Gene annotation
Transcriptome id Sobic.003G126600.1
Synonym REP, AthREP
Functional annotation rab GDP dissociation inhibitor alpha, putative, expressed
UniProt A0A1B6Q2T8
Pfam PF00996
Panther DB PTHR11787 PTHR11787:SF4
NCBI CDD KOG4405; GDP dissociation inhibitor
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G06540 : Rab escort protein
RAP-DB (Rice) LOC_Os01g16354.1 : rab GDP dissociation inhibitor alpha, putative, expressed
MaizeGDB (Corn) Zm00025a024096 , Zm00025a035246
Brachypodium KQK03838 , PNT61246
Barley HORVU3Hr1G038200.8 , HORVU3Hr1G038200.9 , HORVU3Hr1G038200.14 , HORVU3Hr1G038200.12 , HORVU3Hr1G038200.13 , HORVU3Hr1G038200.10 , HORVU3Hr1G038200.11 , HORVU3Hr1G038200.4 , HORVU3Hr1G038200.5 , HORVU3Hr1G038200.6 , HORVU3Hr1G038200.7 , HORVU3Hr1G038200.1 , HORVU3Hr1G038200.2 , HORVU3Hr1G038200.3
Wheat TraesCS3A02G185700 , TraesCS3D02G189700 , TraesCS3B02G215300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G039600 proteasome/cyclosome repeat containing protein, expressed K03028: PSMD2, 26S proteasome regulatory subunit N1
2 Sobic.003G249600 vacuolar protein sorting-associated protein 16, putative, expressed -
3 Sobic.009G229600 tRNA-binding arm, putative, expressed -
4 Sobic.003G187500 ATP-binding region, ATPase-like domain containing protein, expressed -
5 Sobic.010G053800 AP-1 complex subunit gamma-1, putative, expressed K12391: AP-1 complex subunit gamma-1
6 Sobic.001G518400 EF hand family protein, putative, expressed -
7 Sobic.001G369000 adapitin protein, putative, expressed K12392: AP-1 complex subunit beta-1
8 Sobic.003G187200 phox domain-containing protein, putative, expressed -
9 Sobic.004G072100 centromere/kinetochore protein zw10, putative, expressed K11578: ZW10, protein transport protein DSL1/ZW10
10 Sobic.001G170100 WD domain, G-beta repeat domain containing protein, expressed -
11 Sobic.001G335900 vacuolar protein sorting-associated protein 52, putative, expressed -
12 Sobic.010G275500 EF hand family protein, putative, expressed -
13 Sobic.007G120500 Sec1 family transport protein, putative, expressed K12479: vacuolar protein sorting-associated protein 45
14 Sobic.006G012500 protein transport protein Sec24-like, putative, expressed K14007: protein transport protein SEC24
15 Sobic.005G216300 RNA recognition motif containing protein, expressed K12837: splicing factor U2AF 65 kDa subunit
16 Sobic.006G126100 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
17 Sobic.010G147833 - -
18 Sobic.008G092300 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
19 Sobic.006G138000 expressed protein -
20 Sobic.001G362200 DHHC zinc finger domain containing protein, expressed K18932: palmitoyltransferase


Gene co-expression network
sample Sobic003G126600 Sobic003G126600 Sobic004G039600 Sobic004G039600 Sobic003G126600--Sobic004G039600 Sobic003G249600 Sobic003G249600 Sobic003G126600--Sobic003G249600 Sobic009G229600 Sobic009G229600 Sobic003G126600--Sobic009G229600 Sobic003G187500 Sobic003G187500 Sobic003G126600--Sobic003G187500 Sobic010G053800 Sobic010G053800 Sobic003G126600--Sobic010G053800 Sobic001G518400 Sobic001G518400 Sobic003G126600--Sobic001G518400 Sobic001G369000 Sobic001G369000 Sobic003G126600--Sobic001G369000 Sobic003G187200 Sobic003G187200 Sobic003G126600--Sobic003G187200 Sobic004G072100 Sobic004G072100 Sobic003G126600--Sobic004G072100 Sobic006G012500 Sobic006G012500 Sobic004G039600--Sobic006G012500 Sobic004G039600--Sobic001G369000 Sobic007G132100 Sobic007G132100 Sobic004G039600--Sobic007G132100 Sobic008G099800 Sobic008G099800 Sobic004G039600--Sobic008G099800 Sobic006G126100 Sobic006G126100 Sobic004G039600--Sobic006G126100 Sobic004G039600--Sobic010G053800 Sobic006G131000 Sobic006G131000 Sobic004G039600--Sobic006G131000 Sobic001G534800 Sobic001G534800 Sobic004G039600--Sobic001G534800 Sobic007G120500 Sobic007G120500 Sobic004G039600--Sobic007G120500 Sobic006G077200 Sobic006G077200 Sobic003G249600--Sobic006G077200 Sobic004G096400 Sobic004G096400 Sobic003G249600--Sobic004G096400 Sobic003G249600--Sobic007G120500 Sobic003G249600--Sobic007G132100 Sobic003G249600--Sobic003G126600 Sobic003G249600--Sobic004G072100 Sobic004G322400 Sobic004G322400 Sobic003G249600--Sobic004G322400 Sobic008G124800 Sobic008G124800 Sobic003G249600--Sobic008G124800 Sobic003G249600--Sobic004G039600 Sobic009G049400 Sobic009G049400 Sobic009G229600--Sobic009G049400 Sobic009G229600--Sobic001G369000 Sobic001G335900 Sobic001G335900 Sobic009G229600--Sobic001G335900 Sobic003G427600 Sobic003G427600 Sobic009G229600--Sobic003G427600 Sobic003G270600 Sobic003G270600 Sobic009G229600--Sobic003G270600 Sobic006G202200 Sobic006G202200 Sobic009G229600--Sobic006G202200 Sobic009G229600--Sobic001G518400 Sobic009G229600--Sobic004G039600 Sobic009G229600--Sobic007G120500 Sobic003G187500--Sobic010G053800 Sobic003G187500--Sobic004G072100 Sobic003G187500--Sobic007G132100 Sobic002G310200 Sobic002G310200 Sobic003G187500--Sobic002G310200 Sobic010G275500 Sobic010G275500 Sobic003G187500--Sobic010G275500 Sobic008G047800 Sobic008G047800 Sobic003G187500--Sobic008G047800 Sobic003G187500--Sobic004G039600 Sobic003G187500--Sobic006G012500 Sobic010G236400 Sobic010G236400 Sobic003G187500--Sobic010G236400 Sobic010G053800--Sobic006G012500 Sobic010G053800--Sobic010G275500 Sobic010G053800--Sobic004G072100 Sobic001G155000 Sobic001G155000 Sobic010G053800--Sobic001G155000 Sobic010G053800--Sobic003G187500 Sobic010G053800--Sobic008G047800 Sobic010G116600 Sobic010G116600 Sobic010G053800--Sobic010G116600 Sobic006G163800 Sobic006G163800 Sobic010G053800--Sobic006G163800 Sobic010G053800--Sobic004G039600 Sobic001G170100 Sobic001G170100 Sobic001G518400--Sobic001G170100 Sobic006G138000 Sobic006G138000 Sobic001G518400--Sobic006G138000 Sobic001G518400--Sobic001G335900 Sobic001G078100 Sobic001G078100 Sobic001G518400--Sobic001G078100 Sobic001G518400--Sobic009G229600 Sobic001G518400--Sobic010G275500 Sobic001G518400--Sobic006G202200 Sobic001G518400--Sobic003G126600 Sobic001G518400--Sobic001G369000 Sobic001G369000--Sobic004G039600 Sobic001G369000--Sobic001G335900 Sobic001G369000--Sobic007G120500 Sobic003G240700 Sobic003G240700 Sobic001G369000--Sobic003G240700 Sobic001G369000--Sobic006G163800 Sobic001G369000--Sobic006G138000 Sobic001G369000--Sobic009G049400 Sobic001G426600 Sobic001G426600 Sobic001G369000--Sobic001G426600 Sobic001G369000--Sobic009G229600 Sobic010G204400 Sobic010G204400 Sobic003G187200--Sobic010G204400 Sobic004G345700 Sobic004G345700 Sobic003G187200--Sobic004G345700 Sobic003G187200--Sobic004G039600 Sobic003G187200--Sobic007G132100 Sobic006G195700 Sobic006G195700 Sobic003G187200--Sobic006G195700 Sobic003G187200--Sobic006G163800 Sobic002G378200 Sobic002G378200 Sobic003G187200--Sobic002G378200 Sobic003G187200--Sobic003G187500 Sobic003G187200--Sobic010G053800 Sobic007G218000 Sobic007G218000 Sobic004G072100--Sobic007G218000 Sobic004G072100--Sobic010G053800 Sobic004G072100--Sobic010G275500 Sobic004G072100--Sobic007G132100 Sobic004G072100--Sobic006G012500 Sobic010G069100 Sobic010G069100 Sobic004G072100--Sobic010G069100 Sobic004G072100--Sobic010G116600 Sobic004G072100--Sobic008G047800 Sobic004G072100--Sobic001G155000
Octagon: transcription factors


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