Gene annotation
Transcriptome id Sobic.004G275700.1
Synonym Sb04g031270
Functional annotation adaptor complexes medium subunit family domain containing protein, expressed
UniProt C5Y0S2
Pfam PF00928
Panther DB PTHR10529 PTHR10529:SF224
NCBI CDD -
KEGG Orthology K11826; AP-2 complex subunit mu-1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G46630 : Clathrin adaptor complexes medium subunit family protein
RAP-DB (Rice) LOC_Os02g46510.1 : adaptor complexes medium subunit family domain containing protein, expressed
MaizeGDB (Corn) Zm00025a021598
Brachypodium KQK00836
Barley HORVU6Hr1G066890.4 , HORVU6Hr1G066890.3 , HORVU6Hr1G066890.2 , HORVU6Hr1G066890.1
Wheat TraesCS6D02G251100 , TraesCS6D02G251100 , TraesCS6B02G290800 , TraesCS6A02G263800
Populus PNT54474 , PNT44539 , PNT44537 , PNT44538


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cDNA sequences
Sobic.004G275700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G199100 peptidase, M24 family protein, putative, expressed K01265: methionyl aminopeptidase
2 Sobic.001G091300 HTH DNA-binding protein, putative, expressed -
3 Sobic.009G075800 serine/threonine protein phosphatase 5, putative, expressed K04460: serine/threonine-protein phosphatase 5
4 Sobic.002G262900 farnesyltransferase/geranylgeranyltransferase type-1 subunitalpha, putative, expressed K05955: protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha
5 Sobic.001G007000 -(PubMedID : 26976818)@4-nitrophenylphosphatase, putative, expressed K19269: PGP, phosphoglycolate phosphatase
6 Sobic.010G020400 HEAT repeat family protein, putative, expressed K03456: serine/threonine-protein phosphatase 2A regulatory subunit A
7 Sobic.002G008800 PTEN, putative, expressed K01110: phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN
8 Sobic.003G365300 sorting nexin 1, putative, expressed K17917: sorting nexin-1/2
9 Sobic.003G012200 tRNA synthetases class II domain containing protein, expressed K01876: aspartyl-tRNA synthetase
10 Sobic.009G228700 expressed protein -
11 Sobic.003G338500 endoplasmic reticulum-Golgi intermediate compartment protein 3, putative, expressed -
12 Sobic.010G261600 ubiquitin interaction motif family protein, expressed -
13 Sobic.004G039600 proteasome/cyclosome repeat containing protein, expressed K03028: PSMD2, 26S proteasome regulatory subunit N1
14 Sobic.006G136400 eukaryotic initiation factor iso-4F subunit p82-34, putative, expressed K03260: translation initiation factor 4G
15 Sobic.001G261436 - -
16 Sobic.002G226900 zinc-binding alcohol dehydrogenase domain-containing protein 2, putative, expressed K07119: PTGR3, prostaglandin reductase 3
17 Sobic.010G164000 FYVE zinc finger domain containing protein, expressed -
18 Sobic.001G085100 expressed protein -
19 Sobic.009G207000 protein of unknown function DUF502 domain containing protein, expressed -
20 Sobic.004G066200 ubiquitin fusion degradation protein, putative, expressed K14016: ubiquitin fusion degradation protein 1


Gene co-expression network
sample Sobic004G275700 Sobic004G275700 Sobic001G199100 Sobic001G199100 Sobic004G275700--Sobic001G199100 Sobic001G091300 Sobic001G091300 Sobic004G275700--Sobic001G091300 Sobic009G075800 Sobic009G075800 Sobic004G275700--Sobic009G075800 Sobic002G262900 Sobic002G262900 Sobic004G275700--Sobic002G262900 Sobic001G007000 Sobic001G007000 Sobic004G275700--Sobic001G007000 Sobic010G020400 Sobic010G020400 Sobic004G275700--Sobic010G020400 Sobic002G008800 Sobic002G008800 Sobic004G275700--Sobic002G008800 Sobic003G365300 Sobic003G365300 Sobic004G275700--Sobic003G365300 Sobic003G012200 Sobic003G012200 Sobic004G275700--Sobic003G012200 Sobic001G199100--Sobic003G012200 Sobic001G199100--Sobic004G275700 Sobic001G199100--Sobic009G075800 Sobic009G207000 Sobic009G207000 Sobic001G199100--Sobic009G207000 Sobic008G093000 Sobic008G093000 Sobic001G199100--Sobic008G093000 Sobic001G199100--Sobic001G091300 Sobic002G226900 Sobic002G226900 Sobic001G199100--Sobic002G226900 Sobic004G206700 Sobic004G206700 Sobic001G199100--Sobic004G206700 Sobic004G348300 Sobic004G348300 Sobic001G199100--Sobic004G348300 Sobic009G228700 Sobic009G228700 Sobic001G091300--Sobic009G228700 Sobic003G312200 Sobic003G312200 Sobic001G091300--Sobic003G312200 Sobic001G091300--Sobic004G275700 Sobic004G066200 Sobic004G066200 Sobic001G091300--Sobic004G066200 Sobic001G085100 Sobic001G085100 Sobic001G091300--Sobic001G085100 Sobic001G512300 Sobic001G512300 Sobic001G091300--Sobic001G512300 Sobic001G261436 Sobic001G261436 Sobic001G091300--Sobic001G261436 Sobic001G091300--Sobic001G199100 Sobic002G303600 Sobic002G303600 Sobic001G091300--Sobic002G303600 Sobic009G222500 Sobic009G222500 Sobic009G075800--Sobic009G222500 Sobic009G075800--Sobic004G275700 Sobic009G075800--Sobic010G020400 Sobic009G075800--Sobic001G199100 Sobic008G004600 Sobic008G004600 Sobic009G075800--Sobic008G004600 Sobic009G075800--Sobic003G012200 Sobic006G136400 Sobic006G136400 Sobic009G075800--Sobic006G136400 Sobic001G392300 Sobic001G392300 Sobic009G075800--Sobic001G392300 Sobic007G071900 Sobic007G071900 Sobic009G075800--Sobic007G071900 Sobic002G262900--Sobic002G008800 Sobic002G262900--Sobic004G275700 Sobic010G164000 Sobic010G164000 Sobic002G262900--Sobic010G164000 Sobic002G262900--Sobic006G136400 Sobic004G039600 Sobic004G039600 Sobic002G262900--Sobic004G039600 Sobic010G205800 Sobic010G205800 Sobic002G262900--Sobic010G205800 Sobic010G261600 Sobic010G261600 Sobic002G262900--Sobic010G261600 Sobic003G155900 Sobic003G155900 Sobic002G262900--Sobic003G155900 Sobic001G124200 Sobic001G124200 Sobic002G262900--Sobic001G124200 Sobic009G068500 Sobic009G068500 Sobic001G007000--Sobic009G068500 Sobic010G251000 Sobic010G251000 Sobic001G007000--Sobic010G251000 Sobic001G007000--Sobic001G392300 Sobic002G359400 Sobic002G359400 Sobic001G007000--Sobic002G359400 Sobic004G353200 Sobic004G353200 Sobic001G007000--Sobic004G353200 Sobic001G007000--Sobic010G205800 Sobic008G046500 Sobic008G046500 Sobic001G007000--Sobic008G046500 Sobic001G080700 Sobic001G080700 Sobic001G007000--Sobic001G080700 Sobic001G031100 Sobic001G031100 Sobic001G007000--Sobic001G031100 Sobic002G020700 Sobic002G020700 Sobic010G020400--Sobic002G020700 Sobic001G049400 Sobic001G049400 Sobic010G020400--Sobic001G049400 Sobic003G338500 Sobic003G338500 Sobic010G020400--Sobic003G338500 Sobic001G014800 Sobic001G014800 Sobic010G020400--Sobic001G014800 Sobic010G020400--Sobic002G008800 Sobic008G055900 Sobic008G055900 Sobic010G020400--Sobic008G055900 Sobic008G033500 Sobic008G033500 Sobic010G020400--Sobic008G033500 Sobic001G333100 Sobic001G333100 Sobic010G020400--Sobic001G333100 Sobic010G223300 Sobic010G223300 Sobic010G020400--Sobic010G223300 Sobic002G008800--Sobic010G261600 Sobic002G008800--Sobic010G020400 Sobic002G008800--Sobic002G262900 Sobic002G008800--Sobic010G223300 Sobic001G382600 Sobic001G382600 Sobic002G008800--Sobic001G382600 Sobic004G177300 Sobic004G177300 Sobic002G008800--Sobic004G177300 Sobic002G008800--Sobic004G275700 Sobic002G008800--Sobic001G333100 Sobic002G008800--Sobic008G055900 Sobic001G390800 Sobic001G390800 Sobic003G365300--Sobic001G390800 Sobic006G002000 Sobic006G002000 Sobic003G365300--Sobic006G002000 Sobic006G082400 Sobic006G082400 Sobic003G365300--Sobic006G082400 Sobic003G365300--Sobic004G275700 Sobic002G111000 Sobic002G111000 Sobic003G365300--Sobic002G111000 Sobic001G203900 Sobic001G203900 Sobic003G365300--Sobic001G203900 Sobic003G365300--Sobic009G068500 Sobic003G006300 Sobic003G006300 Sobic003G365300--Sobic003G006300 Sobic001G107600 Sobic001G107600 Sobic003G365300--Sobic001G107600 Sobic003G012200--Sobic001G199100 Sobic003G344900 Sobic003G344900 Sobic003G012200--Sobic003G344900 Sobic010G000900 Sobic010G000900 Sobic003G012200--Sobic010G000900 Sobic003G012200--Sobic001G085100 Sobic003G012200--Sobic004G348300 Sobic003G012200--Sobic009G075800 Sobic003G012200--Sobic004G275700 Sobic009G259400 Sobic009G259400 Sobic003G012200--Sobic009G259400 Sobic001G047400 Sobic001G047400 Sobic003G012200--Sobic001G047400
Octagon: transcription factors


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