Gene annotation
Transcriptome id Sobic.006G208500.1
Synonym Sb06g027940
Functional annotation proteasome/cyclosome repeat containing protein, expressed
UniProt A0A1B6PN20
Pfam PF13646 PF01851
Panther DB PTHR10943 PTHR10943:SF3
NCBI CDD -
KEGG Orthology K03032; PSMD1, 26S proteasome regulatory subunit N2
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G32730 : 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit
RAP-DB (Rice) LOC_Os08g12820.1 : proteasome/cyclosome repeat containing protein, expressed
MaizeGDB (Corn) Zm00025a009855 , Zm00025a054912 , Zm00025a056982
Brachypodium KQJ84467 , KQJ95640
Barley HORVU1Hr1G081810.10 , HORVU1Hr1G081810.9 , HORVU1Hr1G081810.8 , HORVU1Hr1G081810.7 , HORVU1Hr1G081810.6 , HORVU1Hr1G081810.5 , HORVU1Hr1G081810.3 , HORVU1Hr1G081810.2 , HORVU1Hr1G081810.4 , HORVU1Hr1G081810.1
Wheat TraesCS2B02G450800 , TraesCS2B02G450800 , TraesCS2B02G450800 , TraesCS1A02G348400 , TraesCS1B02G363000 , TraesCS2A02G430100 , TraesCS2A02G430100 , TraesCS2A02G430100 , TraesCS2A02G430100 , TraesCS2A02G430100 , TraesCS2D02G427700 , TraesCS2D02G427700 , TraesCS2D02G427700 , TraesCS2D02G427700 , TraesCS1D02G351400 , TraesCS1D02G351400
Populus -


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cDNA sequences
Sobic.006G208500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G135400 expressed protein -
2 Sobic.003G006400 metallo-beta-lactamase family protein, putative, expressed K00784: ribonuclease Z
3 Sobic.006G136400 eukaryotic initiation factor iso-4F subunit p82-34, putative, expressed K03260: translation initiation factor 4G
4 Sobic.009G245800 protein of unknown function DUF1296 domain containing protein, expressed -
5 Sobic.006G126100 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
6 Sobic.004G039600 proteasome/cyclosome repeat containing protein, expressed K03028: PSMD2, 26S proteasome regulatory subunit N1
7 Sobic.006G200700 elongation factor Tu, putative, expressed K14416: elongation factor 1 alpha-like protein
8 Sobic.001G369000 adapitin protein, putative, expressed K12392: AP-1 complex subunit beta-1
9 Sobic.004G277200 GPI transamidase subunit PIG-U domain containing protein, expressed K05293: GPI-anchor transamidase subunit U
10 Sobic.001G534800 Putative ortholog gene associated with awn presence/absence in wheat(PubMedID : 25237112)@adapitin protein, putative, expressed K11824: AP-2 complex subunit alpha
11 Sobic.008G004600 ubiquitin-activating enzyme, putative, expressed K03178: UBE1, ubiquitin-activating enzyme E1
12 Sobic.004G178200 ligatin, putative, expressed K15027: translation initiation factor 2D
13 Sobic.001G017700 diphthamide biosynthesis protein, putative, expressed K17866: diphthamide biosynthesis protein 2
14 Sobic.008G099800 expressed protein -
15 Sobic.010G275500 EF hand family protein, putative, expressed -
16 Sobic.006G012500 protein transport protein Sec24-like, putative, expressed K14007: protein transport protein SEC24
17 Sobic.002G275600 RFC1 - Putative clamp loader of PCNA, replication factor C subunit 1, expressed K10754: replication factor C subunit 1
18 Sobic.004G353000 ABC transporter, ATP-binding protein, putative, expressed K06158: ATP-binding cassette, subfamily F, member 3
19 Sobic.005G216300 RNA recognition motif containing protein, expressed K12837: splicing factor U2AF 65 kDa subunit
20 Sobic.010G053800 AP-1 complex subunit gamma-1, putative, expressed K12391: AP-1 complex subunit gamma-1


Gene co-expression network
sample Sobic006G208500 Sobic006G208500 Sobic004G135400 Sobic004G135400 Sobic006G208500--Sobic004G135400 Sobic003G006400 Sobic003G006400 Sobic006G208500--Sobic003G006400 Sobic006G136400 Sobic006G136400 Sobic006G208500--Sobic006G136400 Sobic009G245800 Sobic009G245800 Sobic006G208500--Sobic009G245800 Sobic006G126100 Sobic006G126100 Sobic006G208500--Sobic006G126100 Sobic004G039600 Sobic004G039600 Sobic006G208500--Sobic004G039600 Sobic006G200700 Sobic006G200700 Sobic006G208500--Sobic006G200700 Sobic001G369000 Sobic001G369000 Sobic006G208500--Sobic001G369000 Sobic004G277200 Sobic004G277200 Sobic006G208500--Sobic004G277200 Sobic001G534800 Sobic001G534800 Sobic004G135400--Sobic001G534800 Sobic004G135400--Sobic006G208500 Sobic008G099800 Sobic008G099800 Sobic004G135400--Sobic008G099800 Sobic004G135400--Sobic004G277200 Sobic005G003300 Sobic005G003300 Sobic004G135400--Sobic005G003300 Sobic008G004600 Sobic008G004600 Sobic004G135400--Sobic008G004600 Sobic004G135400--Sobic006G126100 Sobic002G042600 Sobic002G042600 Sobic004G135400--Sobic002G042600 Sobic004G135400--Sobic009G245800 Sobic003G006400--Sobic006G208500 Sobic003G006400--Sobic006G200700 Sobic002G275600 Sobic002G275600 Sobic003G006400--Sobic002G275600 Sobic003G006400--Sobic001G369000 Sobic006G138000 Sobic006G138000 Sobic003G006400--Sobic006G138000 Sobic010G151900 Sobic010G151900 Sobic003G006400--Sobic010G151900 Sobic001G145400 Sobic001G145400 Sobic003G006400--Sobic001G145400 Sobic006G077200 Sobic006G077200 Sobic003G006400--Sobic006G077200 Sobic010G007100 Sobic010G007100 Sobic003G006400--Sobic010G007100 Sobic006G136400--Sobic008G004600 Sobic004G178200 Sobic004G178200 Sobic006G136400--Sobic004G178200 Sobic006G136400--Sobic006G208500 Sobic004G131300 Sobic004G131300 Sobic006G136400--Sobic004G131300 Sobic006G136400--Sobic004G039600 Sobic006G136400--Sobic006G126100 Sobic002G262900 Sobic002G262900 Sobic006G136400--Sobic002G262900 Sobic001G447300 Sobic001G447300 Sobic006G136400--Sobic001G447300 Sobic002G142900 Sobic002G142900 Sobic006G136400--Sobic002G142900 Sobic010G053800 Sobic010G053800 Sobic009G245800--Sobic010G053800 Sobic003G404500 Sobic003G404500 Sobic009G245800--Sobic003G404500 Sobic004G072100 Sobic004G072100 Sobic009G245800--Sobic004G072100 Sobic008G047800 Sobic008G047800 Sobic009G245800--Sobic008G047800 Sobic009G245800--Sobic006G208500 Sobic006G195700 Sobic006G195700 Sobic009G245800--Sobic006G195700 Sobic002G310200 Sobic002G310200 Sobic009G245800--Sobic002G310200 Sobic009G245800--Sobic004G135400 Sobic003G443100 Sobic003G443100 Sobic009G245800--Sobic003G443100 Sobic004G004300 Sobic004G004300 Sobic006G126100--Sobic004G004300 Sobic006G126100--Sobic008G004600 Sobic006G126100--Sobic004G039600 Sobic006G126100--Sobic001G534800 Sobic003G104000 Sobic003G104000 Sobic006G126100--Sobic003G104000 Sobic006G012500 Sobic006G012500 Sobic006G126100--Sobic006G012500 Sobic006G126100--Sobic004G135400 Sobic007G132100 Sobic007G132100 Sobic006G126100--Sobic007G132100 Sobic006G126100--Sobic006G208500 Sobic004G039600--Sobic006G012500 Sobic004G039600--Sobic001G369000 Sobic004G039600--Sobic007G132100 Sobic004G039600--Sobic008G099800 Sobic004G039600--Sobic006G126100 Sobic004G039600--Sobic010G053800 Sobic006G131000 Sobic006G131000 Sobic004G039600--Sobic006G131000 Sobic004G039600--Sobic001G534800 Sobic007G120500 Sobic007G120500 Sobic004G039600--Sobic007G120500 Sobic004G353000 Sobic004G353000 Sobic006G200700--Sobic004G353000 Sobic006G200700--Sobic006G208500 Sobic008G014500 Sobic008G014500 Sobic006G200700--Sobic008G014500 Sobic010G116600 Sobic010G116600 Sobic006G200700--Sobic010G116600 Sobic006G204800 Sobic006G204800 Sobic006G200700--Sobic006G204800 Sobic001G522600 Sobic001G522600 Sobic006G200700--Sobic001G522600 Sobic006G200700--Sobic003G006400 Sobic006G200700--Sobic004G277200 Sobic009G044800 Sobic009G044800 Sobic006G200700--Sobic009G044800 Sobic001G369000--Sobic004G039600 Sobic001G335900 Sobic001G335900 Sobic001G369000--Sobic001G335900 Sobic001G369000--Sobic007G120500 Sobic003G240700 Sobic003G240700 Sobic001G369000--Sobic003G240700 Sobic006G163800 Sobic006G163800 Sobic001G369000--Sobic006G163800 Sobic001G369000--Sobic006G138000 Sobic009G049400 Sobic009G049400 Sobic001G369000--Sobic009G049400 Sobic001G426600 Sobic001G426600 Sobic001G369000--Sobic001G426600 Sobic009G229600 Sobic009G229600 Sobic001G369000--Sobic009G229600 Sobic004G277200--Sobic004G135400 Sobic004G277200--Sobic008G099800 Sobic010G118950 Sobic010G118950 Sobic004G277200--Sobic010G118950 Sobic007G225100 Sobic007G225100 Sobic004G277200--Sobic007G225100 Sobic004G277200--Sobic003G104000 Sobic004G277200--Sobic006G208500 Sobic003G332500 Sobic003G332500 Sobic004G277200--Sobic003G332500 Sobic004G277200--Sobic006G200700 Sobic009G201700 Sobic009G201700 Sobic004G277200--Sobic009G201700
Octagon: transcription factors


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