Gene annotation
Transcriptome id Sobic.001G121200.1
Synonym Sb01g010680
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt C5WNR5
Pfam PF13920 PF10269
Panther DB PTHR10044
NCBI CDD KOG4172; Predicted E3 ubiquitin ligase
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G73950 : Transmembrane Fragile-X-F-associated protein
RAP-DB (Rice) LOC_Os03g49900.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a017030 , Zm00025a007782
Brachypodium KQK13576 , PNT74246
Barley HORVU4Hr1G007020.5 , HORVU4Hr1G007020.4 , HORVU4Hr1G007020.3 , HORVU4Hr1G007020.2
Wheat TraesCS4A02G271200 , TraesCS4A02G271200 , TraesCS4D02G040200 , TraesCS4D02G040200 , TraesCS4D02G040200 , TraesCS4B02G042900
Populus PNT24096


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cDNA sequences
Sobic.001G121200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G390800 transcription factor HBP-1b, putative, expressed K14431: transcription factor TGA
2 Sobic.010G205800 palmitoyltransferase TIP1, putative, expressed K18932: palmitoyltransferase
3 Sobic.001G268200 zinc finger, C3HC4 type domain containing protein, expressed -
4 Sobic.009G113000 chaperone protein dnaJ 49, putative, expressed K09518: DnaJ homolog subfamily B member 12
5 Sobic.002G111000 peptidase, putative, expressed -
6 Sobic.010G147100 VHS and GAT domain containing protein, expressed -
7 Sobic.001G207000 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
8 Sobic.001G146800 expressed protein -
9 Sobic.009G056200 arginyl-tRNA synthetase, putative, expressed K01887: RARS, arginyl-tRNA synthetase
10 Sobic.006G199200 ara54-like RING finger protein, putative, expressed K11971: RNF14, E3 ubiquitin-protein ligase RNF14
11 Sobic.002G059300 OsFBX181 - F-box domain containing protein, expressed -
12 Sobic.004G200200 joka2, putative, expressed K17987: next to BRCA1 gene 1 protein
13 Sobic.006G160300 DNA binding protein, putative, expressed -
14 Sobic.001G241100 DNA-binding protein-like, putative, expressed K10624: E3 ubiquitin-protein ligase RBBP6
15 Sobic.003G086900 C2 domain containing protein, putative, expressed -
16 Sobic.003G195000 OsFtsH5 FtsH protease, homologue of AtFtsH4, expressed K08955: ATP-dependent metalloprotease
17 Sobic.004G347400 pumilio-family RNA binding protein, putative, expressed K17943: pumilio RNA-binding family
18 Sobic.010G020300 spastin, putative, expressed K13254: spastin
19 Sobic.010G224000 molybdenum cofactor sulfurase, putative, expressed K15631: molybdenum cofactor sulfurtransferase
20 Sobic.001G270400 OsPOP20 - Putative Prolyl Oligopeptidase homologue, expressed -


Gene co-expression network
sample Sobic001G121200 Sobic001G121200 Sobic001G390800 Sobic001G390800 Sobic001G121200--Sobic001G390800 Sobic010G205800 Sobic010G205800 Sobic001G121200--Sobic010G205800 Sobic001G268200 Sobic001G268200 Sobic001G121200--Sobic001G268200 Sobic009G113000 Sobic009G113000 Sobic001G121200--Sobic009G113000 Sobic002G111000 Sobic002G111000 Sobic001G121200--Sobic002G111000 Sobic010G147100 Sobic010G147100 Sobic001G121200--Sobic010G147100 Sobic001G207000 Sobic001G207000 Sobic001G121200--Sobic001G207000 Sobic001G146800 Sobic001G146800 Sobic001G121200--Sobic001G146800 Sobic009G056200 Sobic009G056200 Sobic001G121200--Sobic009G056200 Sobic001G390800--Sobic001G268200 Sobic001G390800--Sobic001G121200 Sobic003G313500 Sobic003G313500 Sobic001G390800--Sobic003G313500 Sobic001G390800--Sobic010G205800 Sobic001G085300 Sobic001G085300 Sobic001G390800--Sobic001G085300 Sobic001G390800--Sobic010G147100 Sobic007G075400 Sobic007G075400 Sobic001G390800--Sobic007G075400 Sobic010G139600 Sobic010G139600 Sobic001G390800--Sobic010G139600 Sobic001G050200 Sobic001G050200 Sobic001G390800--Sobic001G050200 Sobic010G205800--Sobic001G121200 Sobic010G205800--Sobic001G390800 Sobic001G124200 Sobic001G124200 Sobic010G205800--Sobic001G124200 Sobic001G007000 Sobic001G007000 Sobic010G205800--Sobic001G007000 Sobic001G000200 Sobic001G000200 Sobic010G205800--Sobic001G000200 Sobic002G262900 Sobic002G262900 Sobic010G205800--Sobic002G262900 Sobic004G274200 Sobic004G274200 Sobic010G205800--Sobic004G274200 Sobic006G199200 Sobic006G199200 Sobic010G205800--Sobic006G199200 Sobic001G079200 Sobic001G079200 Sobic010G205800--Sobic001G079200 Sobic001G268200--Sobic001G390800 Sobic010G013200 Sobic010G013200 Sobic001G268200--Sobic010G013200 Sobic001G268200--Sobic010G147100 Sobic001G268200--Sobic003G313500 Sobic001G268200--Sobic001G121200 Sobic001G268200--Sobic010G139600 Sobic001G268200--Sobic001G085300 Sobic001G194200 Sobic001G194200 Sobic001G268200--Sobic001G194200 Sobic009G053900 Sobic009G053900 Sobic001G268200--Sobic009G053900 Sobic003G118200 Sobic003G118200 Sobic009G113000--Sobic003G118200 Sobic004G264400 Sobic004G264400 Sobic009G113000--Sobic004G264400 Sobic009G113000--Sobic009G053900 Sobic009G113000--Sobic007G075400 Sobic004G347400 Sobic004G347400 Sobic009G113000--Sobic004G347400 Sobic009G113000--Sobic001G121200 Sobic004G331100 Sobic004G331100 Sobic009G113000--Sobic004G331100 Sobic004G200200 Sobic004G200200 Sobic009G113000--Sobic004G200200 Sobic009G113000--Sobic001G146800 Sobic001G207400 Sobic001G207400 Sobic002G111000--Sobic001G207400 Sobic002G111000--Sobic001G390800 Sobic001G016700 Sobic001G016700 Sobic002G111000--Sobic001G016700 Sobic002G111000--Sobic001G121200 Sobic003G365300 Sobic003G365300 Sobic002G111000--Sobic003G365300 Sobic002G430000 Sobic002G430000 Sobic002G111000--Sobic002G430000 Sobic002G111000--Sobic010G139600 Sobic002G111000--Sobic010G147100 Sobic001G137100 Sobic001G137100 Sobic002G111000--Sobic001G137100 Sobic003G316500 Sobic003G316500 Sobic010G147100--Sobic003G316500 Sobic010G278200 Sobic010G278200 Sobic010G147100--Sobic010G278200 Sobic010G074300 Sobic010G074300 Sobic010G147100--Sobic010G074300 Sobic010G147100--Sobic003G313500 Sobic010G147100--Sobic001G390800 Sobic002G311100 Sobic002G311100 Sobic010G147100--Sobic002G311100 Sobic010G147100--Sobic009G053900 Sobic010G147100--Sobic001G268200 Sobic010G147100--Sobic003G118200 Sobic006G041600 Sobic006G041600 Sobic001G207000--Sobic006G041600 Sobic009G044800 Sobic009G044800 Sobic001G207000--Sobic009G044800 Sobic002G045600 Sobic002G045600 Sobic001G207000--Sobic002G045600 Sobic007G105100 Sobic007G105100 Sobic001G207000--Sobic007G105100 Sobic001G207000--Sobic001G194200 Sobic008G118200 Sobic008G118200 Sobic001G207000--Sobic008G118200 Sobic003G195000 Sobic003G195000 Sobic001G207000--Sobic003G195000 Sobic008G089100 Sobic008G089100 Sobic001G207000--Sobic008G089100 Sobic010G123600 Sobic010G123600 Sobic001G207000--Sobic010G123600 Sobic001G058700 Sobic001G058700 Sobic001G146800--Sobic001G058700 Sobic001G146800--Sobic004G200200 Sobic001G498600 Sobic001G498600 Sobic001G146800--Sobic001G498600 Sobic001G146800--Sobic004G347400 Sobic010G112000 Sobic010G112000 Sobic001G146800--Sobic010G112000 Sobic001G178700 Sobic001G178700 Sobic001G146800--Sobic001G178700 Sobic004G113400 Sobic004G113400 Sobic001G146800--Sobic004G113400 Sobic006G131500 Sobic006G131500 Sobic001G146800--Sobic006G131500 Sobic007G172400 Sobic007G172400 Sobic001G146800--Sobic007G172400 Sobic005G172500 Sobic005G172500 Sobic009G056200--Sobic005G172500 Sobic009G056200--Sobic001G194200 Sobic001G227400 Sobic001G227400 Sobic009G056200--Sobic001G227400 Sobic006G055200 Sobic006G055200 Sobic009G056200--Sobic006G055200 Sobic009G056200--Sobic003G195000 Sobic007G207200 Sobic007G207200 Sobic009G056200--Sobic007G207200 Sobic008G063300 Sobic008G063300 Sobic009G056200--Sobic008G063300 Sobic002G142900 Sobic002G142900 Sobic009G056200--Sobic002G142900 Sobic006G055300 Sobic006G055300 Sobic009G056200--Sobic006G055300
Octagon: transcription factors


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