Gene annotation
Transcriptome id Sobic.010G164000.3,Sobic.010G164000.1,Sobic.010G164000.2
Synonym Sb10g021760
Functional annotation FYVE zinc finger domain containing protein, expressed
UniProt C5Z4I2 , A0A1W0VTG6 , A0A1W0VTG3
Pfam PF01363 PF04366 PF04366 PF01363 PF01363
Panther DB PTHR15629 PTHR15629:SF9
NCBI CDD KOG1843; Uncharacterized conserved protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G29800 : RING/FYVE/PHD-type zinc finger family protein
RAP-DB (Rice) LOC_Os06g35910.1 : FYVE zinc finger domain containing protein, expressed
MaizeGDB (Corn) Zm00025a051080 , Zm00025a020049 , Zm00025a034505
Brachypodium KQK18036 , KQJ94166
Barley HORVU7Hr1G088960.2 , HORVU7Hr1G088960.3 , HORVU7Hr1G088960.1 , HORVU7Hr1G088960.6 , HORVU7Hr1G088960.4 , HORVU7Hr1G088960.5
Wheat TraesCS7B02G272800 , TraesCS7B02G272800 , TraesCS7D02G367900 , TraesCS7A02G354900
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.010G164000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G262900 farnesyltransferase/geranylgeranyltransferase type-1 subunitalpha, putative, expressed K05955: protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha
2 Sobic.001G085100 expressed protein -
3 Sobic.010G000900 spotted leaf 11, putative, expressed -
4 Sobic.004G275700 adaptor complexes medium subunit family domain containing protein, expressed K11826: AP-2 complex subunit mu-1
5 Sobic.004G066200 ubiquitin fusion degradation protein, putative, expressed K14016: ubiquitin fusion degradation protein 1
6 Sobic.001G121200 zinc finger, C3HC4 type domain containing protein, expressed -
7 Sobic.001G091300 HTH DNA-binding protein, putative, expressed -
8 Sobic.009G228700 expressed protein -
9 Sobic.010G261600 ubiquitin interaction motif family protein, expressed -
10 Sobic.001G261436 - -
11 Sobic.001G047400 SNF7 domain containing protein, putative, expressed K12194: CHMP4, SNF7, charged multivesicular body protein 4
12 Sobic.010G229400 polyprenyl synthetase, putative, expressed K14066: geranyl diphosphate synthase
13 Sobic.001G124200 ethylene receptor, putative, expressed K14509: ETR, ethylene receptor
14 Sobic.003G155900 mov34/MPN/PAD-1 family protein, expressed K11866: STAMBP, STAM-binding protein
15 Sobic.003G012200 tRNA synthetases class II domain containing protein, expressed K01876: aspartyl-tRNA synthetase
16 Sobic.003G053800 WD40-like domain containing protein, putative, expressed -
17 Sobic.010G205800 palmitoyltransferase TIP1, putative, expressed K18932: palmitoyltransferase
18 Sobic.009G113000 chaperone protein dnaJ 49, putative, expressed K09518: DnaJ homolog subfamily B member 12
19 Sobic.009G222500 expressed protein -
20 Sobic.009G207000 protein of unknown function DUF502 domain containing protein, expressed -


Gene co-expression network
sample Sobic010G164000 Sobic010G164000 Sobic002G262900 Sobic002G262900 Sobic010G164000--Sobic002G262900 Sobic001G085100 Sobic001G085100 Sobic010G164000--Sobic001G085100 Sobic010G000900 Sobic010G000900 Sobic010G164000--Sobic010G000900 Sobic004G275700 Sobic004G275700 Sobic010G164000--Sobic004G275700 Sobic004G066200 Sobic004G066200 Sobic010G164000--Sobic004G066200 Sobic001G121200 Sobic001G121200 Sobic010G164000--Sobic001G121200 Sobic001G091300 Sobic001G091300 Sobic010G164000--Sobic001G091300 Sobic009G228700 Sobic009G228700 Sobic010G164000--Sobic009G228700 Sobic010G261600 Sobic010G261600 Sobic010G164000--Sobic010G261600 Sobic002G008800 Sobic002G008800 Sobic002G262900--Sobic002G008800 Sobic002G262900--Sobic004G275700 Sobic002G262900--Sobic010G164000 Sobic006G136400 Sobic006G136400 Sobic002G262900--Sobic006G136400 Sobic004G039600 Sobic004G039600 Sobic002G262900--Sobic004G039600 Sobic010G205800 Sobic010G205800 Sobic002G262900--Sobic010G205800 Sobic002G262900--Sobic010G261600 Sobic003G155900 Sobic003G155900 Sobic002G262900--Sobic003G155900 Sobic001G124200 Sobic001G124200 Sobic002G262900--Sobic001G124200 Sobic006G101700 Sobic006G101700 Sobic001G085100--Sobic006G101700 Sobic001G261436 Sobic001G261436 Sobic001G085100--Sobic001G261436 Sobic006G148200 Sobic006G148200 Sobic001G085100--Sobic006G148200 Sobic007G167900 Sobic007G167900 Sobic001G085100--Sobic007G167900 Sobic001G206900 Sobic001G206900 Sobic001G085100--Sobic001G206900 Sobic001G047400 Sobic001G047400 Sobic001G085100--Sobic001G047400 Sobic001G085100--Sobic004G066200 Sobic001G085100--Sobic001G091300 Sobic003G012200 Sobic003G012200 Sobic001G085100--Sobic003G012200 Sobic002G400000 Sobic002G400000 Sobic010G000900--Sobic002G400000 Sobic010G000900--Sobic003G012200 Sobic010G000900--Sobic001G047400 Sobic003G261400 Sobic003G261400 Sobic010G000900--Sobic003G261400 Sobic004G130900 Sobic004G130900 Sobic010G000900--Sobic004G130900 Sobic001G051200 Sobic001G051200 Sobic010G000900--Sobic001G051200 Sobic001G323000 Sobic001G323000 Sobic010G000900--Sobic001G323000 Sobic001G388200 Sobic001G388200 Sobic010G000900--Sobic001G388200 Sobic010G000900--Sobic001G085100 Sobic001G199100 Sobic001G199100 Sobic004G275700--Sobic001G199100 Sobic004G275700--Sobic001G091300 Sobic009G075800 Sobic009G075800 Sobic004G275700--Sobic009G075800 Sobic004G275700--Sobic002G262900 Sobic001G007000 Sobic001G007000 Sobic004G275700--Sobic001G007000 Sobic010G020400 Sobic010G020400 Sobic004G275700--Sobic010G020400 Sobic004G275700--Sobic002G008800 Sobic003G365300 Sobic003G365300 Sobic004G275700--Sobic003G365300 Sobic004G275700--Sobic003G012200 Sobic001G356600 Sobic001G356600 Sobic004G066200--Sobic001G356600 Sobic004G066200--Sobic009G228700 Sobic004G066200--Sobic006G101700 Sobic001G080700 Sobic001G080700 Sobic004G066200--Sobic001G080700 Sobic001G392300 Sobic001G392300 Sobic004G066200--Sobic001G392300 Sobic003G352200 Sobic003G352200 Sobic004G066200--Sobic003G352200 Sobic003G248200 Sobic003G248200 Sobic004G066200--Sobic003G248200 Sobic004G353200 Sobic004G353200 Sobic004G066200--Sobic004G353200 Sobic004G066200--Sobic001G091300 Sobic001G390800 Sobic001G390800 Sobic001G121200--Sobic001G390800 Sobic001G121200--Sobic010G205800 Sobic001G268200 Sobic001G268200 Sobic001G121200--Sobic001G268200 Sobic009G113000 Sobic009G113000 Sobic001G121200--Sobic009G113000 Sobic002G111000 Sobic002G111000 Sobic001G121200--Sobic002G111000 Sobic010G147100 Sobic010G147100 Sobic001G121200--Sobic010G147100 Sobic001G207000 Sobic001G207000 Sobic001G121200--Sobic001G207000 Sobic001G146800 Sobic001G146800 Sobic001G121200--Sobic001G146800 Sobic009G056200 Sobic009G056200 Sobic001G121200--Sobic009G056200 Sobic001G091300--Sobic009G228700 Sobic003G312200 Sobic003G312200 Sobic001G091300--Sobic003G312200 Sobic001G091300--Sobic004G275700 Sobic001G091300--Sobic004G066200 Sobic001G091300--Sobic001G085100 Sobic001G512300 Sobic001G512300 Sobic001G091300--Sobic001G512300 Sobic001G091300--Sobic001G261436 Sobic001G091300--Sobic001G199100 Sobic002G303600 Sobic002G303600 Sobic001G091300--Sobic002G303600 Sobic009G228700--Sobic004G066200 Sobic009G207000 Sobic009G207000 Sobic009G228700--Sobic009G207000 Sobic009G228700--Sobic001G091300 Sobic009G228700--Sobic001G323000 Sobic009G228700--Sobic001G356600 Sobic006G249700 Sobic006G249700 Sobic009G228700--Sobic006G249700 Sobic009G228700--Sobic006G148200 Sobic009G228700--Sobic003G312200 Sobic009G228700--Sobic001G124200 Sobic003G338500 Sobic003G338500 Sobic010G261600--Sobic003G338500 Sobic010G261600--Sobic002G303600 Sobic010G261600--Sobic002G008800 Sobic004G228800 Sobic004G228800 Sobic010G261600--Sobic004G228800 Sobic004G323700 Sobic004G323700 Sobic010G261600--Sobic004G323700 Sobic010G261600--Sobic002G262900 Sobic010G261600--Sobic009G228700 Sobic010G261600--Sobic004G275700 Sobic010G261600--Sobic010G020400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.