Gene annotation
Transcriptome id Sobic.002G335600.4,Sobic.002G335600.2
Synonym CUM2, EIF4G
Functional annotation eukaryotic translation initiation factor 4G, putative, expressed
UniProt A0A1B6QEW9
Pfam PF02847 PF02854
Panther DB PTHR23253 PTHR23253:SF26
NCBI CDD KOG0401; Translation initiation factor 4F, ribosome/mRNA-bridging subunit (eIF-4G)
KEGG Orthology K03260; translation initiation factor 4G
Gene Ontology GO:0005515; protein binding GO:0003723RNA binding


Orthologs (automatic annotation)
TAIR AT3G60240 : eukaryotic translation initiation factor 4G
RAP-DB (Rice) LOC_Os07g36940.2 : eukaryotic translation initiation factor 4G, putative, expressed
MaizeGDB (Corn) Zm00025a014889 , Zm00025a056643 , Zm00025a021057 , Zm00025a048350
Brachypodium KQK15811 , KQK15812
Barley HORVU2Hr1G041770.1 , HORVU2Hr1G041770.2 , HORVU2Hr1G041760.2 , HORVU2Hr1G041760.3 , HORVU2Hr1G041760.1 , HORVU2Hr1G041760.4
Wheat TraesCS2D02G215300 , TraesCS2A02G209100 , TraesCS2B02G235100
Populus PNT49625


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G184900 tetratricopeptide repeat domain containing protein, expressed K15176: RNA polymerase-associated protein CTR9
2 Sobic.005G162500 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7
3 Sobic.006G032300 HECT-domain domain containing protein, expressed K10590: E3 ubiquitin-protein ligase TRIP12
4 Sobic.009G131300 cation-transporting ATPase, putative, expressed K14950: ATP13A1, manganese-transporting P-type ATPase
5 Sobic.002G429300 importin subunit beta, putative, expressed -
6 Sobic.001G493700 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed -
7 Sobic.008G088872 - -
8 Sobic.004G040500 expressed protein -
9 Sobic.004G053500 HEAT repeat family protein, putative, expressed K17263: CAND1, cullin-associated NEDD8-dissociated protein 1
10 Sobic.002G147600 ubiquitin-protein ligase 1, putative, expressed K10592: HUWE1, MULE, E3 ubiquitin-protein ligase HUWE1
11 Sobic.001G263600 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
12 Sobic.008G098900 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7
13 Sobic.002G142900 immunoglobulin/major histocompatibility complex, putative, expressed K12607: CCR4-NOT transcription complex subunit 10
14 Sobic.005G062200 transmembrane 9 superfamily member, putative, expressed K17087: transmembrane 9 superfamily member 3
15 Sobic.001G370900 expressed protein K11665: INO80, DNA helicase INO80
16 Sobic.001G273700 tRNA-splicing endonuclease positive effector-related, putative, expressed K10706: SETX, senataxin
17 Sobic.002G401500 WD domain, G-beta repeat domain containing protein, expressed K14005: protein transport protein SEC31
18 Sobic.005G034700 PHD-finger family protein, expressed -
19 Sobic.001G192000 autophagy protein 9, putative, expressed K17907: autophagy-related protein 9
20 Sobic.009G255700 SIT4 phosphatase-associated protein domain containing protein, expressed K15501: PPP6R3, serine/threonine-protein phosphatase 6 regulatory subunit 3


Gene co-expression network
sample Sobic002G335600 Sobic002G335600 Sobic006G184900 Sobic006G184900 Sobic002G335600--Sobic006G184900 Sobic005G162500 Sobic005G162500 Sobic002G335600--Sobic005G162500 Sobic006G032300 Sobic006G032300 Sobic002G335600--Sobic006G032300 Sobic009G131300 Sobic009G131300 Sobic002G335600--Sobic009G131300 Sobic002G429300 Sobic002G429300 Sobic002G335600--Sobic002G429300 Sobic001G493700 Sobic001G493700 Sobic002G335600--Sobic001G493700 Sobic008G088872 Sobic008G088872 Sobic002G335600--Sobic008G088872 Sobic004G040500 Sobic004G040500 Sobic002G335600--Sobic004G040500 Sobic004G053500 Sobic004G053500 Sobic002G335600--Sobic004G053500 Sobic006G184900--Sobic002G335600 Sobic006G184900--Sobic002G429300 Sobic006G184900--Sobic008G088872 Sobic002G042600 Sobic002G042600 Sobic006G184900--Sobic002G042600 Sobic001G370900 Sobic001G370900 Sobic006G184900--Sobic001G370900 Sobic006G184900--Sobic009G131300 Sobic006G184900--Sobic001G493700 Sobic002G179400 Sobic002G179400 Sobic006G184900--Sobic002G179400 Sobic005G062200 Sobic005G062200 Sobic006G184900--Sobic005G062200 Sobic005G162500--Sobic001G493700 Sobic005G162500--Sobic002G429300 Sobic005G162500--Sobic001G370900 Sobic005G162500--Sobic009G131300 Sobic005G162500--Sobic008G088872 Sobic003G186000 Sobic003G186000 Sobic005G162500--Sobic003G186000 Sobic008G098900 Sobic008G098900 Sobic005G162500--Sobic008G098900 Sobic004G276400 Sobic004G276400 Sobic005G162500--Sobic004G276400 Sobic005G162500--Sobic002G335600 Sobic006G032300--Sobic002G335600 Sobic006G032300--Sobic008G088872 Sobic006G032300--Sobic004G053500 Sobic007G018400 Sobic007G018400 Sobic006G032300--Sobic007G018400 Sobic001G273700 Sobic001G273700 Sobic006G032300--Sobic001G273700 Sobic006G032300--Sobic002G042600 Sobic001G191700 Sobic001G191700 Sobic006G032300--Sobic001G191700 Sobic006G032300--Sobic009G131300 Sobic006G032300--Sobic002G429300 Sobic009G131300--Sobic002G429300 Sobic002G401500 Sobic002G401500 Sobic009G131300--Sobic002G401500 Sobic009G131300--Sobic005G162500 Sobic009G131300--Sobic008G088872 Sobic010G059500 Sobic010G059500 Sobic009G131300--Sobic010G059500 Sobic009G131300--Sobic008G098900 Sobic009G131300--Sobic006G184900 Sobic009G131300--Sobic001G493700 Sobic009G084900 Sobic009G084900 Sobic009G131300--Sobic009G084900 Sobic002G429300--Sobic009G131300 Sobic002G429300--Sobic005G162500 Sobic002G429300--Sobic006G184900 Sobic001G263600 Sobic001G263600 Sobic002G429300--Sobic001G263600 Sobic002G429300--Sobic002G042600 Sobic002G429300--Sobic008G098900 Sobic002G429300--Sobic001G493700 Sobic002G429300--Sobic002G335600 Sobic002G429300--Sobic008G088872 Sobic001G493700--Sobic002G179400 Sobic001G493700--Sobic005G162500 Sobic001G493700--Sobic006G184900 Sobic002G133300 Sobic002G133300 Sobic001G493700--Sobic002G133300 Sobic001G493700--Sobic009G131300 Sobic001G493700--Sobic002G429300 Sobic001G493700--Sobic002G042600 Sobic001G493700--Sobic002G335600 Sobic006G088200 Sobic006G088200 Sobic001G493700--Sobic006G088200 Sobic008G088872--Sobic005G162500 Sobic008G088872--Sobic001G370900 Sobic008G088872--Sobic009G131300 Sobic008G088872--Sobic006G184900 Sobic008G088872--Sobic005G062200 Sobic008G088872--Sobic001G263600 Sobic008G088872--Sobic002G042600 Sobic008G088872--Sobic002G429300 Sobic008G088872--Sobic002G335600 Sobic008G092600 Sobic008G092600 Sobic004G040500--Sobic008G092600 Sobic002G147600 Sobic002G147600 Sobic004G040500--Sobic002G147600 Sobic004G040500--Sobic002G335600 Sobic004G040500--Sobic001G493700 Sobic003G072200 Sobic003G072200 Sobic004G040500--Sobic003G072200 Sobic003G233400 Sobic003G233400 Sobic004G040500--Sobic003G233400 Sobic004G023100 Sobic004G023100 Sobic004G040500--Sobic004G023100 Sobic001G287500 Sobic001G287500 Sobic004G040500--Sobic001G287500 Sobic003G171400 Sobic003G171400 Sobic004G040500--Sobic003G171400 Sobic004G053500--Sobic002G401500 Sobic004G053500--Sobic002G179400 Sobic004G053500--Sobic002G335600 Sobic006G166200 Sobic006G166200 Sobic004G053500--Sobic006G166200 Sobic004G053500--Sobic006G032300 Sobic005G133800 Sobic005G133800 Sobic004G053500--Sobic005G133800 Sobic002G340900 Sobic002G340900 Sobic004G053500--Sobic002G340900 Sobic003G296900 Sobic003G296900 Sobic004G053500--Sobic003G296900 Sobic004G053500--Sobic005G162500
Octagon: transcription factors


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