Gene annotation
Transcriptome id Sobic.008G004600.2,Sobic.008G004600.1
Synonym UBA2, Sb08g000540, ATUBA2
Functional annotation ubiquitin-activating enzyme, putative, expressed
UniProt C5YQ24
Pfam PF16191 PF09358 PF16190 PF10585 PF00899
Panther DB PTHR10953 PTHR10953:SF151
NCBI CDD -
KEGG Orthology K03178; UBE1, ubiquitin-activating enzyme E1
Gene Ontology GO:0008641; ubiquitin-like modifier activating enzyme activity


Orthologs (automatic annotation)
TAIR AT5G06460 : ubiquitin activating enzyme 2
RAP-DB (Rice) LOC_Os11g01510.3,LOC_Os11g01510.1 : ubiquitin-activating enzyme, putative, expressed
MaizeGDB (Corn) Zm00025a013214 , Zm00025a033273 , Zm00025a053662
Brachypodium KQJ92629 , KQJ89617
Barley HORVU5Hr1G047790.2 , HORVU5Hr1G047790.3 , HORVU5Hr1G047790.1 , HORVU5Hr1G047790.6 , HORVU5Hr1G047790.7 , HORVU5Hr1G047790.4 , HORVU5Hr1G047790.5 , HORVU4Hr1G024590.8 , HORVU4Hr1G024590.9 , HORVU4Hr1G024590.6 , HORVU4Hr1G024590.7 , HORVU4Hr1G024590.4 , HORVU4Hr1G024590.5 , HORVU4Hr1G024590.2 , HORVU4Hr1G024590.3 , HORVU4Hr1G024590.1
Wheat TraesCS5A02G152600 , TraesCS5A02G152600 , TraesCS5D02G157800 , TraesCS4A02G180800 , TraesCS5B02G151300 , TraesCS4B02G137100 , TraesCS4D02G131600
Populus -


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cDNA sequences
Sobic.008G004600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G126100 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
2 Sobic.006G136400 eukaryotic initiation factor iso-4F subunit p82-34, putative, expressed K03260: translation initiation factor 4G
3 Sobic.004G135400 expressed protein -
4 Sobic.005G003300 clathrin heavy chain, putative, expressed K04646: clathrin heavy chain
5 Sobic.010G205800 palmitoyltransferase TIP1, putative, expressed K18932: palmitoyltransferase
6 Sobic.006G208500 proteasome/cyclosome repeat containing protein, expressed K03032: PSMD1, 26S proteasome regulatory subunit N2
7 Sobic.004G039600 proteasome/cyclosome repeat containing protein, expressed K03028: PSMD2, 26S proteasome regulatory subunit N1
8 Sobic.001G007000 -(PubMedID : 26976818)@4-nitrophenylphosphatase, putative, expressed K19269: PGP, phosphoglycolate phosphatase
9 Sobic.002G359400 transporter-related, putative, expressed K15285: solute carrier family 35, member E3
10 Sobic.009G075800 serine/threonine protein phosphatase 5, putative, expressed K04460: serine/threonine-protein phosphatase 5
11 Sobic.004G257100 transmembrane 9 superfamily member, putative, expressed -
12 Sobic.009G245800 protein of unknown function DUF1296 domain containing protein, expressed -
13 Sobic.001G534800 Putative ortholog gene associated with awn presence/absence in wheat(PubMedID : 25237112)@adapitin protein, putative, expressed K11824: AP-2 complex subunit alpha
14 Sobic.004G131300 expressed protein K12617: PATL1, DNA topoisomerase 2-associated protein PAT1
15 Sobic.008G089100 armadillo/beta-catenin repeat family protein, putative, expressed -
16 Sobic.003G169600 mitochondrial carrier protein, putative, expressed K15115: SLC25A32, solute carrier family 25 (mitochondrial folate transporter), member 32
17 Sobic.009G056200 arginyl-tRNA synthetase, putative, expressed K01887: RARS, arginyl-tRNA synthetase
18 Sobic.009G199200 gamma-glutamyl hydrolase precursor, putative, expressed K01307: gamma-glutamyl hydrolase
19 Sobic.001G000200 TBC domain containing protein, expressed -
20 Sobic.007G054800 valyl-tRNA synthetase, putative, expressed K01873: VARS, valyl-tRNA synthetase


Gene co-expression network
sample Sobic008G004600 Sobic008G004600 Sobic006G126100 Sobic006G126100 Sobic008G004600--Sobic006G126100 Sobic006G136400 Sobic006G136400 Sobic008G004600--Sobic006G136400 Sobic004G135400 Sobic004G135400 Sobic008G004600--Sobic004G135400 Sobic005G003300 Sobic005G003300 Sobic008G004600--Sobic005G003300 Sobic010G205800 Sobic010G205800 Sobic008G004600--Sobic010G205800 Sobic006G208500 Sobic006G208500 Sobic008G004600--Sobic006G208500 Sobic004G039600 Sobic004G039600 Sobic008G004600--Sobic004G039600 Sobic001G007000 Sobic001G007000 Sobic008G004600--Sobic001G007000 Sobic002G359400 Sobic002G359400 Sobic008G004600--Sobic002G359400 Sobic004G004300 Sobic004G004300 Sobic006G126100--Sobic004G004300 Sobic006G126100--Sobic008G004600 Sobic006G126100--Sobic004G039600 Sobic001G534800 Sobic001G534800 Sobic006G126100--Sobic001G534800 Sobic003G104000 Sobic003G104000 Sobic006G126100--Sobic003G104000 Sobic006G012500 Sobic006G012500 Sobic006G126100--Sobic006G012500 Sobic006G126100--Sobic004G135400 Sobic007G132100 Sobic007G132100 Sobic006G126100--Sobic007G132100 Sobic006G126100--Sobic006G208500 Sobic006G136400--Sobic008G004600 Sobic004G178200 Sobic004G178200 Sobic006G136400--Sobic004G178200 Sobic006G136400--Sobic006G208500 Sobic004G131300 Sobic004G131300 Sobic006G136400--Sobic004G131300 Sobic006G136400--Sobic004G039600 Sobic006G136400--Sobic006G126100 Sobic002G262900 Sobic002G262900 Sobic006G136400--Sobic002G262900 Sobic001G447300 Sobic001G447300 Sobic006G136400--Sobic001G447300 Sobic002G142900 Sobic002G142900 Sobic006G136400--Sobic002G142900 Sobic004G135400--Sobic001G534800 Sobic004G135400--Sobic006G208500 Sobic008G099800 Sobic008G099800 Sobic004G135400--Sobic008G099800 Sobic004G277200 Sobic004G277200 Sobic004G135400--Sobic004G277200 Sobic004G135400--Sobic005G003300 Sobic004G135400--Sobic008G004600 Sobic004G135400--Sobic006G126100 Sobic002G042600 Sobic002G042600 Sobic004G135400--Sobic002G042600 Sobic009G245800 Sobic009G245800 Sobic004G135400--Sobic009G245800 Sobic005G003300--Sobic001G534800 Sobic005G026200 Sobic005G026200 Sobic005G003300--Sobic005G026200 Sobic005G003300--Sobic004G135400 Sobic005G003300--Sobic004G004300 Sobic005G003300--Sobic008G004600 Sobic005G003300--Sobic006G126100 Sobic008G003700 Sobic008G003700 Sobic005G003300--Sobic008G003700 Sobic005G003300--Sobic008G099800 Sobic005G003300--Sobic004G039600 Sobic001G121200 Sobic001G121200 Sobic010G205800--Sobic001G121200 Sobic001G390800 Sobic001G390800 Sobic010G205800--Sobic001G390800 Sobic001G124200 Sobic001G124200 Sobic010G205800--Sobic001G124200 Sobic010G205800--Sobic001G007000 Sobic001G000200 Sobic001G000200 Sobic010G205800--Sobic001G000200 Sobic010G205800--Sobic002G262900 Sobic004G274200 Sobic004G274200 Sobic010G205800--Sobic004G274200 Sobic006G199200 Sobic006G199200 Sobic010G205800--Sobic006G199200 Sobic001G079200 Sobic001G079200 Sobic010G205800--Sobic001G079200 Sobic006G208500--Sobic004G135400 Sobic003G006400 Sobic003G006400 Sobic006G208500--Sobic003G006400 Sobic006G208500--Sobic006G136400 Sobic006G208500--Sobic009G245800 Sobic006G208500--Sobic006G126100 Sobic006G208500--Sobic004G039600 Sobic006G200700 Sobic006G200700 Sobic006G208500--Sobic006G200700 Sobic001G369000 Sobic001G369000 Sobic006G208500--Sobic001G369000 Sobic006G208500--Sobic004G277200 Sobic004G039600--Sobic006G012500 Sobic004G039600--Sobic001G369000 Sobic004G039600--Sobic007G132100 Sobic004G039600--Sobic008G099800 Sobic004G039600--Sobic006G126100 Sobic010G053800 Sobic010G053800 Sobic004G039600--Sobic010G053800 Sobic006G131000 Sobic006G131000 Sobic004G039600--Sobic006G131000 Sobic004G039600--Sobic001G534800 Sobic007G120500 Sobic007G120500 Sobic004G039600--Sobic007G120500 Sobic009G068500 Sobic009G068500 Sobic001G007000--Sobic009G068500 Sobic010G251000 Sobic010G251000 Sobic001G007000--Sobic010G251000 Sobic001G392300 Sobic001G392300 Sobic001G007000--Sobic001G392300 Sobic001G007000--Sobic002G359400 Sobic004G353200 Sobic004G353200 Sobic001G007000--Sobic004G353200 Sobic001G007000--Sobic010G205800 Sobic008G046500 Sobic008G046500 Sobic001G007000--Sobic008G046500 Sobic001G080700 Sobic001G080700 Sobic001G007000--Sobic001G080700 Sobic001G031100 Sobic001G031100 Sobic001G007000--Sobic001G031100 Sobic002G359400--Sobic001G007000 Sobic002G359400--Sobic001G392300 Sobic010G262000 Sobic010G262000 Sobic002G359400--Sobic010G262000 Sobic006G041600 Sobic006G041600 Sobic002G359400--Sobic006G041600 Sobic002G359400--Sobic008G004600 Sobic002G305000 Sobic002G305000 Sobic002G359400--Sobic002G305000 Sobic002G325300 Sobic002G325300 Sobic002G359400--Sobic002G325300 Sobic006G103200 Sobic006G103200 Sobic002G359400--Sobic006G103200 Sobic003G102400 Sobic003G102400 Sobic002G359400--Sobic003G102400
Octagon: transcription factors


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