Gene annotation
Transcriptome id Sobic.002G256700.1
Synonym Sb02g029180, UBP2, ATUBP2
Functional annotation ubiquitin carboxyl-terminal hydrolase family protein, expressed
UniProt C5X4P2
Pfam PF02148 PF13423
Panther DB PTHR24006 PTHR24006:SF345
NCBI CDD KOG1873; Ubiquitin-specific protease
KEGG Orthology K11844; ubiquitin carboxyl-terminal hydrolase 16/45
Gene Ontology GO:0008270; zinc ion binding


Orthologs (automatic annotation)
TAIR AT1G04860 : ubiquitin-specific protease 2
RAP-DB (Rice) LOC_Os09g32740.1 : ubiquitin carboxyl-terminal hydrolase family protein, expressed
MaizeGDB (Corn) Zm00025a014294
Brachypodium KQJ99428 , KQJ99427 , KQJ90906 , KQJ90907 , PNT68596 , PNT68597 , PNT68595 , PNT68598 , PNT68599 , PNT64887 , PNT68600 , PNT68601
Barley HORVU5Hr1G075960.4 , HORVU5Hr1G075960.5 , HORVU5Hr1G075960.6 , HORVU5Hr1G075960.7 , HORVU5Hr1G075960.1 , HORVU5Hr1G075960.2 , HORVU5Hr1G075960.3
Wheat TraesCS5B02G282900 , TraesCS5B02G282900 , TraesCS5B02G282900 , TraesCS5D02G291500 , TraesCS5D02G291500 , TraesCS5A02G284200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G104000 expressed protein K15133: mediator of RNA polymerase II transcription subunit 17
2 Sobic.001G493700 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed -
3 Sobic.007G054800 valyl-tRNA synthetase, putative, expressed K01873: VARS, valyl-tRNA synthetase
4 Sobic.001G251100 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
5 Sobic.002G142900 immunoglobulin/major histocompatibility complex, putative, expressed K12607: CCR4-NOT transcription complex subunit 10
6 Sobic.004G131300 expressed protein K12617: PATL1, DNA topoisomerase 2-associated protein PAT1
7 Sobic.006G280000 transportin-2, putative, expressed K18752: TNPO1, IPO2, transportin-1
8 Sobic.002G133300 ZOS9-20 - C2H2 zinc finger protein, expressed K14400: pre-mRNA cleavage complex 2 protein Pcf11
9 Sobic.001G117200 AGC_AGC_other_GWLd.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
10 Sobic.006G088200 nonsense-mediated decay UPF3, putative, expressed K14328: UPF3, regulator of nonsense transcripts 3
11 Sobic.004G320500 expressed protein K14794: ribosomal RNA-processing protein 12
12 Sobic.005G162500 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7
13 Sobic.005G172500 WD repeat-containing protein, putative, expressed K08266: MLST8, target of rapamycin complex subunit LST8
14 Sobic.004G256500 WD domain, G-beta repeat domain containing protein, expressed K12616: enhancer of mRNA-decapping protein 4
15 Sobic.002G335600 eukaryotic translation initiation factor 4G, putative, expressed K03260: translation initiation factor 4G
16 Sobic.001G227400 WD domain, G-beta repeat domain containing protein, expressed -
17 Sobic.001G110600 HEAT repeat family protein, putative, expressed -
18 Sobic.002G179400 DNA binding protein, putative, expressed -
19 Sobic.007G163100 expressed protein K14972: PAXIP1, PAX-interacting protein 1
20 Sobic.001G191700 expressed protein -


Gene co-expression network
sample Sobic002G256700 Sobic002G256700 Sobic003G104000 Sobic003G104000 Sobic002G256700--Sobic003G104000 Sobic001G493700 Sobic001G493700 Sobic002G256700--Sobic001G493700 Sobic007G054800 Sobic007G054800 Sobic002G256700--Sobic007G054800 Sobic001G251100 Sobic001G251100 Sobic002G256700--Sobic001G251100 Sobic002G142900 Sobic002G142900 Sobic002G256700--Sobic002G142900 Sobic004G131300 Sobic004G131300 Sobic002G256700--Sobic004G131300 Sobic006G280000 Sobic006G280000 Sobic002G256700--Sobic006G280000 Sobic002G133300 Sobic002G133300 Sobic002G256700--Sobic002G133300 Sobic001G117200 Sobic001G117200 Sobic002G256700--Sobic001G117200 Sobic003G337300 Sobic003G337300 Sobic003G104000--Sobic003G337300 Sobic003G104000--Sobic002G256700 Sobic006G126100 Sobic006G126100 Sobic003G104000--Sobic006G126100 Sobic003G104000--Sobic001G251100 Sobic003G104000--Sobic002G142900 Sobic002G295500 Sobic002G295500 Sobic003G104000--Sobic002G295500 Sobic004G277200 Sobic004G277200 Sobic003G104000--Sobic004G277200 Sobic003G104000--Sobic004G131300 Sobic006G261400 Sobic006G261400 Sobic003G104000--Sobic006G261400 Sobic002G179400 Sobic002G179400 Sobic001G493700--Sobic002G179400 Sobic005G162500 Sobic005G162500 Sobic001G493700--Sobic005G162500 Sobic006G184900 Sobic006G184900 Sobic001G493700--Sobic006G184900 Sobic001G493700--Sobic002G133300 Sobic009G131300 Sobic009G131300 Sobic001G493700--Sobic009G131300 Sobic002G429300 Sobic002G429300 Sobic001G493700--Sobic002G429300 Sobic002G042600 Sobic002G042600 Sobic001G493700--Sobic002G042600 Sobic002G335600 Sobic002G335600 Sobic001G493700--Sobic002G335600 Sobic006G088200 Sobic006G088200 Sobic001G493700--Sobic006G088200 Sobic003G221400 Sobic003G221400 Sobic007G054800--Sobic003G221400 Sobic001G110600 Sobic001G110600 Sobic007G054800--Sobic001G110600 Sobic001G004400 Sobic001G004400 Sobic007G054800--Sobic001G004400 Sobic007G054800--Sobic005G162500 Sobic007G054800--Sobic006G280000 Sobic007G054800--Sobic002G256700 Sobic007G054800--Sobic002G133300 Sobic007G054800--Sobic002G142900 Sobic007G054800--Sobic004G131300 Sobic001G251100--Sobic003G104000 Sobic001G251100--Sobic002G256700 Sobic001G251100--Sobic004G131300 Sobic001G251100--Sobic002G133300 Sobic003G293300 Sobic003G293300 Sobic001G251100--Sobic003G293300 Sobic001G251100--Sobic007G054800 Sobic001G251100--Sobic001G493700 Sobic004G257100 Sobic004G257100 Sobic001G251100--Sobic004G257100 Sobic003G379200 Sobic003G379200 Sobic001G251100--Sobic003G379200 Sobic002G142900--Sobic004G131300 Sobic001G263600 Sobic001G263600 Sobic002G142900--Sobic001G263600 Sobic002G142900--Sobic002G133300 Sobic003G195000 Sobic003G195000 Sobic002G142900--Sobic003G195000 Sobic002G142900--Sobic007G054800 Sobic002G142900--Sobic005G162500 Sobic002G142900--Sobic003G104000 Sobic002G142900--Sobic002G256700 Sobic002G142900--Sobic002G335600 Sobic004G131300--Sobic002G133300 Sobic004G131300--Sobic002G142900 Sobic005G172500 Sobic005G172500 Sobic004G131300--Sobic005G172500 Sobic009G084900 Sobic009G084900 Sobic004G131300--Sobic009G084900 Sobic004G256500 Sobic004G256500 Sobic004G131300--Sobic004G256500 Sobic010G059500 Sobic010G059500 Sobic004G131300--Sobic010G059500 Sobic004G131300--Sobic007G054800 Sobic006G136400 Sobic006G136400 Sobic004G131300--Sobic006G136400 Sobic004G131300--Sobic002G256700 Sobic006G280000--Sobic007G054800 Sobic001G542500 Sobic001G542500 Sobic006G280000--Sobic001G542500 Sobic004G004300 Sobic004G004300 Sobic006G280000--Sobic004G004300 Sobic006G280000--Sobic002G256700 Sobic006G280000--Sobic003G337300 Sobic001G089600 Sobic001G089600 Sobic006G280000--Sobic001G089600 Sobic006G280000--Sobic003G104000 Sobic001G287500 Sobic001G287500 Sobic006G280000--Sobic001G287500 Sobic006G280000--Sobic001G117200 Sobic004G276400 Sobic004G276400 Sobic002G133300--Sobic004G276400 Sobic001G433800 Sobic001G433800 Sobic002G133300--Sobic001G433800 Sobic002G133300--Sobic001G004400 Sobic001G289800 Sobic001G289800 Sobic002G133300--Sobic001G289800 Sobic003G072200 Sobic003G072200 Sobic002G133300--Sobic003G072200 Sobic002G397500 Sobic002G397500 Sobic002G133300--Sobic002G397500 Sobic002G133300--Sobic004G131300 Sobic001G194200 Sobic001G194200 Sobic002G133300--Sobic001G194200 Sobic002G133300--Sobic001G493700 Sobic008G098900 Sobic008G098900 Sobic001G117200--Sobic008G098900 Sobic003G408600 Sobic003G408600 Sobic001G117200--Sobic003G408600 Sobic002G430000 Sobic002G430000 Sobic001G117200--Sobic002G430000 Sobic001G540400 Sobic001G540400 Sobic001G117200--Sobic001G540400 Sobic001G137000 Sobic001G137000 Sobic001G117200--Sobic001G137000 Sobic004G113400 Sobic004G113400 Sobic001G117200--Sobic004G113400 Sobic001G117200--Sobic001G542500 Sobic001G058700 Sobic001G058700 Sobic001G117200--Sobic001G058700 Sobic008G092600 Sobic008G092600 Sobic001G117200--Sobic008G092600
Octagon: transcription factors


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