Gene annotation
Transcriptome id Sobic.002G275600.1,Sobic.002G275600.2,Sobic.002G275600.3
Synonym AtRFC1, Sb02g030910, RFC1
Functional annotation RFC1 - Putative clamp loader of PCNA, replication factor C subunit 1, expressed
UniProt A0A1W0W5Y8 , C5X671
Pfam PF00004 PF00533 PF08519
Panther DB PTHR23389 PTHR23389:SF10
NCBI CDD KOG1968; Replication factor C, subunit RFC1 (large subunit)
KEGG Orthology K10754; replication factor C subunit 1
Gene Ontology GO:0005524; ATP binding GO:0006260DNA replication GO:0005663DNA replication factor C complex GO:0003689DNA clamp loader activity


Orthologs (automatic annotation)
TAIR AT5G22010 : replication factor C1
RAP-DB (Rice) LOC_Os11g36390.1 : RFC1 - Putative clamp loader of PCNA, replication factor C subunit 1, expressed
MaizeGDB (Corn) Zm00025a015782
Brachypodium KQJ88150 , PNT63444
Barley HORVU7Hr1G091790.3 , HORVU7Hr1G091790.2 , HORVU7Hr1G091790.1 , HORVU7Hr1G091790.7 , HORVU7Hr1G091790.6 , HORVU7Hr1G091790.13 , HORVU7Hr1G091790.12 , HORVU7Hr1G091790.11 , HORVU7Hr1G091790.14 , HORVU7Hr1G091790.9 , HORVU7Hr1G091790.8 , HORVU7Hr1G091790.5 , HORVU7Hr1G091790.4
Wheat TraesCS7A02G386700 , TraesCS7A02G386700 , TraesCS7D02G383200 , TraesCS7B02G289500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G160100 RFC1 - Putative clamp loader of PCNA, replication factor C subunit 1, expressed K10754: replication factor C subunit 1
2 Sobic.009G247400 PX domain containing protein, putative, expressed K17925: sorting nexin-13
3 Sobic.008G014500 RNA recognition motif containing protein, expressed K13161: heterogeneous nuclear ribonucleoprotein R
4 Sobic.001G363500 DIRP family protein, putative, expressed -
5 Sobic.001G219600 importin-beta N-terminal domain containing protein, expressed K15436: TRPO3, transportin-3
6 Sobic.001G441400 transcription factor, putative, expressed K09060: plant G-box-binding factor
7 Sobic.002G397500 SAC3/GANP family protein, expressed -
8 Sobic.003G006400 metallo-beta-lactamase family protein, putative, expressed K00784: ribonuclease Z
9 Sobic.010G209400 WD domain, G-beta repeat domain containing protein, expressed K03130: transcription initiation factor TFIID subunit 5
10 Sobic.002G299700 ATGRIP/GRIP, putative, expressed -
11 Sobic.009G158100 calcium-binding mitochondrial protein anon-60Da, putative, expressed K17800: LETM1, LETM1 and EF-hand domain-containing protein 1, mitochondrial
12 Sobic.004G006900 OsFBX49 - F-box domain containing protein, expressed -
13 Sobic.003G095900 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
14 Sobic.004G322400 WD40-like, putative, expressed -
15 Sobic.001G089600 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
16 Sobic.002G317200 uncharacterized ACR, COG1590 family protein, expressed K15450: tRNA wybutosine-synthesizing protein 3
17 Sobic.010G116600 FHA domain containing protein, putative, expressed -
18 Sobic.006G208500 proteasome/cyclosome repeat containing protein, expressed K03032: PSMD1, 26S proteasome regulatory subunit N2
19 Sobic.001G170100 WD domain, G-beta repeat domain containing protein, expressed -
20 Sobic.004G135400 expressed protein -


Gene co-expression network
sample Sobic002G275600 Sobic002G275600 Sobic005G160100 Sobic005G160100 Sobic002G275600--Sobic005G160100 Sobic009G247400 Sobic009G247400 Sobic002G275600--Sobic009G247400 Sobic008G014500 Sobic008G014500 Sobic002G275600--Sobic008G014500 Sobic001G363500 Sobic001G363500 Sobic002G275600--Sobic001G363500 Sobic001G219600 Sobic001G219600 Sobic002G275600--Sobic001G219600 Sobic001G441400 Sobic001G441400 Sobic002G275600--Sobic001G441400 Sobic002G397500 Sobic002G397500 Sobic002G275600--Sobic002G397500 Sobic003G006400 Sobic003G006400 Sobic002G275600--Sobic003G006400 Sobic010G209400 Sobic010G209400 Sobic002G275600--Sobic010G209400 Sobic005G160100--Sobic002G275600 Sobic001G214600 Sobic001G214600 Sobic005G160100--Sobic001G214600 Sobic001G089600 Sobic001G089600 Sobic005G160100--Sobic001G089600 Sobic004G260100 Sobic004G260100 Sobic005G160100--Sobic004G260100 Sobic003G171500 Sobic003G171500 Sobic005G160100--Sobic003G171500 Sobic004G096400 Sobic004G096400 Sobic005G160100--Sobic004G096400 Sobic010G059500 Sobic010G059500 Sobic005G160100--Sobic010G059500 Sobic009G251200 Sobic009G251200 Sobic005G160100--Sobic009G251200 Sobic003G260400 Sobic003G260400 Sobic005G160100--Sobic003G260400 Sobic001G311500 Sobic001G311500 Sobic009G247400--Sobic001G311500 Sobic010G279450 Sobic010G279450 Sobic009G247400--Sobic010G279450 Sobic009G260500 Sobic009G260500 Sobic009G247400--Sobic009G260500 Sobic004G009600 Sobic004G009600 Sobic009G247400--Sobic004G009600 Sobic009G247400--Sobic001G214600 Sobic009G247400--Sobic001G363500 Sobic009G247400--Sobic001G219600 Sobic002G317200 Sobic002G317200 Sobic009G247400--Sobic002G317200 Sobic004G314000 Sobic004G314000 Sobic009G247400--Sobic004G314000 Sobic010G166400 Sobic010G166400 Sobic008G014500--Sobic010G166400 Sobic001G091400 Sobic001G091400 Sobic008G014500--Sobic001G091400 Sobic006G200700 Sobic006G200700 Sobic008G014500--Sobic006G200700 Sobic010G236400 Sobic010G236400 Sobic008G014500--Sobic010G236400 Sobic008G014500--Sobic002G275600 Sobic007G075900 Sobic007G075900 Sobic008G014500--Sobic007G075900 Sobic008G014500--Sobic010G209400 Sobic009G119000 Sobic009G119000 Sobic008G014500--Sobic009G119000 Sobic001G522600 Sobic001G522600 Sobic008G014500--Sobic001G522600 Sobic005G112300 Sobic005G112300 Sobic001G363500--Sobic005G112300 Sobic007G062800 Sobic007G062800 Sobic001G363500--Sobic007G062800 Sobic010G247800 Sobic010G247800 Sobic001G363500--Sobic010G247800 Sobic002G299700 Sobic002G299700 Sobic001G363500--Sobic002G299700 Sobic010G112100 Sobic010G112100 Sobic001G363500--Sobic010G112100 Sobic004G242400 Sobic004G242400 Sobic001G363500--Sobic004G242400 Sobic001G433800 Sobic001G433800 Sobic001G363500--Sobic001G433800 Sobic001G363500--Sobic010G279450 Sobic010G139000 Sobic010G139000 Sobic001G363500--Sobic010G139000 Sobic001G219600--Sobic009G260500 Sobic002G309600 Sobic002G309600 Sobic001G219600--Sobic002G309600 Sobic001G219600--Sobic002G317200 Sobic009G047200 Sobic009G047200 Sobic001G219600--Sobic009G047200 Sobic003G141500 Sobic003G141500 Sobic001G219600--Sobic003G141500 Sobic001G219600--Sobic010G139000 Sobic001G071400 Sobic001G071400 Sobic001G219600--Sobic001G071400 Sobic001G219600--Sobic002G397500 Sobic001G020000 Sobic001G020000 Sobic001G219600--Sobic001G020000 Sobic001G451400 Sobic001G451400 Sobic001G441400--Sobic001G451400 Sobic003G404500 Sobic003G404500 Sobic001G441400--Sobic003G404500 Sobic006G252900 Sobic006G252900 Sobic001G441400--Sobic006G252900 Sobic005G027400 Sobic005G027400 Sobic001G441400--Sobic005G027400 Sobic009G165700 Sobic009G165700 Sobic001G441400--Sobic009G165700 Sobic001G441400--Sobic001G363500 Sobic003G102400 Sobic003G102400 Sobic001G441400--Sobic003G102400 Sobic001G441400--Sobic002G299700 Sobic004G351100 Sobic004G351100 Sobic001G441400--Sobic004G351100 Sobic003G408600 Sobic003G408600 Sobic002G397500--Sobic003G408600 Sobic002G397500--Sobic007G062800 Sobic002G397500--Sobic005G112300 Sobic001G540400 Sobic001G540400 Sobic002G397500--Sobic001G540400 Sobic009G109200 Sobic009G109200 Sobic002G397500--Sobic009G109200 Sobic003G072200 Sobic003G072200 Sobic002G397500--Sobic003G072200 Sobic002G397500--Sobic004G242400 Sobic004G276400 Sobic004G276400 Sobic002G397500--Sobic004G276400 Sobic002G397500--Sobic010G112100 Sobic006G208500 Sobic006G208500 Sobic003G006400--Sobic006G208500 Sobic003G006400--Sobic006G200700 Sobic003G006400--Sobic002G275600 Sobic001G369000 Sobic001G369000 Sobic003G006400--Sobic001G369000 Sobic006G138000 Sobic006G138000 Sobic003G006400--Sobic006G138000 Sobic010G151900 Sobic010G151900 Sobic003G006400--Sobic010G151900 Sobic001G145400 Sobic001G145400 Sobic003G006400--Sobic001G145400 Sobic006G077200 Sobic006G077200 Sobic003G006400--Sobic006G077200 Sobic010G007100 Sobic010G007100 Sobic003G006400--Sobic010G007100 Sobic010G209400--Sobic010G236400 Sobic004G084300 Sobic004G084300 Sobic010G209400--Sobic004G084300 Sobic009G210500 Sobic009G210500 Sobic010G209400--Sobic009G210500 Sobic001G511500 Sobic001G511500 Sobic010G209400--Sobic001G511500 Sobic001G542700 Sobic001G542700 Sobic010G209400--Sobic001G542700 Sobic009G040600 Sobic009G040600 Sobic010G209400--Sobic009G040600 Sobic003G038500 Sobic003G038500 Sobic010G209400--Sobic003G038500 Sobic008G131000 Sobic008G131000 Sobic010G209400--Sobic008G131000 Sobic008G047800 Sobic008G047800 Sobic010G209400--Sobic008G047800
Octagon: transcription factors


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