic003G422900--Sobic008G082500 Sobic009G092400--Sobic007G218000 Sobic005G160400 Sobic005G160400 Sobic009G092400--Sobic005G160400 Sobic009G092400--Sobic009G044800 Sobic009G092400--Sobic009G249700 Sobic007G125000 Sobic007G125000 Sobic009G092400--Sobic007G125000 Sobic004G209700 Sobic004G209700 Sobic009G092400--Sobic004G209700 Sobic009G092400--Sobic002G303600 Sobic009G092400--Sobic006G180000 Sobic009G092400--Sobic007G132100 Sobic004G003401--Sobic009G228700 Sobic004G003401--Sobic002G303600 Sobic001G091300 Sobic001G091300 Sobic004G003401--Sobic001G091300 Sobic004G003401--Sobic010G243400 Sobic004G003401--Sobic006G180000 Sobic003G312200 Sobic003G312200 Sobic004G003401--Sobic003G312200 Sobic001G114000 Sobic001G114000 Sobic004G003401--Sobic001G114000 Sobic009G041700 Sobic009G041700 Sobic004G003401--Sobic009G041700 Sobic006G200600 Sobic006G200600 Sobic004G003401--Sobic006G200600
Octagon: transcription factors


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