Gene annotation
Transcriptome id Sobic.001G283200.2,Sobic.001G283200.1
Synonym Sb01g027860
Functional annotation proteasome subunit, putative, expressed
UniProt A0A1B6QLN2
Pfam PF01399
Panther DB PTHR10539
NCBI CDD KOG2908; 26S proteasome regulatory complex, subunit RPN9/PSMD13
KEGG Orthology K03039; PSMD13, 26S proteasome regulatory subunit N9
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT4G19006 : Proteasome component (PCI) domain protein
RAP-DB (Rice) LOC_Os01g32800.2 : proteasome subunit, putative, expressed
MaizeGDB (Corn) Zm00025a018085 , Zm00025a003550 , Zm00025a009968
Brachypodium KQJ97987 , KQJ97986 , KQJ84338
Barley HORVU1Hr1G051120.2 , HORVU2Hr1G102810.4 , HORVU2Hr1G102810.2 , HORVU2Hr1G102810.3 , HORVU2Hr1G102810.1 , HORVU2Hr1G034690.4 , HORVU2Hr1G034690.2 , HORVU2Hr1G034690.3 , HORVU2Hr1G034690.1 , HORVU1Hr1G051120.1
Wheat TraesCS1D02G199700 , TraesCS1A02G196300 , TraesCS1B02G210900
Populus -


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cDNA sequences
Sobic.001G283200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G458700 26S protease regulatory subunit 6B, putative, expressed K03063: PSMC4, 26S proteasome regulatory subunit T3
2 Sobic.003G261400 DUF292 domain containing protein, expressed -
3 Sobic.006G252200 MEE34, putative, expressed K03038: PSMD7, 26S proteasome regulatory subunit N8
4 Sobic.001G033500 dolichyl-phosphate beta-glycosyltransferase, putative, expressed K00729: dolichyl-phosphate beta-glucosyltransferase
5 Sobic.004G348900 expressed protein -
6 Sobic.004G181900 expressed protein -
7 Sobic.003G349300 serine/threonine-protein kinase AFC1, putative, expressed K08287: dual-specificity kinase
8 Sobic.007G176200 26S proteasome non-ATPase regulatory subunit 3, putative, expressed K03033: PSMD3, 26S proteasome regulatory subunit N3
9 Sobic.004G082900 26S protease regulatory subunit, putative, expressed K03064: PSMC6, 26S proteasome regulatory subunit T4
10 Sobic.009G257600 - K12812: DDX39B, UAP56, ATP-dependent RNA helicase UAP56/SUB2
11 Sobic.006G281800 ras-related protein, putative, expressed K07910: Ras-related protein Rab-18
12 Sobic.009G225000 transmembrane protein 93, putative, expressed -
13 Sobic.003G261500 lipase, putative, expressed -
14 Sobic.001G206900 vacuolar protein-sorting protein bro1, putative, expressed K12200: PDCD6IP, ALIX, programmed cell death 6-interacting protein
15 Sobic.004G130900 seven in absentia protein family domain containing protein, expressed K04506: E3 ubiquitin-protein ligase SIAH1
16 Sobic.004G010900 OsFBK2 - F-box domain and kelch repeat containing protein, expressed -
17 Sobic.010G000900 spotted leaf 11, putative, expressed -
18 Sobic.002G166900 ubiquitin-conjugating enzyme, putative, expressed K10580: UBE2N, BLU, ubiquitin-conjugating enzyme E2 N
19 Sobic.007G136100 uncharacterized protein family UPF0016 domain containing protein, expressed -
20 Sobic.007G142500 EF hand family protein, putative, expressed K06268: PPP3R, serine/threonine-protein phosphatase 2B regulatory subunit


Gene co-expression network
sample Sobic001G283200 Sobic001G283200 Sobic001G458700 Sobic001G458700 Sobic001G283200--Sobic001G458700 Sobic003G261400 Sobic003G261400 Sobic001G283200--Sobic003G261400 Sobic006G252200 Sobic006G252200 Sobic001G283200--Sobic006G252200 Sobic001G033500 Sobic001G033500 Sobic001G283200--Sobic001G033500 Sobic004G348900 Sobic004G348900 Sobic001G283200--Sobic004G348900 Sobic004G181900 Sobic004G181900 Sobic001G283200--Sobic004G181900 Sobic003G349300 Sobic003G349300 Sobic001G283200--Sobic003G349300 Sobic007G176200 Sobic007G176200 Sobic001G283200--Sobic007G176200 Sobic004G082900 Sobic004G082900 Sobic001G283200--Sobic004G082900 Sobic001G458700--Sobic007G176200 Sobic001G458700--Sobic006G252200 Sobic001G010700 Sobic001G010700 Sobic001G458700--Sobic001G010700 Sobic002G341800 Sobic002G341800 Sobic001G458700--Sobic002G341800 Sobic004G224900 Sobic004G224900 Sobic001G458700--Sobic004G224900 Sobic003G330500 Sobic003G330500 Sobic001G458700--Sobic003G330500 Sobic001G458700--Sobic001G283200 Sobic001G502200 Sobic001G502200 Sobic001G458700--Sobic001G502200 Sobic004G081800 Sobic004G081800 Sobic001G458700--Sobic004G081800 Sobic003G261400--Sobic001G283200 Sobic002G281300 Sobic002G281300 Sobic003G261400--Sobic002G281300 Sobic003G261500 Sobic003G261500 Sobic003G261400--Sobic003G261500 Sobic007G045600 Sobic007G045600 Sobic003G261400--Sobic007G045600 Sobic003G261400--Sobic001G458700 Sobic004G130900 Sobic004G130900 Sobic003G261400--Sobic004G130900 Sobic003G124800 Sobic003G124800 Sobic003G261400--Sobic003G124800 Sobic001G051200 Sobic001G051200 Sobic003G261400--Sobic001G051200 Sobic010G000900 Sobic010G000900 Sobic003G261400--Sobic010G000900 Sobic006G252200--Sobic007G176200 Sobic006G252200--Sobic001G458700 Sobic006G252200--Sobic004G224900 Sobic006G252200--Sobic001G010700 Sobic006G252200--Sobic003G330500 Sobic002G428200 Sobic002G428200 Sobic006G252200--Sobic002G428200 Sobic004G138800 Sobic004G138800 Sobic006G252200--Sobic004G138800 Sobic006G252200--Sobic001G283200 Sobic001G096100 Sobic001G096100 Sobic006G252200--Sobic001G096100 Sobic001G033500--Sobic001G283200 Sobic007G184500 Sobic007G184500 Sobic001G033500--Sobic007G184500 Sobic006G148200 Sobic006G148200 Sobic001G033500--Sobic006G148200 Sobic007G118000 Sobic007G118000 Sobic001G033500--Sobic007G118000 Sobic001G085100 Sobic001G085100 Sobic001G033500--Sobic001G085100 Sobic010G073100 Sobic010G073100 Sobic001G033500--Sobic010G073100 Sobic001G033500--Sobic001G458700 Sobic002G113800 Sobic002G113800 Sobic001G033500--Sobic002G113800 Sobic003G012200 Sobic003G012200 Sobic001G033500--Sobic003G012200 Sobic004G348900--Sobic001G283200 Sobic003G077900 Sobic003G077900 Sobic004G348900--Sobic003G077900 Sobic004G348900--Sobic004G181900 Sobic001G404100 Sobic001G404100 Sobic004G348900--Sobic001G404100 Sobic001G206900 Sobic001G206900 Sobic004G348900--Sobic001G206900 Sobic004G348900--Sobic001G085100 Sobic002G400000 Sobic002G400000 Sobic004G348900--Sobic002G400000 Sobic001G444300 Sobic001G444300 Sobic004G348900--Sobic001G444300 Sobic001G323000 Sobic001G323000 Sobic004G348900--Sobic001G323000 Sobic004G181900--Sobic001G206900 Sobic004G181900--Sobic003G349300 Sobic004G181900--Sobic001G283200 Sobic010G205300 Sobic010G205300 Sobic004G181900--Sobic010G205300 Sobic006G281800 Sobic006G281800 Sobic004G181900--Sobic006G281800 Sobic009G225000 Sobic009G225000 Sobic004G181900--Sobic009G225000 Sobic004G181900--Sobic004G348900 Sobic009G149500 Sobic009G149500 Sobic004G181900--Sobic009G149500 Sobic004G181900--Sobic001G085100 Sobic003G349300--Sobic010G205300 Sobic001G294900 Sobic001G294900 Sobic003G349300--Sobic001G294900 Sobic009G135600 Sobic009G135600 Sobic003G349300--Sobic009G135600 Sobic001G388200 Sobic001G388200 Sobic003G349300--Sobic001G388200 Sobic003G349300--Sobic004G181900 Sobic009G192000 Sobic009G192000 Sobic003G349300--Sobic009G192000 Sobic003G349300--Sobic001G283200 Sobic003G349300--Sobic003G261400 Sobic007G168600 Sobic007G168600 Sobic003G349300--Sobic007G168600 Sobic007G176200--Sobic001G458700 Sobic007G176200--Sobic001G010700 Sobic007G176200--Sobic006G252200 Sobic007G176200--Sobic003G330500 Sobic007G176200--Sobic004G224900 Sobic007G176200--Sobic002G428200 Sobic004G335000 Sobic004G335000 Sobic007G176200--Sobic004G335000 Sobic007G176200--Sobic002G341800 Sobic009G067000 Sobic009G067000 Sobic007G176200--Sobic009G067000 Sobic004G082900--Sobic006G252200 Sobic004G082900--Sobic001G283200 Sobic004G082900--Sobic001G458700 Sobic004G010900 Sobic004G010900 Sobic004G082900--Sobic004G010900 Sobic004G082900--Sobic007G176200 Sobic005G105500 Sobic005G105500 Sobic004G082900--Sobic005G105500 Sobic001G145500 Sobic001G145500 Sobic004G082900--Sobic001G145500 Sobic004G082900--Sobic009G149500 Sobic004G082900--Sobic001G444300
Octagon: transcription factors


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