Gene annotation
Transcriptome id Sobic.009G084900.1
Synonym Sb09g007880
Functional annotation expressed protein
UniProt C5YV63
Pfam PF13360 PF07774
Panther DB PTHR21573 PTHR21573:SF0
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G11560 : catalytics
RAP-DB (Rice) LOC_Os05g14170.1 : expressed protein
MaizeGDB (Corn) Zm00025a037565 , Zm00025a043184
Brachypodium PNT71594 , PNT71593 , KQK06973
Barley HORVU1Hr1G033270.4 , HORVU1Hr1G033270.2 , HORVU1Hr1G033270.3 , HORVU1Hr1G033270.1 , HORVU1Hr1G033270.6 , HORVU1Hr1G033270.7 , HORVU1Hr1G033270.5
Wheat TraesCS1B02G148400 , TraesCS1A02G133700 , TraesCS1A02G133700 , TraesCS1A02G133700 , TraesCS1A02G133700 , TraesCS1D02G124600 , TraesCS1D02G124600
Populus -


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cDNA sequences
Sobic.009G084900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G059500 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12818: DHX8, ATP-dependent RNA helicase DHX8/PRP22
2 Sobic.003G072200 zinc finger protein, putative, expressed K11978: E3 ubiquitin-protein ligase UBR3
3 Sobic.001G493200 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
4 Sobic.001G433800 lissencephaly type-1-like homology motif, putative, expressed -
5 Sobic.009G131300 cation-transporting ATPase, putative, expressed K14950: ATP13A1, manganese-transporting P-type ATPase
6 Sobic.002G133300 ZOS9-20 - C2H2 zinc finger protein, expressed K14400: pre-mRNA cleavage complex 2 protein Pcf11
7 Sobic.006G077200 ubiquitin interaction motif-containing protein, putative, expressed -
8 Sobic.008G082500 alanyl-tRNA synthetase, putative, expressed K01872: AARS, alanyl-tRNA synthetase
9 Sobic.004G260100 tetratricopeptide repeat, putative, expressed K03255: TIF31, protein TIF31
10 Sobic.010G185400 HEAT repeat family protein, putative, expressed K03456: serine/threonine-protein phosphatase 2A regulatory subunit A
11 Sobic.001G347500 expressed protein -
12 Sobic.007G042400 HEAT repeat family protein, putative, expressed -
13 Sobic.001G219600 importin-beta N-terminal domain containing protein, expressed K15436: TRPO3, transportin-3
14 Sobic.001G214600 expressed protein -
15 Sobic.002G397500 SAC3/GANP family protein, expressed -
16 Sobic.004G131300 expressed protein K12617: PATL1, DNA topoisomerase 2-associated protein PAT1
17 Sobic.002G429300 importin subunit beta, putative, expressed -
18 Sobic.004G096400 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
19 Sobic.001G263600 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
20 Sobic.001G002000 protein kinase domain containing protein, expressed -


Gene co-expression network
sample Sobic009G084900 Sobic009G084900 Sobic010G059500 Sobic010G059500 Sobic009G084900--Sobic010G059500 Sobic003G072200 Sobic003G072200 Sobic009G084900--Sobic003G072200 Sobic001G493200 Sobic001G493200 Sobic009G084900--Sobic001G493200 Sobic001G433800 Sobic001G433800 Sobic009G084900--Sobic001G433800 Sobic009G131300 Sobic009G131300 Sobic009G084900--Sobic009G131300 Sobic002G133300 Sobic002G133300 Sobic009G084900--Sobic002G133300 Sobic006G077200 Sobic006G077200 Sobic009G084900--Sobic006G077200 Sobic008G082500 Sobic008G082500 Sobic009G084900--Sobic008G082500 Sobic004G260100 Sobic004G260100 Sobic009G084900--Sobic004G260100 Sobic010G059500--Sobic009G084900 Sobic010G059500--Sobic009G131300 Sobic001G035200 Sobic001G035200 Sobic010G059500--Sobic001G035200 Sobic004G096400 Sobic004G096400 Sobic010G059500--Sobic004G096400 Sobic006G234700 Sobic006G234700 Sobic010G059500--Sobic006G234700 Sobic001G145400 Sobic001G145400 Sobic010G059500--Sobic001G145400 Sobic010G034100 Sobic010G034100 Sobic010G059500--Sobic010G034100 Sobic010G059500--Sobic006G077200 Sobic010G059500--Sobic001G493200 Sobic002G397500 Sobic002G397500 Sobic003G072200--Sobic002G397500 Sobic007G098500 Sobic007G098500 Sobic003G072200--Sobic007G098500 Sobic007G062800 Sobic007G062800 Sobic003G072200--Sobic007G062800 Sobic003G233400 Sobic003G233400 Sobic003G072200--Sobic003G233400 Sobic003G072200--Sobic009G084900 Sobic008G098900 Sobic008G098900 Sobic003G072200--Sobic008G098900 Sobic005G112300 Sobic005G112300 Sobic003G072200--Sobic005G112300 Sobic001G347500 Sobic001G347500 Sobic003G072200--Sobic001G347500 Sobic003G072200--Sobic002G133300 Sobic001G493200--Sobic009G084900 Sobic003G266001 Sobic003G266001 Sobic001G493200--Sobic003G266001 Sobic001G493200--Sobic010G059500 Sobic001G493200--Sobic001G433800 Sobic004G072100 Sobic004G072100 Sobic001G493200--Sobic004G072100 Sobic001G493200--Sobic004G096400 Sobic007G132100 Sobic007G132100 Sobic001G493200--Sobic007G132100 Sobic001G493200--Sobic006G077200 Sobic003G408600 Sobic003G408600 Sobic001G493200--Sobic003G408600 Sobic010G112100 Sobic010G112100 Sobic001G433800--Sobic010G112100 Sobic003G360400 Sobic003G360400 Sobic001G433800--Sobic003G360400 Sobic007G063000 Sobic007G063000 Sobic001G433800--Sobic007G063000 Sobic001G433800--Sobic005G112300 Sobic004G242400 Sobic004G242400 Sobic001G433800--Sobic004G242400 Sobic001G433800--Sobic002G133300 Sobic001G363500 Sobic001G363500 Sobic001G433800--Sobic001G363500 Sobic006G252900 Sobic006G252900 Sobic001G433800--Sobic006G252900 Sobic006G041600 Sobic006G041600 Sobic001G433800--Sobic006G041600 Sobic002G429300 Sobic002G429300 Sobic009G131300--Sobic002G429300 Sobic002G401500 Sobic002G401500 Sobic009G131300--Sobic002G401500 Sobic005G162500 Sobic005G162500 Sobic009G131300--Sobic005G162500 Sobic008G088872 Sobic008G088872 Sobic009G131300--Sobic008G088872 Sobic009G131300--Sobic010G059500 Sobic009G131300--Sobic008G098900 Sobic006G184900 Sobic006G184900 Sobic009G131300--Sobic006G184900 Sobic001G493700 Sobic001G493700 Sobic009G131300--Sobic001G493700 Sobic009G131300--Sobic009G084900 Sobic004G276400 Sobic004G276400 Sobic002G133300--Sobic004G276400 Sobic002G133300--Sobic001G433800 Sobic001G004400 Sobic001G004400 Sobic002G133300--Sobic001G004400 Sobic001G289800 Sobic001G289800 Sobic002G133300--Sobic001G289800 Sobic002G133300--Sobic003G072200 Sobic002G133300--Sobic002G397500 Sobic004G131300 Sobic004G131300 Sobic002G133300--Sobic004G131300 Sobic001G194200 Sobic001G194200 Sobic002G133300--Sobic001G194200 Sobic002G133300--Sobic001G493700 Sobic006G077200--Sobic009G084900 Sobic010G185400 Sobic010G185400 Sobic006G077200--Sobic010G185400 Sobic006G077200--Sobic010G059500 Sobic006G077200--Sobic001G145400 Sobic006G077200--Sobic001G493200 Sobic003G249600 Sobic003G249600 Sobic006G077200--Sobic003G249600 Sobic006G077200--Sobic008G082500 Sobic003G189600 Sobic003G189600 Sobic006G077200--Sobic003G189600 Sobic006G077200--Sobic004G096400 Sobic008G082500--Sobic009G084900 Sobic008G082500--Sobic010G185400 Sobic010G206300 Sobic010G206300 Sobic008G082500--Sobic010G206300 Sobic008G082500--Sobic006G077200 Sobic008G082500--Sobic010G059500 Sobic008G082500--Sobic001G493200 Sobic002G020700 Sobic002G020700 Sobic008G082500--Sobic002G020700 Sobic008G082500--Sobic001G145400 Sobic004G023100 Sobic004G023100 Sobic008G082500--Sobic004G023100 Sobic001G214600 Sobic001G214600 Sobic004G260100--Sobic001G214600 Sobic004G260100--Sobic009G084900 Sobic004G260100--Sobic002G397500 Sobic001G089600 Sobic001G089600 Sobic004G260100--Sobic001G089600 Sobic004G260100--Sobic001G493200 Sobic001G334700 Sobic001G334700 Sobic004G260100--Sobic001G334700 Sobic010G147833 Sobic010G147833 Sobic004G260100--Sobic010G147833 Sobic004G260100--Sobic004G023100 Sobic010G053600 Sobic010G053600 Sobic004G260100--Sobic010G053600
Octagon: transcription factors


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