Gene annotation
Transcriptome id Sobic.010G229400.2,Sobic.010G229400.1
Synonym GPS1, GPPS, Sb10g027240
Functional annotation polyprenyl synthetase, putative, expressed
UniProt C5Z7U7 , A0A194YKZ7
Pfam PF00348
Panther DB PTHR12001 PTHR12001:SF47
NCBI CDD KOG0776; Geranylgeranyl pyrophosphate synthase/Polyprenyl synthetase
KEGG Orthology K14066; geranyl diphosphate synthase
Gene Ontology GO:0008299; isoprenoid biosynthetic process


Orthologs (automatic annotation)
TAIR AT2G34630 : geranyl diphosphate synthase 1
RAP-DB (Rice) LOC_Os06g46450.1 : polyprenyl synthetase, putative, expressed
MaizeGDB (Corn) Zm00025a018027 , Zm00025a018036
Brachypodium KQK17109 , KQK12664 , KQK17110
Barley HORVU7Hr1G106230.13 , HORVU7Hr1G106230.12 , HORVU7Hr1G106230.11 , HORVU7Hr1G106230.10 , HORVU7Hr1G106230.9 , HORVU7Hr1G106230.8 , HORVU7Hr1G106230.6 , HORVU7Hr1G106230.4 , HORVU7Hr1G106230.3 , HORVU7Hr1G106230.1 , HORVU7Hr1G106230.7 , HORVU7Hr1G106230.5 , HORVU7Hr1G106230.2
Wheat TraesCS7A02G461500 , TraesCS7B02G362900 , TraesCS7D02G449700 , TraesCS7D02G449700
Populus -


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cDNA sequences
Sobic.010G229400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G139800 protein kinase, putative, expressed K13436: pto-interacting protein 1
2 Sobic.006G215700 OsFBX172 - F-box domain containing protein, expressed -
3 Sobic.009G222500 expressed protein -
4 Sobic.008G093000 ABC transporter, ATP-binding protein, putative, expressed K06185: ATP-binding cassette, subfamily F, member 2
5 Sobic.010G164000 FYVE zinc finger domain containing protein, expressed -
6 Sobic.002G385900 DCN1, putative, expressed K17822: DCN1-like protein 1/2
7 Sobic.010G000900 spotted leaf 11, putative, expressed -
8 Sobic.002G166900 ubiquitin-conjugating enzyme, putative, expressed K10580: UBE2N, BLU, ubiquitin-conjugating enzyme E2 N
9 Sobic.001G199100 peptidase, M24 family protein, putative, expressed K01265: methionyl aminopeptidase
10 Sobic.009G123600 tungus CG8253-PA, putative, expressed -
11 Sobic.009G228700 expressed protein -
12 Sobic.004G167400 expressed protein -
13 Sobic.009G207000 protein of unknown function DUF502 domain containing protein, expressed -
14 Sobic.003G099100 ZOS9-05 - C2H2 zinc finger protein, expressed -
15 Sobic.002G226900 zinc-binding alcohol dehydrogenase domain-containing protein 2, putative, expressed K07119: PTGR3, prostaglandin reductase 3
16 Sobic.009G225000 transmembrane protein 93, putative, expressed -
17 Sobic.006G092400 calmodulin binding protein, putative, expressed -
18 Sobic.002G375300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@FYVE zinc finger domain containing protein, expressed -
19 Sobic.003G012200 tRNA synthetases class II domain containing protein, expressed K01876: aspartyl-tRNA synthetase
20 Sobic.004G066200 ubiquitin fusion degradation protein, putative, expressed K14016: ubiquitin fusion degradation protein 1


Gene co-expression network
sample Sobic010G229400 Sobic010G229400 Sobic003G139800 Sobic003G139800 Sobic010G229400--Sobic003G139800 Sobic006G215700 Sobic006G215700 Sobic010G229400--Sobic006G215700 Sobic009G222500 Sobic009G222500 Sobic010G229400--Sobic009G222500 Sobic008G093000 Sobic008G093000 Sobic010G229400--Sobic008G093000 Sobic010G164000 Sobic010G164000 Sobic010G229400--Sobic010G164000 Sobic002G385900 Sobic002G385900 Sobic010G229400--Sobic002G385900 Sobic010G000900 Sobic010G000900 Sobic010G229400--Sobic010G000900 Sobic002G166900 Sobic002G166900 Sobic010G229400--Sobic002G166900 Sobic001G199100 Sobic001G199100 Sobic010G229400--Sobic001G199100 Sobic001G390800 Sobic001G390800 Sobic003G139800--Sobic001G390800 Sobic003G139800--Sobic010G229400 Sobic001G268200 Sobic001G268200 Sobic003G139800--Sobic001G268200 Sobic010G147100 Sobic010G147100 Sobic003G139800--Sobic010G147100 Sobic002G311100 Sobic002G311100 Sobic003G139800--Sobic002G311100 Sobic001G113500 Sobic001G113500 Sobic003G139800--Sobic001G113500 Sobic010G139600 Sobic010G139600 Sobic003G139800--Sobic010G139600 Sobic002G111000 Sobic002G111000 Sobic003G139800--Sobic002G111000 Sobic010G131900 Sobic010G131900 Sobic003G139800--Sobic010G131900 Sobic006G215700--Sobic010G229400 Sobic006G215700--Sobic003G139800 Sobic001G107600 Sobic001G107600 Sobic006G215700--Sobic001G107600 Sobic001G301700 Sobic001G301700 Sobic006G215700--Sobic001G301700 Sobic010G278200 Sobic010G278200 Sobic006G215700--Sobic010G278200 Sobic006G104600 Sobic006G104600 Sobic006G215700--Sobic006G104600 Sobic003G365300 Sobic003G365300 Sobic006G215700--Sobic003G365300 Sobic004G177300 Sobic004G177300 Sobic006G215700--Sobic004G177300 Sobic006G215700--Sobic010G164000 Sobic009G075800 Sobic009G075800 Sobic009G222500--Sobic009G075800 Sobic006G049700 Sobic006G049700 Sobic009G222500--Sobic006G049700 Sobic001G080700 Sobic001G080700 Sobic009G222500--Sobic001G080700 Sobic006G101700 Sobic006G101700 Sobic009G222500--Sobic006G101700 Sobic004G066200 Sobic004G066200 Sobic009G222500--Sobic004G066200 Sobic007G166400 Sobic007G166400 Sobic009G222500--Sobic007G166400 Sobic010G027600 Sobic010G027600 Sobic009G222500--Sobic010G027600 Sobic003G264200 Sobic003G264200 Sobic009G222500--Sobic003G264200 Sobic004G235000 Sobic004G235000 Sobic009G222500--Sobic004G235000 Sobic008G093000--Sobic001G199100 Sobic010G064600 Sobic010G064600 Sobic008G093000--Sobic010G064600 Sobic008G093000--Sobic001G301700 Sobic003G312200 Sobic003G312200 Sobic008G093000--Sobic003G312200 Sobic004G275700 Sobic004G275700 Sobic008G093000--Sobic004G275700 Sobic008G093000--Sobic010G229400 Sobic009G207000 Sobic009G207000 Sobic008G093000--Sobic009G207000 Sobic003G087000 Sobic003G087000 Sobic008G093000--Sobic003G087000 Sobic002G244100 Sobic002G244100 Sobic008G093000--Sobic002G244100 Sobic002G262900 Sobic002G262900 Sobic010G164000--Sobic002G262900 Sobic001G085100 Sobic001G085100 Sobic010G164000--Sobic001G085100 Sobic010G164000--Sobic010G000900 Sobic010G164000--Sobic004G275700 Sobic010G164000--Sobic004G066200 Sobic001G121200 Sobic001G121200 Sobic010G164000--Sobic001G121200 Sobic001G091300 Sobic001G091300 Sobic010G164000--Sobic001G091300 Sobic009G228700 Sobic009G228700 Sobic010G164000--Sobic009G228700 Sobic010G261600 Sobic010G261600 Sobic010G164000--Sobic010G261600 Sobic009G135600 Sobic009G135600 Sobic002G385900--Sobic009G135600 Sobic001G057800 Sobic001G057800 Sobic002G385900--Sobic001G057800 Sobic001G461900 Sobic001G461900 Sobic002G385900--Sobic001G461900 Sobic003G099100 Sobic003G099100 Sobic002G385900--Sobic003G099100 Sobic002G385900--Sobic002G166900 Sobic010G042100 Sobic010G042100 Sobic002G385900--Sobic010G042100 Sobic001G323000 Sobic001G323000 Sobic002G385900--Sobic001G323000 Sobic002G385900--Sobic009G207000 Sobic006G281800 Sobic006G281800 Sobic002G385900--Sobic006G281800 Sobic002G400000 Sobic002G400000 Sobic010G000900--Sobic002G400000 Sobic003G012200 Sobic003G012200 Sobic010G000900--Sobic003G012200 Sobic001G047400 Sobic001G047400 Sobic010G000900--Sobic001G047400 Sobic003G261400 Sobic003G261400 Sobic010G000900--Sobic003G261400 Sobic004G130900 Sobic004G130900 Sobic010G000900--Sobic004G130900 Sobic001G051200 Sobic001G051200 Sobic010G000900--Sobic001G051200 Sobic010G000900--Sobic001G323000 Sobic001G388200 Sobic001G388200 Sobic010G000900--Sobic001G388200 Sobic010G000900--Sobic001G085100 Sobic006G090000 Sobic006G090000 Sobic002G166900--Sobic006G090000 Sobic004G067100 Sobic004G067100 Sobic002G166900--Sobic004G067100 Sobic001G283200 Sobic001G283200 Sobic002G166900--Sobic001G283200 Sobic002G166900--Sobic002G385900 Sobic010G188100 Sobic010G188100 Sobic002G166900--Sobic010G188100 Sobic004G167400 Sobic004G167400 Sobic002G166900--Sobic004G167400 Sobic004G321900 Sobic004G321900 Sobic002G166900--Sobic004G321900 Sobic004G212200 Sobic004G212200 Sobic002G166900--Sobic004G212200 Sobic001G220400 Sobic001G220400 Sobic002G166900--Sobic001G220400 Sobic001G199100--Sobic003G012200 Sobic001G199100--Sobic004G275700 Sobic001G199100--Sobic009G075800 Sobic001G199100--Sobic009G207000 Sobic001G199100--Sobic008G093000 Sobic001G199100--Sobic001G091300 Sobic002G226900 Sobic002G226900 Sobic001G199100--Sobic002G226900 Sobic004G206700 Sobic004G206700 Sobic001G199100--Sobic004G206700 Sobic004G348300 Sobic004G348300 Sobic001G199100--Sobic004G348300
Octagon: transcription factors


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