Gene annotation
Transcriptome id Sobic.004G228800.2,Sobic.004G228800.1
Synonym Sb04g027320
Functional annotation LMBR1 integral membrane protein, putative, expressed
UniProt A0A1Z5RNR1 , C5XYA9
Pfam PF04791
Panther DB PTHR21355 PTHR21355:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G65290 : LMBR1-like membrane protein
RAP-DB (Rice) LOC_Os02g52160.1 : LMBR1 integral membrane protein, putative, expressed
MaizeGDB (Corn) Zm00025a022166 , Zm00025a033132
Brachypodium PNT76202 , KQK01813 , KQK18967 , KQK18966 , KQK18965 , KQK18964 , KQK18963 , KQK18962 , KQK18961 , KQK18969 , KQK18968
Barley HORVU7Hr1G036420.13 , HORVU4Hr1G060680.2 , HORVU7Hr1G036420.10 , HORVU7Hr1G036420.11 , HORVU7Hr1G036420.12 , HORVU7Hr1G036420.14 , HORVU4Hr1G060680.1 , HORVU6Hr1G077660.4 , HORVU6Hr1G077660.5 , HORVU6Hr1G077660.2 , HORVU6Hr1G077660.3 , HORVU6Hr1G077660.1 , HORVU7Hr1G036420.9 , HORVU7Hr1G036420.3 , HORVU7Hr1G036420.6 , HORVU7Hr1G036420.7 , HORVU7Hr1G036420.4 , HORVU7Hr1G036420.5
Wheat TraesCS6A02G316100 , TraesCS6D02G295300 , TraesCS6B02G346500 , TraesCS6B02G346500
Populus -


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cDNA sequences
Sobic.004G228800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G261600 expressed protein -
2 Sobic.010G261600 ubiquitin interaction motif family protein, expressed -
3 Sobic.004G323700 zinc finger family protein, putative, expressed -
4 Sobic.010G278200 expressed protein -
5 Sobic.004G236200 SEC6, putative, expressed K06110: EXOC3, exocyst complex component 3
6 Sobic.006G131000 expressed protein K11968: ariadne-1
7 Sobic.005G177700 transmembrane protein 49, putative, expressed -
8 Sobic.007G056600 expressed protein -
9 Sobic.003G126300 OsRhmbd2 - Putative Rhomboid homologue, expressed -
10 Sobic.003G270600 adaptor complexes medium subunit family domain containing protein, expressed K12393: AP-1 complex subunit mu
11 Sobic.004G241900 OsDegp3 - Putative Deg protease homologue, expressed -
12 Sobic.004G178200 ligatin, putative, expressed K15027: translation initiation factor 2D
13 Sobic.006G077300 expressed protein K17637: EXOC2, exocyst complex component 2
14 Sobic.010G184300 glycosyltransferase family protein, putative, expressed K00771: protein xylosyltransferase
15 Sobic.003G209200 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
16 Sobic.010G235200 oral cancer overexpressed protein 1, putative, expressed -
17 Sobic.002G303600 -(PubMedID : 29147737)@RIN3, putative, expressed K10636: AMFR, autocrine motility factor receptor
18 Sobic.006G174850 - K15193: SPTY2D1, protein SPT2
19 Sobic.010G064600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@LIM domain-containing protein, putative, expressed -
20 Sobic.005G059600 WD domain, G-beta repeat domain containing protein, expressed -


Gene co-expression network
sample Sobic004G228800 Sobic004G228800 Sobic004G261600 Sobic004G261600 Sobic004G228800--Sobic004G261600 Sobic010G261600 Sobic010G261600 Sobic004G228800--Sobic010G261600 Sobic004G323700 Sobic004G323700 Sobic004G228800--Sobic004G323700 Sobic010G278200 Sobic010G278200 Sobic004G228800--Sobic010G278200 Sobic004G236200 Sobic004G236200 Sobic004G228800--Sobic004G236200 Sobic006G131000 Sobic006G131000 Sobic004G228800--Sobic006G131000 Sobic005G177700 Sobic005G177700 Sobic004G228800--Sobic005G177700 Sobic007G056600 Sobic007G056600 Sobic004G228800--Sobic007G056600 Sobic003G126300 Sobic003G126300 Sobic004G228800--Sobic003G126300 Sobic004G261600--Sobic004G228800 Sobic006G126100 Sobic006G126100 Sobic004G261600--Sobic006G126100 Sobic003G209200 Sobic003G209200 Sobic004G261600--Sobic003G209200 Sobic003G104000 Sobic003G104000 Sobic004G261600--Sobic003G104000 Sobic007G005500 Sobic007G005500 Sobic004G261600--Sobic007G005500 Sobic001G251200 Sobic001G251200 Sobic004G261600--Sobic001G251200 Sobic001G415300 Sobic001G415300 Sobic004G261600--Sobic001G415300 Sobic004G004300 Sobic004G004300 Sobic004G261600--Sobic004G004300 Sobic008G099800 Sobic008G099800 Sobic004G261600--Sobic008G099800 Sobic003G338500 Sobic003G338500 Sobic010G261600--Sobic003G338500 Sobic002G303600 Sobic002G303600 Sobic010G261600--Sobic002G303600 Sobic002G008800 Sobic002G008800 Sobic010G261600--Sobic002G008800 Sobic010G261600--Sobic004G228800 Sobic010G261600--Sobic004G323700 Sobic002G262900 Sobic002G262900 Sobic010G261600--Sobic002G262900 Sobic009G228700 Sobic009G228700 Sobic010G261600--Sobic009G228700 Sobic004G275700 Sobic004G275700 Sobic010G261600--Sobic004G275700 Sobic010G020400 Sobic010G020400 Sobic010G261600--Sobic010G020400 Sobic002G117400 Sobic002G117400 Sobic004G323700--Sobic002G117400 Sobic007G218000 Sobic007G218000 Sobic004G323700--Sobic007G218000 Sobic004G323700--Sobic002G303600 Sobic004G323700--Sobic010G261600 Sobic004G323700--Sobic004G228800 Sobic004G323700--Sobic010G278200 Sobic006G174850 Sobic006G174850 Sobic004G323700--Sobic006G174850 Sobic004G323700--Sobic006G131000 Sobic004G039600 Sobic004G039600 Sobic004G323700--Sobic004G039600 Sobic010G147100 Sobic010G147100 Sobic010G278200--Sobic010G147100 Sobic009G138100 Sobic009G138100 Sobic010G278200--Sobic009G138100 Sobic010G130000 Sobic010G130000 Sobic010G278200--Sobic010G130000 Sobic001G124200 Sobic001G124200 Sobic010G278200--Sobic001G124200 Sobic006G033200 Sobic006G033200 Sobic010G278200--Sobic006G033200 Sobic005G126600 Sobic005G126600 Sobic010G278200--Sobic005G126600 Sobic003G118200 Sobic003G118200 Sobic010G278200--Sobic003G118200 Sobic003G316500 Sobic003G316500 Sobic010G278200--Sobic003G316500 Sobic008G124900 Sobic008G124900 Sobic010G278200--Sobic008G124900 Sobic003G270600 Sobic003G270600 Sobic004G236200--Sobic003G270600 Sobic001G056800 Sobic001G056800 Sobic004G236200--Sobic001G056800 Sobic006G077300 Sobic006G077300 Sobic004G236200--Sobic006G077300 Sobic004G236200--Sobic004G228800 Sobic006G203300 Sobic006G203300 Sobic004G236200--Sobic006G203300 Sobic003G427600 Sobic003G427600 Sobic004G236200--Sobic003G427600 Sobic003G394200 Sobic003G394200 Sobic004G236200--Sobic003G394200 Sobic007G205900 Sobic007G205900 Sobic004G236200--Sobic007G205900 Sobic002G156000 Sobic002G156000 Sobic004G236200--Sobic002G156000 Sobic006G131000--Sobic007G218000 Sobic007G132100 Sobic007G132100 Sobic006G131000--Sobic007G132100 Sobic006G163800 Sobic006G163800 Sobic006G131000--Sobic006G163800 Sobic006G131000--Sobic004G039600 Sobic001G096000 Sobic001G096000 Sobic006G131000--Sobic001G096000 Sobic006G131000--Sobic006G174850 Sobic010G275500 Sobic010G275500 Sobic006G131000--Sobic010G275500 Sobic001G369000 Sobic001G369000 Sobic006G131000--Sobic001G369000 Sobic004G178200 Sobic004G178200 Sobic006G131000--Sobic004G178200 Sobic003G316200 Sobic003G316200 Sobic005G177700--Sobic003G316200 Sobic007G056100 Sobic007G056100 Sobic005G177700--Sobic007G056100 Sobic002G355800 Sobic002G355800 Sobic005G177700--Sobic002G355800 Sobic005G177700--Sobic006G077300 Sobic009G041700 Sobic009G041700 Sobic005G177700--Sobic009G041700 Sobic001G253300 Sobic001G253300 Sobic005G177700--Sobic001G253300 Sobic005G177700--Sobic004G228800 Sobic003G365100 Sobic003G365100 Sobic005G177700--Sobic003G365100 Sobic002G268800 Sobic002G268800 Sobic005G177700--Sobic002G268800 Sobic007G056600--Sobic004G261600 Sobic007G056600--Sobic004G228800 Sobic007G203300 Sobic007G203300 Sobic007G056600--Sobic007G203300 Sobic010G232600 Sobic010G232600 Sobic007G056600--Sobic010G232600 Sobic007G056600--Sobic006G077300 Sobic004G124500 Sobic004G124500 Sobic007G056600--Sobic004G124500 Sobic007G056600--Sobic003G126300 Sobic003G119700 Sobic003G119700 Sobic007G056600--Sobic003G119700 Sobic007G056600--Sobic001G251200 Sobic003G126300--Sobic004G228800 Sobic009G079300 Sobic009G079300 Sobic003G126300--Sobic009G079300 Sobic004G004200 Sobic004G004200 Sobic003G126300--Sobic004G004200 Sobic008G110600 Sobic008G110600 Sobic003G126300--Sobic008G110600 Sobic003G126300--Sobic004G261600 Sobic006G034000 Sobic006G034000 Sobic003G126300--Sobic006G034000 Sobic003G272400 Sobic003G272400 Sobic003G126300--Sobic003G272400 Sobic003G126300--Sobic007G056600 Sobic003G126300--Sobic006G033200
Octagon: transcription factors


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