Gene annotation
Transcriptome id Sobic.010G261600.1
Synonym Sb10g029790
Functional annotation ubiquitin interaction motif family protein, expressed
UniProt C5Z9F6
Pfam PF04424
Panther DB PTHR18063
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G11860 : Protein of unknown function (DUF544)
RAP-DB (Rice) LOC_Os06g49800.1 : ubiquitin interaction motif family protein, expressed
MaizeGDB (Corn) Zm00025a047867 , Zm00025a041743 , Zm00025a039125 , Zm00025a018458
Brachypodium -
Barley HORVU7Hr1G095020.15 , HORVU7Hr1G095020.14 , HORVU7Hr1G095020.16 , HORVU7Hr1G095020.11 , HORVU7Hr1G095020.10 , HORVU7Hr1G095020.13 , HORVU7Hr1G095020.12 , HORVU7Hr1G095020.9 , HORVU7Hr1G095020.8 , HORVU7Hr1G095020.1 , HORVU7Hr1G095020.3 , HORVU7Hr1G095020.2 , HORVU7Hr1G095020.4 , HORVU7Hr1G095020.6
Wheat TraesCS7D02G399900 , TraesCS7A02G406200 , TraesCS7B02G306200 , TraesCS7B02G306200 , TraesCS7B02G306200
Populus -


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cDNA sequences
Sobic.010G261600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G338500 endoplasmic reticulum-Golgi intermediate compartment protein 3, putative, expressed -
2 Sobic.002G303600 -(PubMedID : 29147737)@RIN3, putative, expressed K10636: AMFR, autocrine motility factor receptor
3 Sobic.002G008800 PTEN, putative, expressed K01110: phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN
4 Sobic.004G228800 LMBR1 integral membrane protein, putative, expressed -
5 Sobic.004G323700 zinc finger family protein, putative, expressed -
6 Sobic.002G262900 farnesyltransferase/geranylgeranyltransferase type-1 subunitalpha, putative, expressed K05955: protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha
7 Sobic.009G228700 expressed protein -
8 Sobic.004G275700 adaptor complexes medium subunit family domain containing protein, expressed K11826: AP-2 complex subunit mu-1
9 Sobic.010G020400 HEAT repeat family protein, putative, expressed K03456: serine/threonine-protein phosphatase 2A regulatory subunit A
10 Sobic.010G243400 expressed protein -
11 Sobic.004G039600 proteasome/cyclosome repeat containing protein, expressed K03028: PSMD2, 26S proteasome regulatory subunit N1
12 Sobic.004G177300 SPRY-domain containing protein, putative, expressed -
13 Sobic.009G257200 CK1_CaseinKinase_1.8 - CK1 includes the casein kinase 1 kinases, expressed K02218: CSNK1, casein kinase 1
14 Sobic.010G064600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@LIM domain-containing protein, putative, expressed -
15 Sobic.003G087000 expressed protein -
16 Sobic.010G020300 spastin, putative, expressed K13254: spastin
17 Sobic.007G205900 uvrB/uvrC motif family protein, expressed -
18 Sobic.001G091300 HTH DNA-binding protein, putative, expressed -
19 Sobic.005G059600 WD domain, G-beta repeat domain containing protein, expressed -
20 Sobic.001G206900 vacuolar protein-sorting protein bro1, putative, expressed K12200: PDCD6IP, ALIX, programmed cell death 6-interacting protein


Gene co-expression network
sample Sobic010G261600 Sobic010G261600 Sobic003G338500 Sobic003G338500 Sobic010G261600--Sobic003G338500 Sobic002G303600 Sobic002G303600 Sobic010G261600--Sobic002G303600 Sobic002G008800 Sobic002G008800 Sobic010G261600--Sobic002G008800 Sobic004G228800 Sobic004G228800 Sobic010G261600--Sobic004G228800 Sobic004G323700 Sobic004G323700 Sobic010G261600--Sobic004G323700 Sobic002G262900 Sobic002G262900 Sobic010G261600--Sobic002G262900 Sobic009G228700 Sobic009G228700 Sobic010G261600--Sobic009G228700 Sobic004G275700 Sobic004G275700 Sobic010G261600--Sobic004G275700 Sobic010G020400 Sobic010G020400 Sobic010G261600--Sobic010G020400 Sobic010G223300 Sobic010G223300 Sobic003G338500--Sobic010G223300 Sobic003G338500--Sobic010G261600 Sobic003G338500--Sobic010G020400 Sobic003G338500--Sobic004G275700 Sobic008G055900 Sobic008G055900 Sobic003G338500--Sobic008G055900 Sobic009G192000 Sobic009G192000 Sobic003G338500--Sobic009G192000 Sobic009G224000 Sobic009G224000 Sobic003G338500--Sobic009G224000 Sobic001G049400 Sobic001G049400 Sobic003G338500--Sobic001G049400 Sobic003G338500--Sobic002G008800 Sobic002G303600--Sobic010G261600 Sobic002G303600--Sobic004G323700 Sobic004G178200 Sobic004G178200 Sobic002G303600--Sobic004G178200 Sobic006G180000 Sobic006G180000 Sobic002G303600--Sobic006G180000 Sobic007G218000 Sobic007G218000 Sobic002G303600--Sobic007G218000 Sobic004G028100 Sobic004G028100 Sobic002G303600--Sobic004G028100 Sobic003G422900 Sobic003G422900 Sobic002G303600--Sobic003G422900 Sobic009G092400 Sobic009G092400 Sobic002G303600--Sobic009G092400 Sobic004G003401 Sobic004G003401 Sobic002G303600--Sobic004G003401 Sobic002G008800--Sobic010G261600 Sobic002G008800--Sobic010G020400 Sobic002G008800--Sobic002G262900 Sobic002G008800--Sobic010G223300 Sobic001G382600 Sobic001G382600 Sobic002G008800--Sobic001G382600 Sobic004G177300 Sobic004G177300 Sobic002G008800--Sobic004G177300 Sobic002G008800--Sobic004G275700 Sobic001G333100 Sobic001G333100 Sobic002G008800--Sobic001G333100 Sobic002G008800--Sobic008G055900 Sobic004G261600 Sobic004G261600 Sobic004G228800--Sobic004G261600 Sobic004G228800--Sobic010G261600 Sobic004G228800--Sobic004G323700 Sobic010G278200 Sobic010G278200 Sobic004G228800--Sobic010G278200 Sobic004G236200 Sobic004G236200 Sobic004G228800--Sobic004G236200 Sobic006G131000 Sobic006G131000 Sobic004G228800--Sobic006G131000 Sobic005G177700 Sobic005G177700 Sobic004G228800--Sobic005G177700 Sobic007G056600 Sobic007G056600 Sobic004G228800--Sobic007G056600 Sobic003G126300 Sobic003G126300 Sobic004G228800--Sobic003G126300 Sobic002G117400 Sobic002G117400 Sobic004G323700--Sobic002G117400 Sobic004G323700--Sobic007G218000 Sobic004G323700--Sobic002G303600 Sobic004G323700--Sobic010G261600 Sobic004G323700--Sobic004G228800 Sobic004G323700--Sobic010G278200 Sobic006G174850 Sobic006G174850 Sobic004G323700--Sobic006G174850 Sobic004G323700--Sobic006G131000 Sobic004G039600 Sobic004G039600 Sobic004G323700--Sobic004G039600 Sobic002G262900--Sobic002G008800 Sobic002G262900--Sobic004G275700 Sobic010G164000 Sobic010G164000 Sobic002G262900--Sobic010G164000 Sobic006G136400 Sobic006G136400 Sobic002G262900--Sobic006G136400 Sobic002G262900--Sobic004G039600 Sobic010G205800 Sobic010G205800 Sobic002G262900--Sobic010G205800 Sobic002G262900--Sobic010G261600 Sobic003G155900 Sobic003G155900 Sobic002G262900--Sobic003G155900 Sobic001G124200 Sobic001G124200 Sobic002G262900--Sobic001G124200 Sobic004G066200 Sobic004G066200 Sobic009G228700--Sobic004G066200 Sobic009G207000 Sobic009G207000 Sobic009G228700--Sobic009G207000 Sobic001G091300 Sobic001G091300 Sobic009G228700--Sobic001G091300 Sobic001G323000 Sobic001G323000 Sobic009G228700--Sobic001G323000 Sobic001G356600 Sobic001G356600 Sobic009G228700--Sobic001G356600 Sobic006G249700 Sobic006G249700 Sobic009G228700--Sobic006G249700 Sobic006G148200 Sobic006G148200 Sobic009G228700--Sobic006G148200 Sobic003G312200 Sobic003G312200 Sobic009G228700--Sobic003G312200 Sobic009G228700--Sobic001G124200 Sobic001G199100 Sobic001G199100 Sobic004G275700--Sobic001G199100 Sobic004G275700--Sobic001G091300 Sobic009G075800 Sobic009G075800 Sobic004G275700--Sobic009G075800 Sobic004G275700--Sobic002G262900 Sobic001G007000 Sobic001G007000 Sobic004G275700--Sobic001G007000 Sobic004G275700--Sobic010G020400 Sobic004G275700--Sobic002G008800 Sobic003G365300 Sobic003G365300 Sobic004G275700--Sobic003G365300 Sobic003G012200 Sobic003G012200 Sobic004G275700--Sobic003G012200 Sobic002G020700 Sobic002G020700 Sobic010G020400--Sobic002G020700 Sobic010G020400--Sobic001G049400 Sobic010G020400--Sobic003G338500 Sobic001G014800 Sobic001G014800 Sobic010G020400--Sobic001G014800 Sobic010G020400--Sobic002G008800 Sobic010G020400--Sobic008G055900 Sobic008G033500 Sobic008G033500 Sobic010G020400--Sobic008G033500 Sobic010G020400--Sobic001G333100 Sobic010G020400--Sobic010G223300
Octagon: transcription factors


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