Gene annotation
Transcriptome id Sobic.004G039600.1
Synonym Sb04g003410, RPN1A, ATRPN1A
Functional annotation proteasome/cyclosome repeat containing protein, expressed
UniProt C5XUM4
Pfam PF01851
Panther DB PTHR10943
NCBI CDD -
KEGG Orthology K03028; PSMD2, 26S proteasome regulatory subunit N1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G20580 : 26S proteasome regulatory subunit S2 1A
RAP-DB (Rice) LOC_Os02g05340.1 : proteasome/cyclosome repeat containing protein, expressed
MaizeGDB (Corn) Zm00025a034891 , Zm00025a018973
Brachypodium KQK17376 , KQJ93300 , PNT75523
Barley HORVU6Hr1G021020.17 , HORVU6Hr1G021020.16 , HORVU6Hr1G021020.15 , HORVU6Hr1G021020.14 , HORVU6Hr1G021020.13 , HORVU6Hr1G021020.12 , HORVU6Hr1G021020.11 , HORVU6Hr1G021020.19 , HORVU6Hr1G021020.18 , HORVU7Hr1G097500.41 , HORVU7Hr1G097500.40 , HORVU7Hr1G097500.43 , HORVU7Hr1G097500.42 , HORVU6Hr1G021020.10 , HORVU6Hr1G021020.5 , HORVU7Hr1G097500.25 , HORVU7Hr1G097500.24 , HORVU6Hr1G021020.7 , HORVU6Hr1G021020.6 , HORVU7Hr1G097500.29 , HORVU6Hr1G021020.4 , HORVU6Hr1G021020.3 , HORVU6Hr1G021020.2 , HORVU6Hr1G021020.1 , HORVU7Hr1G097500.23 , HORVU7Hr1G097500.22 , HORVU7Hr1G097500.21 , HORVU7Hr1G097500.20 , HORVU7Hr1G097500.27 , HORVU7Hr1G097500.26 , HORVU6Hr1G021020.9 , HORVU6Hr1G021020.8 , HORVU6Hr1G021020.20 , HORVU6Hr1G021020.21 , HORVU7Hr1G097500.38 , HORVU7Hr1G097500.39 , HORVU7Hr1G097500.30 , HORVU7Hr1G097500.31 , HORVU7Hr1G097500.32 , HORVU7Hr1G097500.33 , HORVU7Hr1G097500.34 , HORVU7Hr1G097500.35 , HORVU7Hr1G097500.36 , HORVU7Hr1G097500.37 , HORVU7Hr1G097500.16 , HORVU7Hr1G097500.17 , HORVU7Hr1G097500.14 , HORVU7Hr1G097500.15 , HORVU7Hr1G097500.18 , HORVU7Hr1G097500.19
Wheat TraesCS7D02G413800 , TraesCS7B02G322000 , TraesCS6A02G116500 , TraesCS6A02G116500 , TraesCS6A02G116500 , TraesCS6A02G116500 , TraesCS6B02G144500 , TraesCS6D02G105500 , TraesCS6B02G144500 , TraesCS7D02G413900 , TraesCS7A02G421600 , TraesCS6D02G105500 , TraesCS7A02G421600 , TraesCS7B02G321900 , TraesCS7A02G421700
Populus -


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cDNA sequences
Sobic.004G039600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G012500 protein transport protein Sec24-like, putative, expressed K14007: protein transport protein SEC24
2 Sobic.001G369000 adapitin protein, putative, expressed K12392: AP-1 complex subunit beta-1
3 Sobic.007G132100 myrosinase precursor, putative, expressed -
4 Sobic.008G099800 expressed protein -
5 Sobic.006G126100 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
6 Sobic.010G053800 AP-1 complex subunit gamma-1, putative, expressed K12391: AP-1 complex subunit gamma-1
7 Sobic.006G131000 expressed protein K11968: ariadne-1
8 Sobic.001G534800 Putative ortholog gene associated with awn presence/absence in wheat(PubMedID : 25237112)@adapitin protein, putative, expressed K11824: AP-2 complex subunit alpha
9 Sobic.007G120500 Sec1 family transport protein, putative, expressed K12479: vacuolar protein sorting-associated protein 45
10 Sobic.006G163800 diacylglycerol kinase, putative, expressed -
11 Sobic.006G136400 eukaryotic initiation factor iso-4F subunit p82-34, putative, expressed K03260: translation initiation factor 4G
12 Sobic.003G337300 HEAT repeat family protein, putative, expressed K08876: SCY1-like protein 1
13 Sobic.007G218000 chloride transporter, chloride channel family, putative, expressed -
14 Sobic.006G208500 proteasome/cyclosome repeat containing protein, expressed K03032: PSMD1, 26S proteasome regulatory subunit N2
15 Sobic.002G020700 WD domain, G-beta repeat domain containing protein, expressed K14018: PLAA, DOA1, phospholipase A-2-activating protein
16 Sobic.003G187500 ATP-binding region, ATPase-like domain containing protein, expressed -
17 Sobic.001G124200 ethylene receptor, putative, expressed K14509: ETR, ethylene receptor
18 Sobic.004G072100 centromere/kinetochore protein zw10, putative, expressed K11578: ZW10, protein transport protein DSL1/ZW10
19 Sobic.003G126600 rab GDP dissociation inhibitor alpha, putative, expressed -
20 Sobic.003G187200 phox domain-containing protein, putative, expressed -


Gene co-expression network
sample Sobic004G039600 Sobic004G039600 Sobic006G012500 Sobic006G012500 Sobic004G039600--Sobic006G012500 Sobic001G369000 Sobic001G369000 Sobic004G039600--Sobic001G369000 Sobic007G132100 Sobic007G132100 Sobic004G039600--Sobic007G132100 Sobic008G099800 Sobic008G099800 Sobic004G039600--Sobic008G099800 Sobic006G126100 Sobic006G126100 Sobic004G039600--Sobic006G126100 Sobic010G053800 Sobic010G053800 Sobic004G039600--Sobic010G053800 Sobic006G131000 Sobic006G131000 Sobic004G039600--Sobic006G131000 Sobic001G534800 Sobic001G534800 Sobic004G039600--Sobic001G534800 Sobic007G120500 Sobic007G120500 Sobic004G039600--Sobic007G120500 Sobic006G012500--Sobic004G039600 Sobic006G012500--Sobic010G053800 Sobic006G012500--Sobic008G099800 Sobic010G275500 Sobic010G275500 Sobic006G012500--Sobic010G275500 Sobic004G072100 Sobic004G072100 Sobic006G012500--Sobic004G072100 Sobic006G012500--Sobic001G534800 Sobic001G065000 Sobic001G065000 Sobic006G012500--Sobic001G065000 Sobic006G012500--Sobic007G132100 Sobic007G218000 Sobic007G218000 Sobic006G012500--Sobic007G218000 Sobic001G369000--Sobic004G039600 Sobic001G335900 Sobic001G335900 Sobic001G369000--Sobic001G335900 Sobic001G369000--Sobic007G120500 Sobic003G240700 Sobic003G240700 Sobic001G369000--Sobic003G240700 Sobic006G163800 Sobic006G163800 Sobic001G369000--Sobic006G163800 Sobic006G138000 Sobic006G138000 Sobic001G369000--Sobic006G138000 Sobic009G049400 Sobic009G049400 Sobic001G369000--Sobic009G049400 Sobic001G426600 Sobic001G426600 Sobic001G369000--Sobic001G426600 Sobic009G229600 Sobic009G229600 Sobic001G369000--Sobic009G229600 Sobic007G132100--Sobic007G218000 Sobic007G132100--Sobic004G072100 Sobic007G132100--Sobic004G039600 Sobic004G178200 Sobic004G178200 Sobic007G132100--Sobic004G178200 Sobic007G132100--Sobic006G131000 Sobic007G132100--Sobic006G012500 Sobic009G044800 Sobic009G044800 Sobic007G132100--Sobic009G044800 Sobic007G132100--Sobic008G099800 Sobic010G204400 Sobic010G204400 Sobic007G132100--Sobic010G204400 Sobic008G099800--Sobic006G012500 Sobic008G099800--Sobic001G534800 Sobic004G135400 Sobic004G135400 Sobic008G099800--Sobic004G135400 Sobic001G347500 Sobic001G347500 Sobic008G099800--Sobic001G347500 Sobic001G281100 Sobic001G281100 Sobic008G099800--Sobic001G281100 Sobic004G113400 Sobic004G113400 Sobic008G099800--Sobic004G113400 Sobic008G099800--Sobic004G039600 Sobic003G072200 Sobic003G072200 Sobic008G099800--Sobic003G072200 Sobic008G099800--Sobic001G065000 Sobic004G004300 Sobic004G004300 Sobic006G126100--Sobic004G004300 Sobic008G004600 Sobic008G004600 Sobic006G126100--Sobic008G004600 Sobic006G126100--Sobic004G039600 Sobic006G126100--Sobic001G534800 Sobic003G104000 Sobic003G104000 Sobic006G126100--Sobic003G104000 Sobic006G126100--Sobic006G012500 Sobic006G126100--Sobic004G135400 Sobic006G126100--Sobic007G132100 Sobic006G208500 Sobic006G208500 Sobic006G126100--Sobic006G208500 Sobic010G053800--Sobic006G012500 Sobic010G053800--Sobic010G275500 Sobic010G053800--Sobic004G072100 Sobic001G155000 Sobic001G155000 Sobic010G053800--Sobic001G155000 Sobic003G187500 Sobic003G187500 Sobic010G053800--Sobic003G187500 Sobic008G047800 Sobic008G047800 Sobic010G053800--Sobic008G047800 Sobic010G116600 Sobic010G116600 Sobic010G053800--Sobic010G116600 Sobic010G053800--Sobic006G163800 Sobic010G053800--Sobic004G039600 Sobic006G131000--Sobic007G218000 Sobic006G131000--Sobic007G132100 Sobic006G131000--Sobic006G163800 Sobic006G131000--Sobic004G039600 Sobic001G096000 Sobic001G096000 Sobic006G131000--Sobic001G096000 Sobic006G174850 Sobic006G174850 Sobic006G131000--Sobic006G174850 Sobic006G131000--Sobic010G275500 Sobic006G131000--Sobic001G369000 Sobic006G131000--Sobic004G178200 Sobic001G534800--Sobic001G281100 Sobic001G534800--Sobic008G099800 Sobic001G534800--Sobic004G004300 Sobic001G534800--Sobic004G135400 Sobic005G003300 Sobic005G003300 Sobic001G534800--Sobic005G003300 Sobic005G026200 Sobic005G026200 Sobic001G534800--Sobic005G026200 Sobic001G534800--Sobic006G012500 Sobic001G534800--Sobic004G113400 Sobic001G534800--Sobic001G065000 Sobic007G120500--Sobic001G369000 Sobic007G120500--Sobic004G039600 Sobic007G120500--Sobic007G132100 Sobic007G120500--Sobic006G012500 Sobic003G057700 Sobic003G057700 Sobic007G120500--Sobic003G057700 Sobic003G249600 Sobic003G249600 Sobic007G120500--Sobic003G249600 Sobic007G120500--Sobic004G072100 Sobic007G120500--Sobic010G053800 Sobic003G394200 Sobic003G394200 Sobic007G120500--Sobic003G394200
Octagon: transcription factors


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