Gene annotation
Transcriptome id Sobic.008G063300.1,Sobic.008G063300.2
Synonym Sb08g005280
Functional annotation exonuclease, putative, expressed
UniProt A0A1B6PBP4
Pfam PF00929
Panther DB PTHR12801 PTHR12801:SF51
NCBI CDD KOG2248; 3'-5' exonuclease
KEGG Orthology K14570; REX1, REXO1, RNA exonuclease 1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G25800 : Polynucleotidyl transferase, ribonuclease H-like superfamily protein
RAP-DB (Rice) LOC_Os12g08740.1 : exonuclease, putative, expressed
MaizeGDB (Corn) Zm00025a025676 , Zm00025a054171
Brachypodium KQJ91954 , KQJ91955 , PNT65337 , PNT65338
Barley -
Wheat TraesCS3B02G345100 , TraesCS3B02G345100 , TraesCS3D02G310600 , TraesCS3D02G310600 , TraesCS3A02G320700
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.008G063300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G140600 exonuclease, putative, expressed K13288: orn, REX2, oligoribonuclease
2 Sobic.001G433800 lissencephaly type-1-like homology motif, putative, expressed -
3 Sobic.006G096900 expressed protein -
4 Sobic.003G360400 ulp1 protease family protein, putative, expressed K08596: sentrin-specific protease 7
5 Sobic.003G095900 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
6 Sobic.010G123600 WW domain containing protein, expressed -
7 Sobic.003G188400 glutamate dehydrogenase protein, putative, expressed K00262: E1.4.1.4, glutamate dehydrogenase (NADP+)
8 Sobic.009G177500 CCR4-NOT transcription factor, putative, expressed K12605: CNOT2, CCR4-NOT transcription complex subunit 2
9 Sobic.010G059500 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12818: DHX8, ATP-dependent RNA helicase DHX8/PRP22
10 Sobic.001G493200 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
11 Sobic.001G354600 SAP domain containing protein, expressed K12875: ACIN1, apoptotic chromatin condensation inducer in the nucleus
12 Sobic.004G185800 expressed protein -
13 Sobic.006G041600 WD domain, G-beta repeat domain containing protein, expressed K17985: activating molecule in BECN1-regulated autophagy protein 1
14 Sobic.002G133300 ZOS9-20 - C2H2 zinc finger protein, expressed K14400: pre-mRNA cleavage complex 2 protein Pcf11
15 Sobic.001G111850 - -
16 Sobic.001G227400 WD domain, G-beta repeat domain containing protein, expressed -
17 Sobic.009G044800 cullin, putative, expressed K03347: CUL1, cullin 1
18 Sobic.001G194200 diacylglycerol kinase, putative, expressed -
19 Sobic.009G084900 expressed protein -
20 Sobic.001G392300 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12820: DHX15, pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43


Gene co-expression network
sample Sobic008G063300 Sobic008G063300 Sobic004G140600 Sobic004G140600 Sobic008G063300--Sobic004G140600 Sobic001G433800 Sobic001G433800 Sobic008G063300--Sobic001G433800 Sobic006G096900 Sobic006G096900 Sobic008G063300--Sobic006G096900 Sobic003G360400 Sobic003G360400 Sobic008G063300--Sobic003G360400 Sobic003G095900 Sobic003G095900 Sobic008G063300--Sobic003G095900 Sobic010G123600 Sobic010G123600 Sobic008G063300--Sobic010G123600 Sobic003G188400 Sobic003G188400 Sobic008G063300--Sobic003G188400 Sobic009G177500 Sobic009G177500 Sobic008G063300--Sobic009G177500 Sobic010G059500 Sobic010G059500 Sobic008G063300--Sobic010G059500 Sobic001G227200 Sobic001G227200 Sobic004G140600--Sobic001G227200 Sobic004G140600--Sobic009G177500 Sobic004G140600--Sobic008G063300 Sobic009G132700 Sobic009G132700 Sobic004G140600--Sobic009G132700 Sobic001G455600 Sobic001G455600 Sobic004G140600--Sobic001G455600 Sobic010G139000 Sobic010G139000 Sobic004G140600--Sobic010G139000 Sobic002G343901 Sobic002G343901 Sobic004G140600--Sobic002G343901 Sobic001G219600 Sobic001G219600 Sobic004G140600--Sobic001G219600 Sobic004G140600--Sobic001G433800 Sobic010G112100 Sobic010G112100 Sobic001G433800--Sobic010G112100 Sobic001G433800--Sobic003G360400 Sobic007G063000 Sobic007G063000 Sobic001G433800--Sobic007G063000 Sobic005G112300 Sobic005G112300 Sobic001G433800--Sobic005G112300 Sobic004G242400 Sobic004G242400 Sobic001G433800--Sobic004G242400 Sobic002G133300 Sobic002G133300 Sobic001G433800--Sobic002G133300 Sobic001G363500 Sobic001G363500 Sobic001G433800--Sobic001G363500 Sobic006G252900 Sobic006G252900 Sobic001G433800--Sobic006G252900 Sobic006G041600 Sobic006G041600 Sobic001G433800--Sobic006G041600 Sobic006G096900--Sobic008G063300 Sobic006G096900--Sobic009G177500 Sobic006G096900--Sobic006G252900 Sobic006G096900--Sobic003G360400 Sobic006G096900--Sobic003G095900 Sobic006G056700 Sobic006G056700 Sobic006G096900--Sobic006G056700 Sobic006G096900--Sobic001G433800 Sobic001G384300 Sobic001G384300 Sobic006G096900--Sobic001G384300 Sobic009G044800 Sobic009G044800 Sobic006G096900--Sobic009G044800 Sobic003G360400--Sobic010G112100 Sobic002G154000 Sobic002G154000 Sobic003G360400--Sobic002G154000 Sobic001G354600 Sobic001G354600 Sobic003G360400--Sobic001G354600 Sobic003G360400--Sobic001G433800 Sobic003G389200 Sobic003G389200 Sobic003G360400--Sobic003G389200 Sobic003G360400--Sobic009G044800 Sobic003G360400--Sobic005G112300 Sobic003G360400--Sobic007G063000 Sobic009G256300 Sobic009G256300 Sobic003G360400--Sobic009G256300 Sobic003G095900--Sobic004G242400 Sobic003G095900--Sobic001G433800 Sobic003G095900--Sobic002G133300 Sobic001G089600 Sobic001G089600 Sobic003G095900--Sobic001G089600 Sobic006G088200 Sobic006G088200 Sobic003G095900--Sobic006G088200 Sobic003G095900--Sobic003G360400 Sobic009G256400 Sobic009G256400 Sobic003G095900--Sobic009G256400 Sobic004G276400 Sobic004G276400 Sobic003G095900--Sobic004G276400 Sobic001G289800 Sobic001G289800 Sobic003G095900--Sobic001G289800 Sobic010G010700 Sobic010G010700 Sobic010G123600--Sobic010G010700 Sobic010G123600--Sobic009G256300 Sobic003G170900 Sobic003G170900 Sobic010G123600--Sobic003G170900 Sobic005G167700 Sobic005G167700 Sobic010G123600--Sobic005G167700 Sobic010G123600--Sobic005G112300 Sobic010G123600--Sobic001G433800 Sobic010G123600--Sobic010G112100 Sobic001G194200 Sobic001G194200 Sobic010G123600--Sobic001G194200 Sobic008G001200 Sobic008G001200 Sobic010G123600--Sobic008G001200 Sobic003G188400--Sobic001G433800 Sobic001G063700 Sobic001G063700 Sobic003G188400--Sobic001G063700 Sobic003G188400--Sobic003G360400 Sobic003G188400--Sobic002G133300 Sobic003G188400--Sobic003G095900 Sobic002G317200 Sobic002G317200 Sobic003G188400--Sobic002G317200 Sobic007G159900 Sobic007G159900 Sobic003G188400--Sobic007G159900 Sobic003G188400--Sobic010G112100 Sobic001G311500 Sobic001G311500 Sobic003G188400--Sobic001G311500 Sobic009G177500--Sobic001G433800 Sobic009G177500--Sobic001G227200 Sobic009G177500--Sobic005G112300 Sobic009G177500--Sobic004G140600 Sobic008G047800 Sobic008G047800 Sobic009G177500--Sobic008G047800 Sobic009G177500--Sobic010G112100 Sobic007G090430 Sobic007G090430 Sobic009G177500--Sobic007G090430 Sobic001G392300 Sobic001G392300 Sobic009G177500--Sobic001G392300 Sobic009G177500--Sobic002G343901 Sobic009G084900 Sobic009G084900 Sobic010G059500--Sobic009G084900 Sobic009G131300 Sobic009G131300 Sobic010G059500--Sobic009G131300 Sobic001G035200 Sobic001G035200 Sobic010G059500--Sobic001G035200 Sobic004G096400 Sobic004G096400 Sobic010G059500--Sobic004G096400 Sobic006G234700 Sobic006G234700 Sobic010G059500--Sobic006G234700 Sobic001G145400 Sobic001G145400 Sobic010G059500--Sobic001G145400 Sobic010G034100 Sobic010G034100 Sobic010G059500--Sobic010G034100 Sobic006G077200 Sobic006G077200 Sobic010G059500--Sobic006G077200 Sobic001G493200 Sobic001G493200 Sobic010G059500--Sobic001G493200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.