Gene annotation
Transcriptome id Sobic.004G323700.2,Sobic.004G323700.3,Sobic.004G323700.1
Synonym Sb04g035380
Functional annotation zinc finger family protein, putative, expressed
UniProt A0A194YSU0
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF173
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT4G32600 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os02g54624.1 : zinc finger family protein, putative, expressed
MaizeGDB (Corn) Zm00025a022400 , Zm00025a023195
Brachypodium KQK22981 , KQK22982 , KQK22983
Barley -
Wheat TraesCS6D02G328700 , TraesCS6D02G328700 , TraesCS6B02G379400 , TraesCS6B02G379400 , TraesCS6A02G346000 , TraesCS6B02G378600
Populus -


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cDNA sequences
Sobic.004G323700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G117400 expressed protein -
2 Sobic.007G218000 chloride transporter, chloride channel family, putative, expressed -
3 Sobic.002G303600 -(PubMedID : 29147737)@RIN3, putative, expressed K10636: AMFR, autocrine motility factor receptor
4 Sobic.010G261600 ubiquitin interaction motif family protein, expressed -
5 Sobic.004G228800 LMBR1 integral membrane protein, putative, expressed -
6 Sobic.010G278200 expressed protein -
7 Sobic.006G174850 - K15193: SPTY2D1, protein SPT2
8 Sobic.006G131000 expressed protein K11968: ariadne-1
9 Sobic.004G039600 proteasome/cyclosome repeat containing protein, expressed K03028: PSMD2, 26S proteasome regulatory subunit N1
10 Sobic.007G132100 myrosinase precursor, putative, expressed -
11 Sobic.002G295500 expressed protein -
12 Sobic.007G093800 expressed protein -
13 Sobic.009G092400 zinc finger, C3HC4 type family protein, expressed -
14 Sobic.003G352200 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
15 Sobic.009G044800 cullin, putative, expressed K03347: CUL1, cullin 1
16 Sobic.008G103300 vacuolar protein sorting-associated protein 26, putative, expressed K18466: vacuolar protein sorting-associated protein 26
17 Sobic.002G371300 peroxisome assembly protein, putative, expressed K13346: peroxin-10
18 Sobic.008G124900 heat shock protein DnaJ, putative, expressed -
19 Sobic.001G124200 ethylene receptor, putative, expressed K14509: ETR, ethylene receptor
20 Sobic.001G005600 CBS domain containing membrane protein, putative, expressed -


Gene co-expression network
sample Sobic004G323700 Sobic004G323700 Sobic002G117400 Sobic002G117400 Sobic004G323700--Sobic002G117400 Sobic007G218000 Sobic007G218000 Sobic004G323700--Sobic007G218000 Sobic002G303600 Sobic002G303600 Sobic004G323700--Sobic002G303600 Sobic010G261600 Sobic010G261600 Sobic004G323700--Sobic010G261600 Sobic004G228800 Sobic004G228800 Sobic004G323700--Sobic004G228800 Sobic010G278200 Sobic010G278200 Sobic004G323700--Sobic010G278200 Sobic006G174850 Sobic006G174850 Sobic004G323700--Sobic006G174850 Sobic006G131000 Sobic006G131000 Sobic004G323700--Sobic006G131000 Sobic004G039600 Sobic004G039600 Sobic004G323700--Sobic004G039600 Sobic002G117400--Sobic004G323700 Sobic007G093800 Sobic007G093800 Sobic002G117400--Sobic007G093800 Sobic007G167900 Sobic007G167900 Sobic002G117400--Sobic007G167900 Sobic010G020400 Sobic010G020400 Sobic002G117400--Sobic010G020400 Sobic002G117400--Sobic002G303600 Sobic002G008800 Sobic002G008800 Sobic002G117400--Sobic002G008800 Sobic008G083200 Sobic008G083200 Sobic002G117400--Sobic008G083200 Sobic010G020300 Sobic010G020300 Sobic002G117400--Sobic010G020300 Sobic009G192000 Sobic009G192000 Sobic002G117400--Sobic009G192000 Sobic007G132100 Sobic007G132100 Sobic007G218000--Sobic007G132100 Sobic004G072100 Sobic004G072100 Sobic007G218000--Sobic004G072100 Sobic002G112700 Sobic002G112700 Sobic007G218000--Sobic002G112700 Sobic007G218000--Sobic006G131000 Sobic009G044800 Sobic009G044800 Sobic007G218000--Sobic009G044800 Sobic010G204400 Sobic010G204400 Sobic007G218000--Sobic010G204400 Sobic006G012500 Sobic006G012500 Sobic007G218000--Sobic006G012500 Sobic009G249700 Sobic009G249700 Sobic007G218000--Sobic009G249700 Sobic009G092400 Sobic009G092400 Sobic007G218000--Sobic009G092400 Sobic002G303600--Sobic010G261600 Sobic002G303600--Sobic004G323700 Sobic004G178200 Sobic004G178200 Sobic002G303600--Sobic004G178200 Sobic006G180000 Sobic006G180000 Sobic002G303600--Sobic006G180000 Sobic002G303600--Sobic007G218000 Sobic004G028100 Sobic004G028100 Sobic002G303600--Sobic004G028100 Sobic003G422900 Sobic003G422900 Sobic002G303600--Sobic003G422900 Sobic002G303600--Sobic009G092400 Sobic004G003401 Sobic004G003401 Sobic002G303600--Sobic004G003401 Sobic003G338500 Sobic003G338500 Sobic010G261600--Sobic003G338500 Sobic010G261600--Sobic002G303600 Sobic010G261600--Sobic002G008800 Sobic010G261600--Sobic004G228800 Sobic010G261600--Sobic004G323700 Sobic002G262900 Sobic002G262900 Sobic010G261600--Sobic002G262900 Sobic009G228700 Sobic009G228700 Sobic010G261600--Sobic009G228700 Sobic004G275700 Sobic004G275700 Sobic010G261600--Sobic004G275700 Sobic010G261600--Sobic010G020400 Sobic004G261600 Sobic004G261600 Sobic004G228800--Sobic004G261600 Sobic004G228800--Sobic010G261600 Sobic004G228800--Sobic004G323700 Sobic004G228800--Sobic010G278200 Sobic004G236200 Sobic004G236200 Sobic004G228800--Sobic004G236200 Sobic004G228800--Sobic006G131000 Sobic005G177700 Sobic005G177700 Sobic004G228800--Sobic005G177700 Sobic007G056600 Sobic007G056600 Sobic004G228800--Sobic007G056600 Sobic003G126300 Sobic003G126300 Sobic004G228800--Sobic003G126300 Sobic010G147100 Sobic010G147100 Sobic010G278200--Sobic010G147100 Sobic009G138100 Sobic009G138100 Sobic010G278200--Sobic009G138100 Sobic010G130000 Sobic010G130000 Sobic010G278200--Sobic010G130000 Sobic001G124200 Sobic001G124200 Sobic010G278200--Sobic001G124200 Sobic006G033200 Sobic006G033200 Sobic010G278200--Sobic006G033200 Sobic005G126600 Sobic005G126600 Sobic010G278200--Sobic005G126600 Sobic003G118200 Sobic003G118200 Sobic010G278200--Sobic003G118200 Sobic003G316500 Sobic003G316500 Sobic010G278200--Sobic003G316500 Sobic008G124900 Sobic008G124900 Sobic010G278200--Sobic008G124900 Sobic006G174850--Sobic007G218000 Sobic006G174850--Sobic006G131000 Sobic006G174850--Sobic009G044800 Sobic001G273700 Sobic001G273700 Sobic006G174850--Sobic001G273700 Sobic003G379200 Sobic003G379200 Sobic006G174850--Sobic003G379200 Sobic005G062200 Sobic005G062200 Sobic006G174850--Sobic005G062200 Sobic001G263600 Sobic001G263600 Sobic006G174850--Sobic001G263600 Sobic006G174850--Sobic007G132100 Sobic006G240100 Sobic006G240100 Sobic006G174850--Sobic006G240100 Sobic006G131000--Sobic007G218000 Sobic006G131000--Sobic007G132100 Sobic006G163800 Sobic006G163800 Sobic006G131000--Sobic006G163800 Sobic006G131000--Sobic004G039600 Sobic001G096000 Sobic001G096000 Sobic006G131000--Sobic001G096000 Sobic006G131000--Sobic006G174850 Sobic010G275500 Sobic010G275500 Sobic006G131000--Sobic010G275500 Sobic001G369000 Sobic001G369000 Sobic006G131000--Sobic001G369000 Sobic006G131000--Sobic004G178200 Sobic004G039600--Sobic006G012500 Sobic004G039600--Sobic001G369000 Sobic004G039600--Sobic007G132100 Sobic008G099800 Sobic008G099800 Sobic004G039600--Sobic008G099800 Sobic006G126100 Sobic006G126100 Sobic004G039600--Sobic006G126100 Sobic010G053800 Sobic010G053800 Sobic004G039600--Sobic010G053800 Sobic004G039600--Sobic006G131000 Sobic001G534800 Sobic001G534800 Sobic004G039600--Sobic001G534800 Sobic007G120500 Sobic007G120500 Sobic004G039600--Sobic007G120500
Octagon: transcription factors


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