Gene annotation
Transcriptome id Sobic.007G120500.1
Synonym VPS45, Sb07g019770, ATVPS45
Functional annotation Sec1 family transport protein, putative, expressed
UniProt C5YKP3
Pfam PF00995
Panther DB PTHR11679 PTHR11679:SF3
NCBI CDD -
KEGG Orthology K12479; vacuolar protein sorting-associated protein 45
Gene Ontology GO:0016192; vesicle-mediated transport GO:0006904vesicle docking involved in exocytosis


Orthologs (automatic annotation)
TAIR AT1G77140 : vacuolar protein sorting 45
RAP-DB (Rice) LOC_Os02g24134.1 : Sec1 family transport protein, putative, expressed
MaizeGDB (Corn) Zm00025a030061
Brachypodium KQJ94563
Barley HORVU2Hr1G062800.9 , HORVU2Hr1G062800.1 , HORVU2Hr1G062800.2 , HORVU2Hr1G062800.3 , HORVU2Hr1G062800.4 , HORVU2Hr1G062800.5 , HORVU2Hr1G062800.6 , HORVU2Hr1G062800.7 , HORVU2Hr1G062800.8
Wheat TraesCS2D02G259600 , TraesCS2B02G277800 , TraesCS2B02G277800 , TraesCS2D02G259600 , TraesCS2A02G264300 , TraesCS2A02G264300 , TraesCS2A02G264300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G369000 adapitin protein, putative, expressed K12392: AP-1 complex subunit beta-1
2 Sobic.004G039600 proteasome/cyclosome repeat containing protein, expressed K03028: PSMD2, 26S proteasome regulatory subunit N1
3 Sobic.007G132100 myrosinase precursor, putative, expressed -
4 Sobic.006G012500 protein transport protein Sec24-like, putative, expressed K14007: protein transport protein SEC24
5 Sobic.003G057700 WD domain, G-beta repeat domain containing protein, expressed -
6 Sobic.003G249600 vacuolar protein sorting-associated protein 16, putative, expressed -
7 Sobic.004G072100 centromere/kinetochore protein zw10, putative, expressed K11578: ZW10, protein transport protein DSL1/ZW10
8 Sobic.010G053800 AP-1 complex subunit gamma-1, putative, expressed K12391: AP-1 complex subunit gamma-1
9 Sobic.003G394200 vacuolar protein sorting-associated protein 53, putative, expressed -
10 Sobic.001G335900 vacuolar protein sorting-associated protein 52, putative, expressed -
11 Sobic.009G049400 "SRS3(Ortholog in rice:Kitagawa et al., 2010)"(PubMedID : 31659920)@ATKINESIN-13A/KINESIN-13A, putative, expressed K10393: KIF2_24, kinesin family member 2/24
12 Sobic.009G229600 tRNA-binding arm, putative, expressed -
13 Sobic.K004100 zinc finger, C3HC4 type domain containing protein, expressed -
14 Sobic.001G426600 SH3 domain containing protein, expressed -
15 Sobic.006G138000 expressed protein -
16 Sobic.007G218000 chloride transporter, chloride channel family, putative, expressed -
17 Sobic.006G163800 diacylglycerol kinase, putative, expressed -
18 Sobic.010G147833 - -
19 Sobic.003G187200 phox domain-containing protein, putative, expressed -
20 Sobic.001G170100 WD domain, G-beta repeat domain containing protein, expressed -


Gene co-expression network
sample Sobic007G120500 Sobic007G120500 Sobic001G369000 Sobic001G369000 Sobic007G120500--Sobic001G369000 Sobic004G039600 Sobic004G039600 Sobic007G120500--Sobic004G039600 Sobic007G132100 Sobic007G132100 Sobic007G120500--Sobic007G132100 Sobic006G012500 Sobic006G012500 Sobic007G120500--Sobic006G012500 Sobic003G057700 Sobic003G057700 Sobic007G120500--Sobic003G057700 Sobic003G249600 Sobic003G249600 Sobic007G120500--Sobic003G249600 Sobic004G072100 Sobic004G072100 Sobic007G120500--Sobic004G072100 Sobic010G053800 Sobic010G053800 Sobic007G120500--Sobic010G053800 Sobic003G394200 Sobic003G394200 Sobic007G120500--Sobic003G394200 Sobic001G369000--Sobic004G039600 Sobic001G335900 Sobic001G335900 Sobic001G369000--Sobic001G335900 Sobic001G369000--Sobic007G120500 Sobic003G240700 Sobic003G240700 Sobic001G369000--Sobic003G240700 Sobic006G163800 Sobic006G163800 Sobic001G369000--Sobic006G163800 Sobic006G138000 Sobic006G138000 Sobic001G369000--Sobic006G138000 Sobic009G049400 Sobic009G049400 Sobic001G369000--Sobic009G049400 Sobic001G426600 Sobic001G426600 Sobic001G369000--Sobic001G426600 Sobic009G229600 Sobic009G229600 Sobic001G369000--Sobic009G229600 Sobic004G039600--Sobic006G012500 Sobic004G039600--Sobic001G369000 Sobic004G039600--Sobic007G132100 Sobic008G099800 Sobic008G099800 Sobic004G039600--Sobic008G099800 Sobic006G126100 Sobic006G126100 Sobic004G039600--Sobic006G126100 Sobic004G039600--Sobic010G053800 Sobic006G131000 Sobic006G131000 Sobic004G039600--Sobic006G131000 Sobic001G534800 Sobic001G534800 Sobic004G039600--Sobic001G534800 Sobic004G039600--Sobic007G120500 Sobic007G218000 Sobic007G218000 Sobic007G132100--Sobic007G218000 Sobic007G132100--Sobic004G072100 Sobic007G132100--Sobic004G039600 Sobic004G178200 Sobic004G178200 Sobic007G132100--Sobic004G178200 Sobic007G132100--Sobic006G131000 Sobic007G132100--Sobic006G012500 Sobic009G044800 Sobic009G044800 Sobic007G132100--Sobic009G044800 Sobic007G132100--Sobic008G099800 Sobic010G204400 Sobic010G204400 Sobic007G132100--Sobic010G204400 Sobic006G012500--Sobic004G039600 Sobic006G012500--Sobic010G053800 Sobic006G012500--Sobic008G099800 Sobic010G275500 Sobic010G275500 Sobic006G012500--Sobic010G275500 Sobic006G012500--Sobic004G072100 Sobic006G012500--Sobic001G534800 Sobic001G065000 Sobic001G065000 Sobic006G012500--Sobic001G065000 Sobic006G012500--Sobic007G132100 Sobic006G012500--Sobic007G218000 Sobic003G057700--Sobic007G120500 Sobic010G147833 Sobic010G147833 Sobic003G057700--Sobic010G147833 Sobic003G057700--Sobic003G249600 Sobic001G145400 Sobic001G145400 Sobic003G057700--Sobic001G145400 Sobic006G077200 Sobic006G077200 Sobic003G057700--Sobic006G077200 Sobic003G057700--Sobic007G132100 Sobic001G276200 Sobic001G276200 Sobic003G057700--Sobic001G276200 Sobic001G515100 Sobic001G515100 Sobic003G057700--Sobic001G515100 Sobic001G493200 Sobic001G493200 Sobic003G057700--Sobic001G493200 Sobic003G249600--Sobic006G077200 Sobic004G096400 Sobic004G096400 Sobic003G249600--Sobic004G096400 Sobic003G249600--Sobic007G120500 Sobic003G249600--Sobic007G132100 Sobic003G126600 Sobic003G126600 Sobic003G249600--Sobic003G126600 Sobic003G249600--Sobic004G072100 Sobic004G322400 Sobic004G322400 Sobic003G249600--Sobic004G322400 Sobic008G124800 Sobic008G124800 Sobic003G249600--Sobic008G124800 Sobic003G249600--Sobic004G039600 Sobic004G072100--Sobic007G218000 Sobic004G072100--Sobic010G053800 Sobic004G072100--Sobic010G275500 Sobic004G072100--Sobic007G132100 Sobic004G072100--Sobic006G012500 Sobic010G069100 Sobic010G069100 Sobic004G072100--Sobic010G069100 Sobic010G116600 Sobic010G116600 Sobic004G072100--Sobic010G116600 Sobic008G047800 Sobic008G047800 Sobic004G072100--Sobic008G047800 Sobic001G155000 Sobic001G155000 Sobic004G072100--Sobic001G155000 Sobic010G053800--Sobic006G012500 Sobic010G053800--Sobic010G275500 Sobic010G053800--Sobic004G072100 Sobic010G053800--Sobic001G155000 Sobic003G187500 Sobic003G187500 Sobic010G053800--Sobic003G187500 Sobic010G053800--Sobic008G047800 Sobic010G053800--Sobic010G116600 Sobic010G053800--Sobic006G163800 Sobic010G053800--Sobic004G039600 Sobic004G084500 Sobic004G084500 Sobic003G394200--Sobic004G084500 Sobic006G203300 Sobic006G203300 Sobic003G394200--Sobic006G203300 Sobic006G128100 Sobic006G128100 Sobic003G394200--Sobic006G128100 Sobic010G223400 Sobic010G223400 Sobic003G394200--Sobic010G223400 Sobic001G308400 Sobic001G308400 Sobic003G394200--Sobic001G308400 Sobic003G394200--Sobic009G049400 Sobic003G270600 Sobic003G270600 Sobic003G394200--Sobic003G270600 Sobic003G189600 Sobic003G189600 Sobic003G394200--Sobic003G189600 Sobic003G394200--Sobic001G369000
Octagon: transcription factors


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