Gene annotation
Transcriptome id Sobic.004G131300.3,Sobic.004G131300.1,Sobic.004G131300.2
Synonym
Functional annotation expressed protein
UniProt A0A194YPF1
Pfam -
Panther DB PTHR21551 PTHR21551:SF6
NCBI CDD -
KEGG Orthology K12617; PATL1, DNA topoisomerase 2-associated protein PAT1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G79090 : -
RAP-DB (Rice) LOC_Os02g19330.2 : expressed protein
MaizeGDB (Corn) Zm00025a019753
Brachypodium PNT65030 , PNT65031 , KQJ91234 , KQK20827 , KQK20826
Barley HORVU5Hr1G083360.7 , HORVU5Hr1G083360.6 , HORVU5Hr1G083360.3 , HORVU5Hr1G083360.2 , HORVU5Hr1G083360.1 , HORVU5Hr1G083360.5 , HORVU5Hr1G083360.4
Wheat TraesCS5A02G329400 , TraesCS5A02G329400 , TraesCS5D02G335200 , TraesCS5D02G335200 , TraesCS5B02G329500 , TraesCS5B02G329500 , TraesCS5B02G329500
Populus -


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cDNA sequences
Sobic.004G131300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G133300 ZOS9-20 - C2H2 zinc finger protein, expressed K14400: pre-mRNA cleavage complex 2 protein Pcf11
2 Sobic.002G142900 immunoglobulin/major histocompatibility complex, putative, expressed K12607: CCR4-NOT transcription complex subunit 10
3 Sobic.005G172500 WD repeat-containing protein, putative, expressed K08266: MLST8, target of rapamycin complex subunit LST8
4 Sobic.009G084900 expressed protein -
5 Sobic.004G256500 WD domain, G-beta repeat domain containing protein, expressed K12616: enhancer of mRNA-decapping protein 4
6 Sobic.010G059500 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12818: DHX8, ATP-dependent RNA helicase DHX8/PRP22
7 Sobic.007G054800 valyl-tRNA synthetase, putative, expressed K01873: VARS, valyl-tRNA synthetase
8 Sobic.006G136400 eukaryotic initiation factor iso-4F subunit p82-34, putative, expressed K03260: translation initiation factor 4G
9 Sobic.002G256700 ubiquitin carboxyl-terminal hydrolase family protein, expressed K11844: ubiquitin carboxyl-terminal hydrolase 16/45
10 Sobic.003G104000 expressed protein K15133: mediator of RNA polymerase II transcription subunit 17
11 Sobic.001G251100 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
12 Sobic.004G257100 transmembrane 9 superfamily member, putative, expressed -
13 Sobic.002G371700 signal recognition particle 68 kDa protein, putative, expressed K03107: signal recognition particle subunit SRP68
14 Sobic.004G135400 expressed protein -
15 Sobic.001G493200 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
16 Sobic.009G234700 protein of unknown function DUF1296 domain containing protein, expressed -
17 Sobic.001G004400 - K14290: XPO1, exportin-1
18 Sobic.001G493700 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed -
19 Sobic.001G145400 threonyl-tRNA synthetase, mitochondrial precursor, putative, expressed K01868: TARS, threonyl-tRNA synthetase
20 Sobic.001G433800 lissencephaly type-1-like homology motif, putative, expressed -


Gene co-expression network
sample Sobic004G131300 Sobic004G131300 Sobic002G133300 Sobic002G133300 Sobic004G131300--Sobic002G133300 Sobic002G142900 Sobic002G142900 Sobic004G131300--Sobic002G142900 Sobic005G172500 Sobic005G172500 Sobic004G131300--Sobic005G172500 Sobic009G084900 Sobic009G084900 Sobic004G131300--Sobic009G084900 Sobic004G256500 Sobic004G256500 Sobic004G131300--Sobic004G256500 Sobic010G059500 Sobic010G059500 Sobic004G131300--Sobic010G059500 Sobic007G054800 Sobic007G054800 Sobic004G131300--Sobic007G054800 Sobic006G136400 Sobic006G136400 Sobic004G131300--Sobic006G136400 Sobic002G256700 Sobic002G256700 Sobic004G131300--Sobic002G256700 Sobic004G276400 Sobic004G276400 Sobic002G133300--Sobic004G276400 Sobic001G433800 Sobic001G433800 Sobic002G133300--Sobic001G433800 Sobic001G004400 Sobic001G004400 Sobic002G133300--Sobic001G004400 Sobic001G289800 Sobic001G289800 Sobic002G133300--Sobic001G289800 Sobic003G072200 Sobic003G072200 Sobic002G133300--Sobic003G072200 Sobic002G397500 Sobic002G397500 Sobic002G133300--Sobic002G397500 Sobic002G133300--Sobic004G131300 Sobic001G194200 Sobic001G194200 Sobic002G133300--Sobic001G194200 Sobic001G493700 Sobic001G493700 Sobic002G133300--Sobic001G493700 Sobic002G142900--Sobic004G131300 Sobic001G263600 Sobic001G263600 Sobic002G142900--Sobic001G263600 Sobic002G142900--Sobic002G133300 Sobic003G195000 Sobic003G195000 Sobic002G142900--Sobic003G195000 Sobic002G142900--Sobic007G054800 Sobic005G162500 Sobic005G162500 Sobic002G142900--Sobic005G162500 Sobic003G104000 Sobic003G104000 Sobic002G142900--Sobic003G104000 Sobic002G142900--Sobic002G256700 Sobic002G335600 Sobic002G335600 Sobic002G142900--Sobic002G335600 Sobic005G172500--Sobic004G131300 Sobic006G148100 Sobic006G148100 Sobic005G172500--Sobic006G148100 Sobic009G056200 Sobic009G056200 Sobic005G172500--Sobic009G056200 Sobic001G493200 Sobic001G493200 Sobic005G172500--Sobic001G493200 Sobic001G227400 Sobic001G227400 Sobic005G172500--Sobic001G227400 Sobic002G371300 Sobic002G371300 Sobic005G172500--Sobic002G371300 Sobic005G172500--Sobic002G142900 Sobic003G408600 Sobic003G408600 Sobic005G172500--Sobic003G408600 Sobic004G257100 Sobic004G257100 Sobic005G172500--Sobic004G257100 Sobic009G084900--Sobic010G059500 Sobic009G084900--Sobic003G072200 Sobic009G084900--Sobic001G493200 Sobic009G084900--Sobic001G433800 Sobic009G131300 Sobic009G131300 Sobic009G084900--Sobic009G131300 Sobic009G084900--Sobic002G133300 Sobic006G077200 Sobic006G077200 Sobic009G084900--Sobic006G077200 Sobic008G082500 Sobic008G082500 Sobic009G084900--Sobic008G082500 Sobic004G260100 Sobic004G260100 Sobic009G084900--Sobic004G260100 Sobic004G256500--Sobic004G131300 Sobic009G234700 Sobic009G234700 Sobic004G256500--Sobic009G234700 Sobic001G145400 Sobic001G145400 Sobic004G256500--Sobic001G145400 Sobic004G256500--Sobic002G133300 Sobic004G256500--Sobic002G142900 Sobic004G053500 Sobic004G053500 Sobic004G256500--Sobic004G053500 Sobic002G371700 Sobic002G371700 Sobic004G256500--Sobic002G371700 Sobic001G287500 Sobic001G287500 Sobic004G256500--Sobic001G287500 Sobic001G087600 Sobic001G087600 Sobic004G256500--Sobic001G087600 Sobic010G059500--Sobic009G084900 Sobic010G059500--Sobic009G131300 Sobic001G035200 Sobic001G035200 Sobic010G059500--Sobic001G035200 Sobic004G096400 Sobic004G096400 Sobic010G059500--Sobic004G096400 Sobic006G234700 Sobic006G234700 Sobic010G059500--Sobic006G234700 Sobic010G059500--Sobic001G145400 Sobic010G034100 Sobic010G034100 Sobic010G059500--Sobic010G034100 Sobic010G059500--Sobic006G077200 Sobic010G059500--Sobic001G493200 Sobic003G221400 Sobic003G221400 Sobic007G054800--Sobic003G221400 Sobic001G110600 Sobic001G110600 Sobic007G054800--Sobic001G110600 Sobic007G054800--Sobic001G004400 Sobic007G054800--Sobic005G162500 Sobic006G280000 Sobic006G280000 Sobic007G054800--Sobic006G280000 Sobic007G054800--Sobic002G256700 Sobic007G054800--Sobic002G133300 Sobic007G054800--Sobic002G142900 Sobic007G054800--Sobic004G131300 Sobic008G004600 Sobic008G004600 Sobic006G136400--Sobic008G004600 Sobic004G178200 Sobic004G178200 Sobic006G136400--Sobic004G178200 Sobic006G208500 Sobic006G208500 Sobic006G136400--Sobic006G208500 Sobic006G136400--Sobic004G131300 Sobic004G039600 Sobic004G039600 Sobic006G136400--Sobic004G039600 Sobic006G126100 Sobic006G126100 Sobic006G136400--Sobic006G126100 Sobic002G262900 Sobic002G262900 Sobic006G136400--Sobic002G262900 Sobic001G447300 Sobic001G447300 Sobic006G136400--Sobic001G447300 Sobic006G136400--Sobic002G142900 Sobic002G256700--Sobic003G104000 Sobic002G256700--Sobic001G493700 Sobic002G256700--Sobic007G054800 Sobic001G251100 Sobic001G251100 Sobic002G256700--Sobic001G251100 Sobic002G256700--Sobic002G142900 Sobic002G256700--Sobic004G131300 Sobic002G256700--Sobic006G280000 Sobic002G256700--Sobic002G133300 Sobic001G117200 Sobic001G117200 Sobic002G256700--Sobic001G117200
Octagon: transcription factors


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