Gene annotation
Transcriptome id Sobic.009G225000.1
Synonym Sb09g027840
Functional annotation transmembrane protein 93, putative, expressed
UniProt C5YVC9
Pfam PF07019
Panther DB PTHR20994 PTHR20994:SF0
NCBI CDD KOG4455; Uncharacterized conserved protein
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane GO:0005783endoplasmic reticulum


Orthologs (automatic annotation)
TAIR AT5G49540 : Rab5-interacting family protein
RAP-DB (Rice) LOC_Os01g49026.1 : transmembrane protein 93, putative, expressed
MaizeGDB (Corn) Zm00025a044488 , Zm00025a036548
Brachypodium KQK09217 , KQK09216 , KQK04995 , KQK04996
Barley -
Wheat TraesCS1D02G389000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G281800 ras-related protein, putative, expressed K07910: Ras-related protein Rab-18
2 Sobic.001G283200 proteasome subunit, putative, expressed K03039: PSMD13, 26S proteasome regulatory subunit N9
3 Sobic.004G194900 expressed protein -
4 Sobic.004G181900 expressed protein -
5 Sobic.001G461900 vesicle transport protein GOT1B, putative, expressed -
6 Sobic.007G142500 EF hand family protein, putative, expressed K06268: PPP3R, serine/threonine-protein phosphatase 2B regulatory subunit
7 Sobic.001G460600 RING zinc finger protein-like, putative, expressed -
8 Sobic.004G206700 vesicle transport protein GOT1B, putative, expressed -
9 Sobic.003G349300 serine/threonine-protein kinase AFC1, putative, expressed K08287: dual-specificity kinase
10 Sobic.003G338500 endoplasmic reticulum-Golgi intermediate compartment protein 3, putative, expressed -
11 Sobic.003G087000 expressed protein -
12 Sobic.001G261436 - -
13 Sobic.009G135600 UBA/TS-N domain containing protein, expressed -
14 Sobic.010G064600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@LIM domain-containing protein, putative, expressed -
15 Sobic.002G385900 DCN1, putative, expressed K17822: DCN1-like protein 1/2
16 Sobic.007G045600 MSP domain containing protein, expressed -
17 Sobic.007G019100 mitochondrial ribosomal protein S10, putative, expressed K02946: RP-S10, MRPS10, small subunit ribosomal protein S10
18 Sobic.003G367451 - K08516: synaptobrevin homolog YKT6
19 Sobic.010G229400 polyprenyl synthetase, putative, expressed K14066: geranyl diphosphate synthase
20 Sobic.001G206900 vacuolar protein-sorting protein bro1, putative, expressed K12200: PDCD6IP, ALIX, programmed cell death 6-interacting protein


Gene co-expression network
sample Sobic009G225000 Sobic009G225000 Sobic006G281800 Sobic006G281800 Sobic009G225000--Sobic006G281800 Sobic001G283200 Sobic001G283200 Sobic009G225000--Sobic001G283200 Sobic004G194900 Sobic004G194900 Sobic009G225000--Sobic004G194900 Sobic004G181900 Sobic004G181900 Sobic009G225000--Sobic004G181900 Sobic001G461900 Sobic001G461900 Sobic009G225000--Sobic001G461900 Sobic007G142500 Sobic007G142500 Sobic009G225000--Sobic007G142500 Sobic001G460600 Sobic001G460600 Sobic009G225000--Sobic001G460600 Sobic004G206700 Sobic004G206700 Sobic009G225000--Sobic004G206700 Sobic003G349300 Sobic003G349300 Sobic009G225000--Sobic003G349300 Sobic006G281800--Sobic009G225000 Sobic006G281800--Sobic003G349300 Sobic006G281800--Sobic001G283200 Sobic006G281800--Sobic004G181900 Sobic001G206900 Sobic001G206900 Sobic006G281800--Sobic001G206900 Sobic002G385900 Sobic002G385900 Sobic006G281800--Sobic002G385900 Sobic006G281800--Sobic004G206700 Sobic010G064600 Sobic010G064600 Sobic006G281800--Sobic010G064600 Sobic003G312200 Sobic003G312200 Sobic006G281800--Sobic003G312200 Sobic001G458700 Sobic001G458700 Sobic001G283200--Sobic001G458700 Sobic003G261400 Sobic003G261400 Sobic001G283200--Sobic003G261400 Sobic006G252200 Sobic006G252200 Sobic001G283200--Sobic006G252200 Sobic001G033500 Sobic001G033500 Sobic001G283200--Sobic001G033500 Sobic004G348900 Sobic004G348900 Sobic001G283200--Sobic004G348900 Sobic001G283200--Sobic004G181900 Sobic001G283200--Sobic003G349300 Sobic007G176200 Sobic007G176200 Sobic001G283200--Sobic007G176200 Sobic004G082900 Sobic004G082900 Sobic001G283200--Sobic004G082900 Sobic010G205300 Sobic010G205300 Sobic004G194900--Sobic010G205300 Sobic002G281300 Sobic002G281300 Sobic004G194900--Sobic002G281300 Sobic006G044600 Sobic006G044600 Sobic004G194900--Sobic006G044600 Sobic004G194900--Sobic003G349300 Sobic004G194900--Sobic009G225000 Sobic004G310500 Sobic004G310500 Sobic004G194900--Sobic004G310500 Sobic004G194900--Sobic001G458700 Sobic001G085100 Sobic001G085100 Sobic004G194900--Sobic001G085100 Sobic005G111900 Sobic005G111900 Sobic004G194900--Sobic005G111900 Sobic004G181900--Sobic001G206900 Sobic004G181900--Sobic003G349300 Sobic004G181900--Sobic001G283200 Sobic004G181900--Sobic010G205300 Sobic004G181900--Sobic006G281800 Sobic004G181900--Sobic009G225000 Sobic004G181900--Sobic004G348900 Sobic009G149500 Sobic009G149500 Sobic004G181900--Sobic009G149500 Sobic004G181900--Sobic001G085100 Sobic009G135600 Sobic009G135600 Sobic001G461900--Sobic009G135600 Sobic007G045600 Sobic007G045600 Sobic001G461900--Sobic007G045600 Sobic009G146100 Sobic009G146100 Sobic001G461900--Sobic009G146100 Sobic004G327300 Sobic004G327300 Sobic001G461900--Sobic004G327300 Sobic001G461900--Sobic007G142500 Sobic007G168600 Sobic007G168600 Sobic001G461900--Sobic007G168600 Sobic004G086600 Sobic004G086600 Sobic001G461900--Sobic004G086600 Sobic004G335000 Sobic004G335000 Sobic001G461900--Sobic004G335000 Sobic007G096700 Sobic007G096700 Sobic001G461900--Sobic007G096700 Sobic007G142500--Sobic007G045600 Sobic007G142500--Sobic001G458700 Sobic007G142500--Sobic001G461900 Sobic007G142500--Sobic003G261400 Sobic003G323600 Sobic003G323600 Sobic007G142500--Sobic003G323600 Sobic007G142500--Sobic007G176200 Sobic009G088100 Sobic009G088100 Sobic007G142500--Sobic009G088100 Sobic007G142500--Sobic004G335000 Sobic007G142500--Sobic002G281300 Sobic001G460600--Sobic009G225000 Sobic001G106700 Sobic001G106700 Sobic001G460600--Sobic001G106700 Sobic001G460600--Sobic009G135600 Sobic003G370900 Sobic003G370900 Sobic001G460600--Sobic003G370900 Sobic010G000900 Sobic010G000900 Sobic001G460600--Sobic010G000900 Sobic003G117900 Sobic003G117900 Sobic001G460600--Sobic003G117900 Sobic001G460600--Sobic001G461900 Sobic004G289800 Sobic004G289800 Sobic001G460600--Sobic004G289800 Sobic001G460600--Sobic003G323600 Sobic002G405400 Sobic002G405400 Sobic004G206700--Sobic002G405400 Sobic009G084000 Sobic009G084000 Sobic004G206700--Sobic009G084000 Sobic001G199100 Sobic001G199100 Sobic004G206700--Sobic001G199100 Sobic010G223300 Sobic010G223300 Sobic004G206700--Sobic010G223300 Sobic003G338500 Sobic003G338500 Sobic004G206700--Sobic003G338500 Sobic006G180000 Sobic006G180000 Sobic004G206700--Sobic006G180000 Sobic009G123600 Sobic009G123600 Sobic004G206700--Sobic009G123600 Sobic002G059300 Sobic002G059300 Sobic004G206700--Sobic002G059300 Sobic004G206700--Sobic004G194900 Sobic003G349300--Sobic010G205300 Sobic001G294900 Sobic001G294900 Sobic003G349300--Sobic001G294900 Sobic003G349300--Sobic009G135600 Sobic001G388200 Sobic001G388200 Sobic003G349300--Sobic001G388200 Sobic003G349300--Sobic004G181900 Sobic009G192000 Sobic009G192000 Sobic003G349300--Sobic009G192000 Sobic003G349300--Sobic001G283200 Sobic003G349300--Sobic003G261400 Sobic003G349300--Sobic007G168600
Octagon: transcription factors


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