Gene annotation
Transcriptome id Sobic.003G248600.1
Synonym Sb03g030500, RPT1A
Functional annotation 26S protease regulatory subunit 7, putative, expressed
UniProt C5XFY9
Pfam PF07724
Panther DB PTHR23073
NCBI CDD -
KEGG Orthology K03061; PSMC2, 26S proteasome regulatory subunit T1
Gene Ontology GO:0005524; ATP binding


Orthologs (automatic annotation)
TAIR AT1G53750 : regulatory particle triple-A 1A
RAP-DB (Rice) LOC_Os02g54340.1 : 26S protease regulatory subunit 7, putative, expressed
MaizeGDB (Corn) Zm00025a032997 , Zm00025a022380
Brachypodium KQK09566 , KQK19178
Barley HORVU6Hr1G083150.2 , HORVU6Hr1G083150.1
Wheat TraesCS7A02G156800 , TraesCS7D02G157200 , TraesCSU02G080700 , TraesCS6B02G376500 , TraesCS6B02G376500 , TraesCS7B02G060900 , TraesCS6D02G326400
Populus -


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cDNA sequences
Sobic.003G248600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G220600 SNF7 domain containing protein, putative, expressed K12194: CHMP4, SNF7, charged multivesicular body protein 4
2 Sobic.007G186300 ankyrin repeat domain containing protein, putative, expressed -
3 Sobic.007G045600 MSP domain containing protein, expressed -
4 Sobic.005G176000 zinc finger family protein, putative, expressed -
5 Sobic.004G321900 26S protease regulatory subunit 7, putative, expressed K03061: PSMC2, 26S proteasome regulatory subunit T1
6 Sobic.001G403700 mitochondrial carrier protein, putative, expressed K15113: SLC25A28_37, solute carrier family 25 (mitochondrial iron transporter), member 28/37
7 Sobic.009G146100 RNA recognition motif containing protein, putative, expressed K12831: SF3B4, splicing factor 3B subunit 4
8 Sobic.002G296300 expressed protein -
9 Sobic.001G073000 expressed protein K09659: dolichol-phosphate mannosyltransferase subunit 3
10 Sobic.004G086600 26S protease regulatory subunit, putative, expressed K03066: PSMC5, 26S proteasome regulatory subunit T6
11 Sobic.002G078400 ADP-ribosylation factor, putative, expressed K07937: ADP-ribosylation factor 1/2
K07977: Arf/Sar family, other
12 Sobic.001G461900 vesicle transport protein GOT1B, putative, expressed -
13 Sobic.004G107600 prefoldin subunit, putative, expressed K04798: pfdB, prefoldin beta subunit
14 Sobic.003G115800 miro, putative, expressed K07953: GTP-binding protein SAR1
15 Sobic.003G107600 3-beta-hydroxysteroid-Delta-isomerase, putative, expressed K01824: cholestenol Delta-isomerase
16 Sobic.001G331900 expressed protein -
17 Sobic.003G253000 ubiquitin-conjugating enzyme, putative, expressed K10580: UBE2N, BLU, ubiquitin-conjugating enzyme E2 N
18 Sobic.007G168600 vesicle-associated membrane protein 727, putative, expressed K08511: vesicle-associated membrane protein 72
19 Sobic.001G216200 transcription factor BTF3, putative, expressed K01527: EGD1, nascent polypeptide-associated complex subunit beta
20 Sobic.004G350300 No apical meristem protein, putative, expressed -


Gene co-expression network
sample Sobic003G248600 Sobic003G248600 Sobic003G220600 Sobic003G220600 Sobic003G248600--Sobic003G220600 Sobic007G186300 Sobic007G186300 Sobic003G248600--Sobic007G186300 Sobic007G045600 Sobic007G045600 Sobic003G248600--Sobic007G045600 Sobic005G176000 Sobic005G176000 Sobic003G248600--Sobic005G176000 Sobic004G321900 Sobic004G321900 Sobic003G248600--Sobic004G321900 Sobic001G403700 Sobic001G403700 Sobic003G248600--Sobic001G403700 Sobic009G146100 Sobic009G146100 Sobic003G248600--Sobic009G146100 Sobic002G296300 Sobic002G296300 Sobic003G248600--Sobic002G296300 Sobic001G073000 Sobic001G073000 Sobic003G248600--Sobic001G073000 Sobic003G220600--Sobic003G248600 Sobic002G202300 Sobic002G202300 Sobic003G220600--Sobic002G202300 Sobic003G253000 Sobic003G253000 Sobic003G220600--Sobic003G253000 Sobic003G115800 Sobic003G115800 Sobic003G220600--Sobic003G115800 Sobic007G059900 Sobic007G059900 Sobic003G220600--Sobic007G059900 Sobic004G293700 Sobic004G293700 Sobic003G220600--Sobic004G293700 Sobic004G300900 Sobic004G300900 Sobic003G220600--Sobic004G300900 Sobic003G367451 Sobic003G367451 Sobic003G220600--Sobic003G367451 Sobic003G220600--Sobic009G146100 Sobic003G007500 Sobic003G007500 Sobic007G186300--Sobic003G007500 Sobic001G054200 Sobic001G054200 Sobic007G186300--Sobic001G054200 Sobic007G186300--Sobic003G115800 Sobic007G186300--Sobic003G248600 Sobic001G007200 Sobic001G007200 Sobic007G186300--Sobic001G007200 Sobic009G246950 Sobic009G246950 Sobic007G186300--Sobic009G246950 Sobic010G083700 Sobic010G083700 Sobic007G186300--Sobic010G083700 Sobic007G186300--Sobic009G146100 Sobic009G152200 Sobic009G152200 Sobic007G186300--Sobic009G152200 Sobic007G114200 Sobic007G114200 Sobic007G045600--Sobic007G114200 Sobic007G019100 Sobic007G019100 Sobic007G045600--Sobic007G019100 Sobic003G124800 Sobic003G124800 Sobic007G045600--Sobic003G124800 Sobic006G232200 Sobic006G232200 Sobic007G045600--Sobic006G232200 Sobic003G261400 Sobic003G261400 Sobic007G045600--Sobic003G261400 Sobic007G142500 Sobic007G142500 Sobic007G045600--Sobic007G142500 Sobic004G086600 Sobic004G086600 Sobic007G045600--Sobic004G086600 Sobic001G461900 Sobic001G461900 Sobic007G045600--Sobic001G461900 Sobic007G118000 Sobic007G118000 Sobic007G045600--Sobic007G118000 Sobic005G176000--Sobic002G296300 Sobic005G176000--Sobic003G248600 Sobic005G176000--Sobic003G220600 Sobic005G176000--Sobic001G403700 Sobic010G253800 Sobic010G253800 Sobic005G176000--Sobic010G253800 Sobic005G176000--Sobic003G115800 Sobic001G283500 Sobic001G283500 Sobic005G176000--Sobic001G283500 Sobic001G434900 Sobic001G434900 Sobic005G176000--Sobic001G434900 Sobic005G176000--Sobic007G186300 Sobic004G321900--Sobic003G248600 Sobic002G166900 Sobic002G166900 Sobic004G321900--Sobic002G166900 Sobic004G350300 Sobic004G350300 Sobic004G321900--Sobic004G350300 Sobic009G005900 Sobic009G005900 Sobic004G321900--Sobic009G005900 Sobic009G257600 Sobic009G257600 Sobic004G321900--Sobic009G257600 Sobic007G168600 Sobic007G168600 Sobic004G321900--Sobic007G168600 Sobic001G440700 Sobic001G440700 Sobic004G321900--Sobic001G440700 Sobic001G283200 Sobic001G283200 Sobic004G321900--Sobic001G283200 Sobic004G321900--Sobic003G220600 Sobic009G111600 Sobic009G111600 Sobic001G403700--Sobic009G111600 Sobic004G284500 Sobic004G284500 Sobic001G403700--Sobic004G284500 Sobic002G078400 Sobic002G078400 Sobic001G403700--Sobic002G078400 Sobic006G182100 Sobic006G182100 Sobic001G403700--Sobic006G182100 Sobic001G403700--Sobic002G296300 Sobic001G403700--Sobic003G248600 Sobic008G132800 Sobic008G132800 Sobic001G403700--Sobic008G132800 Sobic002G214900 Sobic002G214900 Sobic001G403700--Sobic002G214900 Sobic010G213400 Sobic010G213400 Sobic001G403700--Sobic010G213400 Sobic009G146100--Sobic010G253800 Sobic009G146100--Sobic003G253000 Sobic001G415500 Sobic001G415500 Sobic009G146100--Sobic001G415500 Sobic001G433400 Sobic001G433400 Sobic009G146100--Sobic001G433400 Sobic009G135600 Sobic009G135600 Sobic009G146100--Sobic009G135600 Sobic008G161800 Sobic008G161800 Sobic009G146100--Sobic008G161800 Sobic009G146100--Sobic007G186300 Sobic009G146100--Sobic001G461900 Sobic009G146100--Sobic007G045600 Sobic002G296300--Sobic005G176000 Sobic008G097401 Sobic008G097401 Sobic002G296300--Sobic008G097401 Sobic010G204300 Sobic010G204300 Sobic002G296300--Sobic010G204300 Sobic002G296300--Sobic007G186300 Sobic002G296300--Sobic003G220600 Sobic002G296300--Sobic003G115800 Sobic003G332401 Sobic003G332401 Sobic002G296300--Sobic003G332401 Sobic002G296300--Sobic001G403700 Sobic002G296300--Sobic003G007500 Sobic009G228800 Sobic009G228800 Sobic001G073000--Sobic009G228800 Sobic001G073000--Sobic010G083700 Sobic001G073000--Sobic001G007200 Sobic001G073000--Sobic001G415500 Sobic001G073000--Sobic007G186300 Sobic001G073000--Sobic001G054200 Sobic001G073000--Sobic009G246950 Sobic001G073000--Sobic010G253800 Sobic001G073000--Sobic003G248600
Octagon: transcription factors


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