Gene annotation
Transcriptome id Sobic.006G012500.1
Synonym SEC24A, ERMO2, Sb06g001240
Functional annotation protein transport protein Sec24-like, putative, expressed
UniProt C5YBU0
Pfam PF04810 PF08033 PF04815 PF04811
Panther DB PTHR13803 PTHR13803:SF11
NCBI CDD -
KEGG Orthology K14007; protein transport protein SEC24
Gene Ontology GO:0008270; zinc ion binding GO:0006888endoplasmic reticulum to Golgi vesicle-mediated transport GO:0006886intracellular protein transport


Orthologs (automatic annotation)
TAIR AT3G07100 : Sec23/Sec24 protein transport family protein
RAP-DB (Rice) LOC_Os04g04020.1 : protein transport protein Sec24-like, putative, expressed
MaizeGDB (Corn) Zm00025a012263 , Zm00025a055594
Brachypodium KQJ81529 , PNT60537
Barley HORVU2Hr1G001900.2 , HORVU2Hr1G001900.3 , HORVU2Hr1G001900.1 , HORVU2Hr1G001900.4 , HORVU2Hr1G001900.5
Wheat TraesCS2B02G008900 , TraesCS2B02G008900 , TraesCS2A02G012200 , TraesCS2A02G012200 , TraesCS2A02G012200 , TraesCS2A02G012200 , TraesCS2D02G012900 , TraesCS2D02G012900 , TraesCS2A02G012200 , TraesCS2D02G012900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G039600 proteasome/cyclosome repeat containing protein, expressed K03028: PSMD2, 26S proteasome regulatory subunit N1
2 Sobic.010G053800 AP-1 complex subunit gamma-1, putative, expressed K12391: AP-1 complex subunit gamma-1
3 Sobic.008G099800 expressed protein -
4 Sobic.010G275500 EF hand family protein, putative, expressed -
5 Sobic.004G072100 centromere/kinetochore protein zw10, putative, expressed K11578: ZW10, protein transport protein DSL1/ZW10
6 Sobic.001G534800 Putative ortholog gene associated with awn presence/absence in wheat(PubMedID : 25237112)@adapitin protein, putative, expressed K11824: AP-2 complex subunit alpha
7 Sobic.001G065000 expressed protein -
8 Sobic.007G132100 myrosinase precursor, putative, expressed -
9 Sobic.007G218000 chloride transporter, chloride channel family, putative, expressed -
10 Sobic.001G347500 expressed protein -
11 Sobic.010G116600 FHA domain containing protein, putative, expressed -
12 Sobic.001G369000 adapitin protein, putative, expressed K12392: AP-1 complex subunit beta-1
13 Sobic.006G163800 diacylglycerol kinase, putative, expressed -
14 Sobic.006G126100 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
15 Sobic.001G114000 expressed protein -
16 Sobic.001G281100 START domain containing protein, expressed -
17 Sobic.004G146500 ataxin-2 related protein, putative, expressed -
18 Sobic.007G120500 Sec1 family transport protein, putative, expressed K12479: vacuolar protein sorting-associated protein 45
19 Sobic.003G408600 GYF domain containing protein, putative, expressed K18730: PERQ amino acid-rich with GYF domain-containing protein
20 Sobic.009G044800 cullin, putative, expressed K03347: CUL1, cullin 1


Gene co-expression network
sample Sobic006G012500 Sobic006G012500 Sobic004G039600 Sobic004G039600 Sobic006G012500--Sobic004G039600 Sobic010G053800 Sobic010G053800 Sobic006G012500--Sobic010G053800 Sobic008G099800 Sobic008G099800 Sobic006G012500--Sobic008G099800 Sobic010G275500 Sobic010G275500 Sobic006G012500--Sobic010G275500 Sobic004G072100 Sobic004G072100 Sobic006G012500--Sobic004G072100 Sobic001G534800 Sobic001G534800 Sobic006G012500--Sobic001G534800 Sobic001G065000 Sobic001G065000 Sobic006G012500--Sobic001G065000 Sobic007G132100 Sobic007G132100 Sobic006G012500--Sobic007G132100 Sobic007G218000 Sobic007G218000 Sobic006G012500--Sobic007G218000 Sobic004G039600--Sobic006G012500 Sobic001G369000 Sobic001G369000 Sobic004G039600--Sobic001G369000 Sobic004G039600--Sobic007G132100 Sobic004G039600--Sobic008G099800 Sobic006G126100 Sobic006G126100 Sobic004G039600--Sobic006G126100 Sobic004G039600--Sobic010G053800 Sobic006G131000 Sobic006G131000 Sobic004G039600--Sobic006G131000 Sobic004G039600--Sobic001G534800 Sobic007G120500 Sobic007G120500 Sobic004G039600--Sobic007G120500 Sobic010G053800--Sobic006G012500 Sobic010G053800--Sobic010G275500 Sobic010G053800--Sobic004G072100 Sobic001G155000 Sobic001G155000 Sobic010G053800--Sobic001G155000 Sobic003G187500 Sobic003G187500 Sobic010G053800--Sobic003G187500 Sobic008G047800 Sobic008G047800 Sobic010G053800--Sobic008G047800 Sobic010G116600 Sobic010G116600 Sobic010G053800--Sobic010G116600 Sobic006G163800 Sobic006G163800 Sobic010G053800--Sobic006G163800 Sobic010G053800--Sobic004G039600 Sobic008G099800--Sobic006G012500 Sobic008G099800--Sobic001G534800 Sobic004G135400 Sobic004G135400 Sobic008G099800--Sobic004G135400 Sobic001G347500 Sobic001G347500 Sobic008G099800--Sobic001G347500 Sobic001G281100 Sobic001G281100 Sobic008G099800--Sobic001G281100 Sobic004G113400 Sobic004G113400 Sobic008G099800--Sobic004G113400 Sobic008G099800--Sobic004G039600 Sobic003G072200 Sobic003G072200 Sobic008G099800--Sobic003G072200 Sobic008G099800--Sobic001G065000 Sobic010G275500--Sobic010G053800 Sobic010G275500--Sobic004G072100 Sobic010G275500--Sobic006G012500 Sobic010G275500--Sobic001G155000 Sobic010G275500--Sobic010G116600 Sobic010G069100 Sobic010G069100 Sobic010G275500--Sobic010G069100 Sobic009G119000 Sobic009G119000 Sobic010G275500--Sobic009G119000 Sobic007G183900 Sobic007G183900 Sobic010G275500--Sobic007G183900 Sobic002G397500 Sobic002G397500 Sobic010G275500--Sobic002G397500 Sobic004G072100--Sobic007G218000 Sobic004G072100--Sobic010G053800 Sobic004G072100--Sobic010G275500 Sobic004G072100--Sobic007G132100 Sobic004G072100--Sobic006G012500 Sobic004G072100--Sobic010G069100 Sobic004G072100--Sobic010G116600 Sobic004G072100--Sobic008G047800 Sobic004G072100--Sobic001G155000 Sobic001G534800--Sobic001G281100 Sobic001G534800--Sobic008G099800 Sobic004G004300 Sobic004G004300 Sobic001G534800--Sobic004G004300 Sobic001G534800--Sobic004G135400 Sobic005G003300 Sobic005G003300 Sobic001G534800--Sobic005G003300 Sobic005G026200 Sobic005G026200 Sobic001G534800--Sobic005G026200 Sobic001G534800--Sobic006G012500 Sobic001G534800--Sobic004G113400 Sobic001G534800--Sobic001G065000 Sobic001G114000 Sobic001G114000 Sobic001G065000--Sobic001G114000 Sobic001G065000--Sobic001G281100 Sobic001G065000--Sobic006G012500 Sobic001G065000--Sobic001G534800 Sobic005G118600 Sobic005G118600 Sobic001G065000--Sobic005G118600 Sobic001G065000--Sobic008G099800 Sobic003G093800 Sobic003G093800 Sobic001G065000--Sobic003G093800 Sobic006G037700 Sobic006G037700 Sobic001G065000--Sobic006G037700 Sobic003G229500 Sobic003G229500 Sobic001G065000--Sobic003G229500 Sobic007G132100--Sobic007G218000 Sobic007G132100--Sobic004G072100 Sobic007G132100--Sobic004G039600 Sobic004G178200 Sobic004G178200 Sobic007G132100--Sobic004G178200 Sobic007G132100--Sobic006G131000 Sobic007G132100--Sobic006G012500 Sobic009G044800 Sobic009G044800 Sobic007G132100--Sobic009G044800 Sobic007G132100--Sobic008G099800 Sobic010G204400 Sobic010G204400 Sobic007G132100--Sobic010G204400 Sobic007G218000--Sobic007G132100 Sobic007G218000--Sobic004G072100 Sobic002G112700 Sobic002G112700 Sobic007G218000--Sobic002G112700 Sobic007G218000--Sobic006G131000 Sobic007G218000--Sobic009G044800 Sobic007G218000--Sobic010G204400 Sobic007G218000--Sobic006G012500 Sobic009G249700 Sobic009G249700 Sobic007G218000--Sobic009G249700 Sobic009G092400 Sobic009G092400 Sobic007G218000--Sobic009G092400
Octagon: transcription factors


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