Gene annotation
Transcriptome id Sobic.004G086600.1
Synonym ATSUG1, RPT6A, Sb04g007170
Functional annotation 26S protease regulatory subunit, putative, expressed
UniProt C5XXY0
Pfam PF07724
Panther DB PTHR23073 PTHR23073:SF12
NCBI CDD -
KEGG Orthology K03066; PSMC5, 26S proteasome regulatory subunit T6
Gene Ontology GO:0005524; ATP binding


Orthologs (automatic annotation)
TAIR AT5G19990 : regulatory particle triple-A ATPase 6A
RAP-DB (Rice) LOC_Os02g11050.1 : 26S protease regulatory subunit, putative, expressed
MaizeGDB (Corn) Zm00025a020258 , Zm00025a034599
Brachypodium KQK17803 , KQJ93953
Barley HORVU6Hr1G036990.7 , HORVU6Hr1G036990.6 , HORVU6Hr1G036990.5 , HORVU6Hr1G036990.4 , HORVU6Hr1G036990.3 , HORVU6Hr1G036990.2 , HORVU6Hr1G036990.1 , HORVU6Hr1G036990.9 , HORVU6Hr1G036990.8 , HORVU7Hr1G084550.1 , HORVU7Hr1G084550.3 , HORVU7Hr1G084550.2 , HORVU7Hr1G084550.5 , HORVU7Hr1G084550.4 , HORVU6Hr1G036990.10
Wheat TraesCS7A02G372600 , TraesCS7A02G372600 , TraesCS6B02G207100 , TraesCS7D02G350300 , TraesCS6D02G166700 , TraesCS7D02G062500 , TraesCS7B02G254400 , TraesCS6A02G177600
Populus -


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cDNA sequences
Sobic.004G086600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G168600 vesicle-associated membrane protein 727, putative, expressed K08511: vesicle-associated membrane protein 72
2 Sobic.007G045600 MSP domain containing protein, expressed -
3 Sobic.001G007200 HSF-type DNA-binding domain containing protein, expressed K09419: heat shock transcription factor, other eukaryote
4 Sobic.001G502200 peptidase, T1 family, putative, expressed K02729: 20S proteasome subunit alpha 5
5 Sobic.006G232200 SNARE domain containing protein, putative, expressed K08501: syntaxin 8
K08503: syntaxin of plants SYP5
6 Sobic.001G461900 vesicle transport protein GOT1B, putative, expressed -
7 Sobic.003G124800 26S proteasome non-ATPase regulatory subunit 14, putative, expressed K03030: PSMD14, RPN11, 26S proteasome regulatory subunit N11
8 Sobic.001G415500 zinc finger, C3HC4 type domain containing protein, expressed K13125: nitric oxide synthase-interacting protein
9 Sobic.003G015900 CWC15 homolog A, putative, expressed K12863: protein CWC15
10 Sobic.003G248600 26S protease regulatory subunit 7, putative, expressed K03061: PSMC2, 26S proteasome regulatory subunit T1
11 Sobic.002G400000 MBTB14 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
12 Sobic.007G186300 ankyrin repeat domain containing protein, putative, expressed -
13 Sobic.001G051200 vesicle-associated membrane protein, putative, expressed K08511: vesicle-associated membrane protein 72
K08515: vesicle-associated membrane protein 7
14 Sobic.009G198500 ras-related protein, putative, expressed K07897: Ras-related protein Rab-7A
15 Sobic.007G142500 EF hand family protein, putative, expressed K06268: PPP3R, serine/threonine-protein phosphatase 2B regulatory subunit
16 Sobic.009G135600 UBA/TS-N domain containing protein, expressed -
17 Sobic.009G146100 RNA recognition motif containing protein, putative, expressed K12831: SF3B4, splicing factor 3B subunit 4
18 Sobic.010G083700 formin-binding protein-related, putative, expressed K13220: WBP4, WW domain-binding protein 4
19 Sobic.001G054200 green ripe-like, putative, expressed -
20 Sobic.001G388200 ELMO/CED-12 family protein, putative, expressed -


Gene co-expression network
sample Sobic004G086600 Sobic004G086600 Sobic007G168600 Sobic007G168600 Sobic004G086600--Sobic007G168600 Sobic007G045600 Sobic007G045600 Sobic004G086600--Sobic007G045600 Sobic001G007200 Sobic001G007200 Sobic004G086600--Sobic001G007200 Sobic001G502200 Sobic001G502200 Sobic004G086600--Sobic001G502200 Sobic006G232200 Sobic006G232200 Sobic004G086600--Sobic006G232200 Sobic001G461900 Sobic001G461900 Sobic004G086600--Sobic001G461900 Sobic003G124800 Sobic003G124800 Sobic004G086600--Sobic003G124800 Sobic001G415500 Sobic001G415500 Sobic004G086600--Sobic001G415500 Sobic003G015900 Sobic003G015900 Sobic004G086600--Sobic003G015900 Sobic002G400000 Sobic002G400000 Sobic007G168600--Sobic002G400000 Sobic009G198500 Sobic009G198500 Sobic007G168600--Sobic009G198500 Sobic007G168600--Sobic004G086600 Sobic007G168600--Sobic001G502200 Sobic003G077900 Sobic003G077900 Sobic007G168600--Sobic003G077900 Sobic010G205300 Sobic010G205300 Sobic007G168600--Sobic010G205300 Sobic007G168600--Sobic003G124800 Sobic007G168600--Sobic001G461900 Sobic001G314500 Sobic001G314500 Sobic007G168600--Sobic001G314500 Sobic007G114200 Sobic007G114200 Sobic007G045600--Sobic007G114200 Sobic007G019100 Sobic007G019100 Sobic007G045600--Sobic007G019100 Sobic007G045600--Sobic003G124800 Sobic007G045600--Sobic006G232200 Sobic003G261400 Sobic003G261400 Sobic007G045600--Sobic003G261400 Sobic007G142500 Sobic007G142500 Sobic007G045600--Sobic007G142500 Sobic007G045600--Sobic004G086600 Sobic007G045600--Sobic001G461900 Sobic007G118000 Sobic007G118000 Sobic007G045600--Sobic007G118000 Sobic010G083700 Sobic010G083700 Sobic001G007200--Sobic010G083700 Sobic001G007200--Sobic001G415500 Sobic007G186300 Sobic007G186300 Sobic001G007200--Sobic007G186300 Sobic010G253800 Sobic010G253800 Sobic001G007200--Sobic010G253800 Sobic001G007200--Sobic004G086600 Sobic001G073000 Sobic001G073000 Sobic001G007200--Sobic001G073000 Sobic009G246950 Sobic009G246950 Sobic001G007200--Sobic009G246950 Sobic004G141700 Sobic004G141700 Sobic001G007200--Sobic004G141700 Sobic009G146100 Sobic009G146100 Sobic001G007200--Sobic009G146100 Sobic001G315500 Sobic001G315500 Sobic001G502200--Sobic001G315500 Sobic001G502200--Sobic007G168600 Sobic004G224900 Sobic004G224900 Sobic001G502200--Sobic004G224900 Sobic001G502200--Sobic003G124800 Sobic001G458700 Sobic001G458700 Sobic001G502200--Sobic001G458700 Sobic003G330500 Sobic003G330500 Sobic001G502200--Sobic003G330500 Sobic002G428200 Sobic002G428200 Sobic001G502200--Sobic002G428200 Sobic002G078400 Sobic002G078400 Sobic001G502200--Sobic002G078400 Sobic006G252200 Sobic006G252200 Sobic001G502200--Sobic006G252200 Sobic006G232200--Sobic003G124800 Sobic006G232200--Sobic007G045600 Sobic001G143300 Sobic001G143300 Sobic006G232200--Sobic001G143300 Sobic006G232200--Sobic009G198500 Sobic004G130100 Sobic004G130100 Sobic006G232200--Sobic004G130100 Sobic003G323600 Sobic003G323600 Sobic006G232200--Sobic003G323600 Sobic001G054200 Sobic001G054200 Sobic006G232200--Sobic001G054200 Sobic008G161800 Sobic008G161800 Sobic006G232200--Sobic008G161800 Sobic001G388200 Sobic001G388200 Sobic006G232200--Sobic001G388200 Sobic009G135600 Sobic009G135600 Sobic001G461900--Sobic009G135600 Sobic001G461900--Sobic007G045600 Sobic001G461900--Sobic009G146100 Sobic004G327300 Sobic004G327300 Sobic001G461900--Sobic004G327300 Sobic001G461900--Sobic007G142500 Sobic001G461900--Sobic007G168600 Sobic001G461900--Sobic004G086600 Sobic004G335000 Sobic004G335000 Sobic001G461900--Sobic004G335000 Sobic007G096700 Sobic007G096700 Sobic001G461900--Sobic007G096700 Sobic003G124800--Sobic009G198500 Sobic001G439600 Sobic001G439600 Sobic003G124800--Sobic001G439600 Sobic003G124800--Sobic006G232200 Sobic003G124800--Sobic001G502200 Sobic003G124800--Sobic007G045600 Sobic001G529000 Sobic001G529000 Sobic003G124800--Sobic001G529000 Sobic003G124800--Sobic007G168600 Sobic006G150600 Sobic006G150600 Sobic003G124800--Sobic006G150600 Sobic004G066800 Sobic004G066800 Sobic003G124800--Sobic004G066800 Sobic001G415500--Sobic001G007200 Sobic001G415500--Sobic008G161800 Sobic003G253000 Sobic003G253000 Sobic001G415500--Sobic003G253000 Sobic001G415500--Sobic009G146100 Sobic006G108400 Sobic006G108400 Sobic001G415500--Sobic006G108400 Sobic006G141500 Sobic006G141500 Sobic001G415500--Sobic006G141500 Sobic004G049900 Sobic004G049900 Sobic001G415500--Sobic004G049900 Sobic004G293700 Sobic004G293700 Sobic001G415500--Sobic004G293700 Sobic010G121300 Sobic010G121300 Sobic001G415500--Sobic010G121300 Sobic001G051200 Sobic001G051200 Sobic003G015900--Sobic001G051200 Sobic003G015900--Sobic010G083700 Sobic002G352600 Sobic002G352600 Sobic003G015900--Sobic002G352600 Sobic001G047400 Sobic001G047400 Sobic003G015900--Sobic001G047400 Sobic009G165800 Sobic009G165800 Sobic003G015900--Sobic009G165800 Sobic003G015900--Sobic004G086600 Sobic004G253000 Sobic004G253000 Sobic003G015900--Sobic004G253000 Sobic010G000900 Sobic010G000900 Sobic003G015900--Sobic010G000900 Sobic003G015900--Sobic009G246950
Octagon: transcription factors


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