Gene annotation
Transcriptome id Sobic.009G056200.2,Sobic.009G056200.1
Synonym Sb09g004730, emb1027
Functional annotation arginyl-tRNA synthetase, putative, expressed
UniProt A0A1B6P6V7 , A0A1B6P731
Pfam PF03485 PF05746 PF00750
Panther DB PTHR11956 PTHR11956:SF5
NCBI CDD -
KEGG Orthology K01887; RARS, arginyl-tRNA synthetase
Gene Ontology GO:0006420; arginyl-tRNA aminoacylation GO:0005737cytoplasm GO:0005524ATP binding GO:0004814arginine-tRNA ligase activity GO:0000166nucleotide binding


Orthologs (automatic annotation)
TAIR AT4G26300 : Arginyl-tRNA synthetase, class Ic
RAP-DB (Rice) LOC_Os05g07030.1 : arginyl-tRNA synthetase, putative, expressed
MaizeGDB (Corn) Zm00025a042930 , Zm00025a038036
Brachypodium KQK07343
Barley HORVU1Hr1G024170.20 , HORVU1Hr1G024170.11 , HORVU1Hr1G024170.10 , HORVU1Hr1G024170.13 , HORVU1Hr1G024170.12 , HORVU1Hr1G024170.15 , HORVU1Hr1G024170.19 , HORVU1Hr1G024170.18 , HORVU1Hr1G024170.14 , HORVU1Hr1G024170.17 , HORVU1Hr1G024170.16 , HORVU1Hr1G024170.5 , HORVU1Hr1G024170.4 , HORVU1Hr1G024170.7 , HORVU1Hr1G024170.6 , HORVU1Hr1G024170.1 , HORVU1Hr1G024170.3 , HORVU1Hr1G024170.2 , HORVU1Hr1G024170.9 , HORVU1Hr1G024170.8
Wheat TraesCS1A02G107800 , TraesCS1A02G107800 , TraesCS1A02G107800 , TraesCS1A02G107800 , TraesCS3A02G310400 , TraesCS3A02G310400 , TraesCS1B02G129900 , TraesCS1B02G129900 , TraesCS1B02G129900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G172500 WD repeat-containing protein, putative, expressed K08266: MLST8, target of rapamycin complex subunit LST8
2 Sobic.001G194200 diacylglycerol kinase, putative, expressed -
3 Sobic.001G227400 WD domain, G-beta repeat domain containing protein, expressed -
4 Sobic.006G055200 RNA-binding motif protein, putative, expressed K13192: RNA-binding protein 26
5 Sobic.003G195000 OsFtsH5 FtsH protease, homologue of AtFtsH4, expressed K08955: ATP-dependent metalloprotease
6 Sobic.007G207200 phenylalanyl-tRNA synthetase beta chain, putative, expressed K01890: FARSB, phenylalanyl-tRNA synthetase beta chain
7 Sobic.008G063300 exonuclease, putative, expressed K14570: REX1, REXO1, RNA exonuclease 1
8 Sobic.002G142900 immunoglobulin/major histocompatibility complex, putative, expressed K12607: CCR4-NOT transcription complex subunit 10
9 Sobic.006G055300 RNA polymerase III RPC4 domain containing protein, expressed K03026: RPC4, DNA-directed RNA polymerase III subunit RPC4
10 Sobic.008G089100 armadillo/beta-catenin repeat family protein, putative, expressed -
11 Sobic.001G392300 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12820: DHX15, pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43
12 Sobic.004G200200 joka2, putative, expressed K17987: next to BRCA1 gene 1 protein
13 Sobic.008G087866 - -
14 Sobic.006G148100 DUF647 domain containing protein, putative, expressed -
15 Sobic.006G136400 eukaryotic initiation factor iso-4F subunit p82-34, putative, expressed K03260: translation initiation factor 4G
16 Sobic.003G408600 GYF domain containing protein, putative, expressed K18730: PERQ amino acid-rich with GYF domain-containing protein
17 Sobic.008G004600 ubiquitin-activating enzyme, putative, expressed K03178: UBE1, ubiquitin-activating enzyme E1
18 Sobic.001G207000 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
19 Sobic.001G121200 zinc finger, C3HC4 type domain containing protein, expressed -
20 Sobic.007G165600 aminopeptidase, putative, expressed K01256: aminopeptidase N


Gene co-expression network
sample Sobic009G056200 Sobic009G056200 Sobic005G172500 Sobic005G172500 Sobic009G056200--Sobic005G172500 Sobic001G194200 Sobic001G194200 Sobic009G056200--Sobic001G194200 Sobic001G227400 Sobic001G227400 Sobic009G056200--Sobic001G227400 Sobic006G055200 Sobic006G055200 Sobic009G056200--Sobic006G055200 Sobic003G195000 Sobic003G195000 Sobic009G056200--Sobic003G195000 Sobic007G207200 Sobic007G207200 Sobic009G056200--Sobic007G207200 Sobic008G063300 Sobic008G063300 Sobic009G056200--Sobic008G063300 Sobic002G142900 Sobic002G142900 Sobic009G056200--Sobic002G142900 Sobic006G055300 Sobic006G055300 Sobic009G056200--Sobic006G055300 Sobic004G131300 Sobic004G131300 Sobic005G172500--Sobic004G131300 Sobic006G148100 Sobic006G148100 Sobic005G172500--Sobic006G148100 Sobic005G172500--Sobic009G056200 Sobic001G493200 Sobic001G493200 Sobic005G172500--Sobic001G493200 Sobic005G172500--Sobic001G227400 Sobic002G371300 Sobic002G371300 Sobic005G172500--Sobic002G371300 Sobic005G172500--Sobic002G142900 Sobic003G408600 Sobic003G408600 Sobic005G172500--Sobic003G408600 Sobic004G257100 Sobic004G257100 Sobic005G172500--Sobic004G257100 Sobic004G291900 Sobic004G291900 Sobic001G194200--Sobic004G291900 Sobic001G194200--Sobic006G055200 Sobic005G001000 Sobic005G001000 Sobic001G194200--Sobic005G001000 Sobic010G010700 Sobic010G010700 Sobic001G194200--Sobic010G010700 Sobic004G276400 Sobic004G276400 Sobic001G194200--Sobic004G276400 Sobic001G289800 Sobic001G289800 Sobic001G194200--Sobic001G289800 Sobic008G001200 Sobic008G001200 Sobic001G194200--Sobic008G001200 Sobic010G206900 Sobic010G206900 Sobic001G194200--Sobic010G206900 Sobic004G034900 Sobic004G034900 Sobic001G194200--Sobic004G034900 Sobic009G044800 Sobic009G044800 Sobic001G227400--Sobic009G044800 Sobic007G218000 Sobic007G218000 Sobic001G227400--Sobic007G218000 Sobic001G227400--Sobic001G493200 Sobic001G493700 Sobic001G493700 Sobic001G227400--Sobic001G493700 Sobic006G088200 Sobic006G088200 Sobic001G227400--Sobic006G088200 Sobic009G084900 Sobic009G084900 Sobic001G227400--Sobic009G084900 Sobic001G227400--Sobic003G195000 Sobic001G227400--Sobic005G172500 Sobic001G227400--Sobic001G289800 Sobic006G055200--Sobic001G194200 Sobic006G055200--Sobic010G010700 Sobic006G055200--Sobic005G001000 Sobic006G055200--Sobic004G276400 Sobic006G055200--Sobic004G291900 Sobic003G186000 Sobic003G186000 Sobic006G055200--Sobic003G186000 Sobic006G055200--Sobic001G289800 Sobic004G263600 Sobic004G263600 Sobic006G055200--Sobic004G263600 Sobic001G002000 Sobic001G002000 Sobic006G055200--Sobic001G002000 Sobic003G195000--Sobic001G289800 Sobic003G195000--Sobic001G194200 Sobic009G053900 Sobic009G053900 Sobic003G195000--Sobic009G053900 Sobic002G146300 Sobic002G146300 Sobic003G195000--Sobic002G146300 Sobic002G275700 Sobic002G275700 Sobic003G195000--Sobic002G275700 Sobic003G195000--Sobic005G001000 Sobic003G195000--Sobic002G142900 Sobic001G289600 Sobic001G289600 Sobic003G195000--Sobic001G289600 Sobic001G192000 Sobic001G192000 Sobic003G195000--Sobic001G192000 Sobic001G166600 Sobic001G166600 Sobic007G207200--Sobic001G166600 Sobic001G219600 Sobic001G219600 Sobic007G207200--Sobic001G219600 Sobic002G317200 Sobic002G317200 Sobic007G207200--Sobic002G317200 Sobic010G166400 Sobic010G166400 Sobic007G207200--Sobic010G166400 Sobic001G407700 Sobic001G407700 Sobic007G207200--Sobic001G407700 Sobic007G207200--Sobic009G084900 Sobic007G207200--Sobic009G056200 Sobic009G047200 Sobic009G047200 Sobic007G207200--Sobic009G047200 Sobic010G116600 Sobic010G116600 Sobic007G207200--Sobic010G116600 Sobic004G140600 Sobic004G140600 Sobic008G063300--Sobic004G140600 Sobic001G433800 Sobic001G433800 Sobic008G063300--Sobic001G433800 Sobic006G096900 Sobic006G096900 Sobic008G063300--Sobic006G096900 Sobic003G360400 Sobic003G360400 Sobic008G063300--Sobic003G360400 Sobic003G095900 Sobic003G095900 Sobic008G063300--Sobic003G095900 Sobic010G123600 Sobic010G123600 Sobic008G063300--Sobic010G123600 Sobic003G188400 Sobic003G188400 Sobic008G063300--Sobic003G188400 Sobic009G177500 Sobic009G177500 Sobic008G063300--Sobic009G177500 Sobic010G059500 Sobic010G059500 Sobic008G063300--Sobic010G059500 Sobic002G142900--Sobic004G131300 Sobic001G263600 Sobic001G263600 Sobic002G142900--Sobic001G263600 Sobic002G133300 Sobic002G133300 Sobic002G142900--Sobic002G133300 Sobic002G142900--Sobic003G195000 Sobic007G054800 Sobic007G054800 Sobic002G142900--Sobic007G054800 Sobic005G162500 Sobic005G162500 Sobic002G142900--Sobic005G162500 Sobic003G104000 Sobic003G104000 Sobic002G142900--Sobic003G104000 Sobic002G256700 Sobic002G256700 Sobic002G142900--Sobic002G256700 Sobic002G335600 Sobic002G335600 Sobic002G142900--Sobic002G335600 Sobic006G055300--Sobic009G056200 Sobic001G455800 Sobic001G455800 Sobic006G055300--Sobic001G455800 Sobic001G509500 Sobic001G509500 Sobic006G055300--Sobic001G509500 Sobic001G103900 Sobic001G103900 Sobic006G055300--Sobic001G103900 Sobic006G055300--Sobic002G142900 Sobic007G071900 Sobic007G071900 Sobic006G055300--Sobic007G071900 Sobic006G200700 Sobic006G200700 Sobic006G055300--Sobic006G200700 Sobic007G009700 Sobic007G009700 Sobic006G055300--Sobic007G009700 Sobic006G055300--Sobic008G063300
Octagon: transcription factors


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