Gene annotation
Transcriptome id Sobic.004G130900.1
Synonym Sb04g011560
Functional annotation seven in absentia protein family domain containing protein, expressed
UniProt C5Y0I4
Pfam PF03145
Panther DB PTHR10315 PTHR10315:SF34
NCBI CDD KOG3002; Zn finger protein
KEGG Orthology K04506; E3 ubiquitin-protein ligase SIAH1
Gene Ontology GO:0007275; multicellular organism development GO:0006511ubiquitin-dependent protein catabolic process GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT4G27880 : Protein with RING/U-box and TRAF-like domains
RAP-DB (Rice) LOC_Os02g19140.1 : seven in absentia protein family domain containing protein, expressed
MaizeGDB (Corn) Zm00025a043224 , Zm00025a037556 , Zm00025a034326 , Zm00025a019742
Brachypodium KQK06945 , KQJ94460 , KQK03465
Barley HORVU7Hr1G082100.2 , HORVU3Hr1G032110.2 , HORVU7Hr1G082100.1 , HORVU3Hr1G032110.3 , HORVU3Hr1G032110.7 , HORVU3Hr1G032110.4 , HORVU3Hr1G032110.9
Wheat TraesCS7A02G332700 , TraesCS7B02G244800 , TraesCS3B02G185000 , TraesCS3A02G158000 , TraesCS3D02G165600 , TraesCS7D02G340900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G400000 MBTB14 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
2 Sobic.004G327300 TMS membrane protein/tumour differentially expressed protein, putative, expressed -
3 Sobic.003G261400 DUF292 domain containing protein, expressed -
4 Sobic.003G367451 - K08516: synaptobrevin homolog YKT6
5 Sobic.001G005900 PPR repeat domain containing protein, putative, expressed -
6 Sobic.007G096700 POEI30 - Pollen Ole e I allergen and extensin family protein precursor, expressed -
7 Sobic.009G198500 ras-related protein, putative, expressed K07897: Ras-related protein Rab-7A
8 Sobic.010G000900 spotted leaf 11, putative, expressed -
9 Sobic.007G168600 vesicle-associated membrane protein 727, putative, expressed K08511: vesicle-associated membrane protein 72
10 Sobic.003G077900 vacuolar protein sorting-associating protein 4B, putative, expressed K12196: vacuolar protein-sorting-associated protein 4
11 Sobic.001G236300 cell division control protein 48 homolog E, putative, expressed K13525: VCP, transitional endoplasmic reticulum ATPase
12 Sobic.003G220600 SNF7 domain containing protein, putative, expressed K12194: CHMP4, SNF7, charged multivesicular body protein 4
13 Sobic.001G057800 transmembrane BAX inhibitor motif-containing protein, putative, expressed K06890: uncharacterized protein
14 Sobic.001G283200 proteasome subunit, putative, expressed K03039: PSMD13, 26S proteasome regulatory subunit N9
15 Sobic.007G045600 MSP domain containing protein, expressed -
16 Sobic.009G146100 RNA recognition motif containing protein, putative, expressed K12831: SF3B4, splicing factor 3B subunit 4
17 Sobic.001G403700 mitochondrial carrier protein, putative, expressed K15113: SLC25A28_37, solute carrier family 25 (mitochondrial iron transporter), member 28/37
18 Sobic.004G086600 26S protease regulatory subunit, putative, expressed K03066: PSMC5, 26S proteasome regulatory subunit T6
19 Sobic.003G124800 26S proteasome non-ATPase regulatory subunit 14, putative, expressed K03030: PSMD14, RPN11, 26S proteasome regulatory subunit N11
20 Sobic.006G232200 SNARE domain containing protein, putative, expressed K08501: syntaxin 8
K08503: syntaxin of plants SYP5


Gene co-expression network
sample Sobic004G130900 Sobic004G130900 Sobic002G400000 Sobic002G400000 Sobic004G130900--Sobic002G400000 Sobic004G327300 Sobic004G327300 Sobic004G130900--Sobic004G327300 Sobic003G261400 Sobic003G261400 Sobic004G130900--Sobic003G261400 Sobic003G367451 Sobic003G367451 Sobic004G130900--Sobic003G367451 Sobic001G005900 Sobic001G005900 Sobic004G130900--Sobic001G005900 Sobic007G096700 Sobic007G096700 Sobic004G130900--Sobic007G096700 Sobic009G198500 Sobic009G198500 Sobic004G130900--Sobic009G198500 Sobic010G000900 Sobic010G000900 Sobic004G130900--Sobic010G000900 Sobic007G168600 Sobic007G168600 Sobic004G130900--Sobic007G168600 Sobic002G400000--Sobic007G168600 Sobic003G077900 Sobic003G077900 Sobic002G400000--Sobic003G077900 Sobic002G400000--Sobic009G198500 Sobic002G400000--Sobic004G130900 Sobic001G433400 Sobic001G433400 Sobic002G400000--Sobic001G433400 Sobic001G395400 Sobic001G395400 Sobic002G400000--Sobic001G395400 Sobic002G400000--Sobic004G327300 Sobic009G004600 Sobic009G004600 Sobic002G400000--Sobic009G004600 Sobic002G400000--Sobic010G000900 Sobic004G327300--Sobic003G367451 Sobic004G327300--Sobic001G005900 Sobic004G327300--Sobic007G096700 Sobic004G327300--Sobic002G400000 Sobic004G327300--Sobic004G130900 Sobic001G461900 Sobic001G461900 Sobic004G327300--Sobic001G461900 Sobic009G174900 Sobic009G174900 Sobic004G327300--Sobic009G174900 Sobic004G327300--Sobic009G198500 Sobic007G114200 Sobic007G114200 Sobic004G327300--Sobic007G114200 Sobic001G283200 Sobic001G283200 Sobic003G261400--Sobic001G283200 Sobic002G281300 Sobic002G281300 Sobic003G261400--Sobic002G281300 Sobic003G261500 Sobic003G261500 Sobic003G261400--Sobic003G261500 Sobic007G045600 Sobic007G045600 Sobic003G261400--Sobic007G045600 Sobic001G458700 Sobic001G458700 Sobic003G261400--Sobic001G458700 Sobic003G261400--Sobic004G130900 Sobic003G124800 Sobic003G124800 Sobic003G261400--Sobic003G124800 Sobic001G051200 Sobic001G051200 Sobic003G261400--Sobic001G051200 Sobic003G261400--Sobic010G000900 Sobic003G367451--Sobic004G327300 Sobic001G236300 Sobic001G236300 Sobic003G367451--Sobic001G236300 Sobic003G367451--Sobic007G114200 Sobic003G367451--Sobic001G433400 Sobic004G272800 Sobic004G272800 Sobic003G367451--Sobic004G272800 Sobic002G083266 Sobic002G083266 Sobic003G367451--Sobic002G083266 Sobic003G367451--Sobic004G130900 Sobic003G253000 Sobic003G253000 Sobic003G367451--Sobic003G253000 Sobic003G220600 Sobic003G220600 Sobic003G367451--Sobic003G220600 Sobic001G005900--Sobic009G198500 Sobic001G005900--Sobic004G327300 Sobic004G300900 Sobic004G300900 Sobic001G005900--Sobic004G300900 Sobic001G048832 Sobic001G048832 Sobic001G005900--Sobic001G048832 Sobic002G078400 Sobic002G078400 Sobic001G005900--Sobic002G078400 Sobic001G502200 Sobic001G502200 Sobic001G005900--Sobic001G502200 Sobic001G005900--Sobic004G130900 Sobic001G005900--Sobic007G096700 Sobic001G501200 Sobic001G501200 Sobic001G005900--Sobic001G501200 Sobic007G096700--Sobic009G198500 Sobic007G096700--Sobic004G327300 Sobic009G122100 Sobic009G122100 Sobic007G096700--Sobic009G122100 Sobic007G096700--Sobic001G501200 Sobic007G096700--Sobic001G005900 Sobic007G096700--Sobic002G400000 Sobic007G096700--Sobic004G130900 Sobic001G175800 Sobic001G175800 Sobic007G096700--Sobic001G175800 Sobic007G096700--Sobic004G300900 Sobic004G272300 Sobic004G272300 Sobic009G198500--Sobic004G272300 Sobic009G198500--Sobic003G124800 Sobic009G198500--Sobic002G400000 Sobic009G198500--Sobic007G168600 Sobic009G198500--Sobic002G078400 Sobic009G198500--Sobic004G300900 Sobic009G198500--Sobic001G005900 Sobic009G198500--Sobic007G096700 Sobic006G212100 Sobic006G212100 Sobic009G198500--Sobic006G212100 Sobic010G000900--Sobic002G400000 Sobic003G012200 Sobic003G012200 Sobic010G000900--Sobic003G012200 Sobic001G047400 Sobic001G047400 Sobic010G000900--Sobic001G047400 Sobic010G000900--Sobic003G261400 Sobic010G000900--Sobic004G130900 Sobic010G000900--Sobic001G051200 Sobic001G323000 Sobic001G323000 Sobic010G000900--Sobic001G323000 Sobic001G388200 Sobic001G388200 Sobic010G000900--Sobic001G388200 Sobic001G085100 Sobic001G085100 Sobic010G000900--Sobic001G085100 Sobic007G168600--Sobic002G400000 Sobic007G168600--Sobic009G198500 Sobic004G086600 Sobic004G086600 Sobic007G168600--Sobic004G086600 Sobic007G168600--Sobic001G502200 Sobic007G168600--Sobic003G077900 Sobic010G205300 Sobic010G205300 Sobic007G168600--Sobic010G205300 Sobic007G168600--Sobic003G124800 Sobic007G168600--Sobic001G461900 Sobic001G314500 Sobic001G314500 Sobic007G168600--Sobic001G314500
Octagon: transcription factors


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