Gene annotation
Transcriptome id Sobic.005G176000.4,Sobic.005G176000.2,Sobic.005G176000.1,Sobic.005G176000.3
Synonym Sb05g023550
Functional annotation zinc finger family protein, putative, expressed
UniProt A0A1B6PT67 , A0A1B6PT61 , A0A1B6PT70 , A0A1B6PT63
Pfam PF12906 PF12428 PF12428
Panther DB PTHR23012 PTHR23012:SF57
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding


Orthologs (automatic annotation)
TAIR AT2G02960 : RING/FYVE/PHD zinc finger superfamily protein
RAP-DB (Rice) LOC_Os11g38800.1,LOC_Os11g38800.2 : zinc finger family protein, putative, expressed
MaizeGDB (Corn) Zm00025a029444 , Zm00025a031728
Brachypodium KQJ87921 , KQJ87922 , KQJ87923
Barley -
Wheat TraesCS4B02G149000 , TraesCS4B02G149000 , TraesCS4A02G164100 , TraesCS4D02G147800
Populus PNT23537 , PNT23536 , PNT23539 , PNT23538


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G296300 expressed protein -
2 Sobic.003G248600 26S protease regulatory subunit 7, putative, expressed K03061: PSMC2, 26S proteasome regulatory subunit T1
3 Sobic.003G220600 SNF7 domain containing protein, putative, expressed K12194: CHMP4, SNF7, charged multivesicular body protein 4
4 Sobic.001G403700 mitochondrial carrier protein, putative, expressed K15113: SLC25A28_37, solute carrier family 25 (mitochondrial iron transporter), member 28/37
5 Sobic.010G253800 expressed protein -
6 Sobic.003G115800 miro, putative, expressed K07953: GTP-binding protein SAR1
7 Sobic.001G283500 VHS and GAT domain containing protein, expressed -
8 Sobic.001G434900 serine palmitoyltransferase 1, putative, expressed K00654: serine palmitoyltransferase
9 Sobic.007G186300 ankyrin repeat domain containing protein, putative, expressed -
10 Sobic.010G163600 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
11 Sobic.010G204300 expressed protein -
12 Sobic.001G331900 expressed protein -
13 Sobic.002G214900 polygalacturonase, putative, expressed -
14 Sobic.002G352700 expressed protein K08505: protein transport protein SFT1
15 Sobic.003G362400 G10 protein, putative, expressed K12873: BUD31, bud site selection protein 31
16 Sobic.009G146100 RNA recognition motif containing protein, putative, expressed K12831: SF3B4, splicing factor 3B subunit 4
17 Sobic.003G295400 MAC/Perforin domain containing protein, putative, expressed -
18 Sobic.004G107600 prefoldin subunit, putative, expressed K04798: pfdB, prefoldin beta subunit
19 Sobic.002G122700 expressed protein -
20 Sobic.004G183400 expressed protein -


Gene co-expression network
sample Sobic005G176000 Sobic005G176000 Sobic002G296300 Sobic002G296300 Sobic005G176000--Sobic002G296300 Sobic003G248600 Sobic003G248600 Sobic005G176000--Sobic003G248600 Sobic003G220600 Sobic003G220600 Sobic005G176000--Sobic003G220600 Sobic001G403700 Sobic001G403700 Sobic005G176000--Sobic001G403700 Sobic010G253800 Sobic010G253800 Sobic005G176000--Sobic010G253800 Sobic003G115800 Sobic003G115800 Sobic005G176000--Sobic003G115800 Sobic001G283500 Sobic001G283500 Sobic005G176000--Sobic001G283500 Sobic001G434900 Sobic001G434900 Sobic005G176000--Sobic001G434900 Sobic007G186300 Sobic007G186300 Sobic005G176000--Sobic007G186300 Sobic002G296300--Sobic005G176000 Sobic008G097401 Sobic008G097401 Sobic002G296300--Sobic008G097401 Sobic010G204300 Sobic010G204300 Sobic002G296300--Sobic010G204300 Sobic002G296300--Sobic007G186300 Sobic002G296300--Sobic003G220600 Sobic002G296300--Sobic003G115800 Sobic003G332401 Sobic003G332401 Sobic002G296300--Sobic003G332401 Sobic002G296300--Sobic001G403700 Sobic003G007500 Sobic003G007500 Sobic002G296300--Sobic003G007500 Sobic003G248600--Sobic003G220600 Sobic003G248600--Sobic007G186300 Sobic007G045600 Sobic007G045600 Sobic003G248600--Sobic007G045600 Sobic003G248600--Sobic005G176000 Sobic004G321900 Sobic004G321900 Sobic003G248600--Sobic004G321900 Sobic003G248600--Sobic001G403700 Sobic009G146100 Sobic009G146100 Sobic003G248600--Sobic009G146100 Sobic003G248600--Sobic002G296300 Sobic001G073000 Sobic001G073000 Sobic003G248600--Sobic001G073000 Sobic003G220600--Sobic003G248600 Sobic002G202300 Sobic002G202300 Sobic003G220600--Sobic002G202300 Sobic003G253000 Sobic003G253000 Sobic003G220600--Sobic003G253000 Sobic003G220600--Sobic003G115800 Sobic007G059900 Sobic007G059900 Sobic003G220600--Sobic007G059900 Sobic004G293700 Sobic004G293700 Sobic003G220600--Sobic004G293700 Sobic004G300900 Sobic004G300900 Sobic003G220600--Sobic004G300900 Sobic003G367451 Sobic003G367451 Sobic003G220600--Sobic003G367451 Sobic003G220600--Sobic009G146100 Sobic009G111600 Sobic009G111600 Sobic001G403700--Sobic009G111600 Sobic004G284500 Sobic004G284500 Sobic001G403700--Sobic004G284500 Sobic002G078400 Sobic002G078400 Sobic001G403700--Sobic002G078400 Sobic006G182100 Sobic006G182100 Sobic001G403700--Sobic006G182100 Sobic001G403700--Sobic002G296300 Sobic001G403700--Sobic003G248600 Sobic008G132800 Sobic008G132800 Sobic001G403700--Sobic008G132800 Sobic002G214900 Sobic002G214900 Sobic001G403700--Sobic002G214900 Sobic010G213400 Sobic010G213400 Sobic001G403700--Sobic010G213400 Sobic010G253800--Sobic009G146100 Sobic010G253800--Sobic004G293700 Sobic010G083700 Sobic010G083700 Sobic010G253800--Sobic010G083700 Sobic002G247500 Sobic002G247500 Sobic010G253800--Sobic002G247500 Sobic002G352700 Sobic002G352700 Sobic010G253800--Sobic002G352700 Sobic001G007200 Sobic001G007200 Sobic010G253800--Sobic001G007200 Sobic006G263900 Sobic006G263900 Sobic010G253800--Sobic006G263900 Sobic009G171700 Sobic009G171700 Sobic010G253800--Sobic009G171700 Sobic001G054200 Sobic001G054200 Sobic010G253800--Sobic001G054200 Sobic003G115800--Sobic007G186300 Sobic003G115800--Sobic004G300900 Sobic003G115800--Sobic003G220600 Sobic003G115800--Sobic002G078400 Sobic003G115800--Sobic010G204300 Sobic003G115800--Sobic001G054200 Sobic003G115800--Sobic002G202300 Sobic004G079100 Sobic004G079100 Sobic003G115800--Sobic004G079100 Sobic003G115800--Sobic004G293700 Sobic008G016900 Sobic008G016900 Sobic001G283500--Sobic008G016900 Sobic007G195701 Sobic007G195701 Sobic001G283500--Sobic007G195701 Sobic001G283500--Sobic001G403700 Sobic001G283500--Sobic003G115800 Sobic009G160200 Sobic009G160200 Sobic001G283500--Sobic009G160200 Sobic001G283500--Sobic010G204300 Sobic001G283500--Sobic002G296300 Sobic010G062800 Sobic010G062800 Sobic001G283500--Sobic010G062800 Sobic010G188100 Sobic010G188100 Sobic001G283500--Sobic010G188100 Sobic002G122700 Sobic002G122700 Sobic001G434900--Sobic002G122700 Sobic004G350300 Sobic004G350300 Sobic001G434900--Sobic004G350300 Sobic003G002400 Sobic003G002400 Sobic001G434900--Sobic003G002400 Sobic003G367300 Sobic003G367300 Sobic001G434900--Sobic003G367300 Sobic006G225600 Sobic006G225600 Sobic001G434900--Sobic006G225600 Sobic001G434900--Sobic005G176000 Sobic001G434900--Sobic003G248600 Sobic001G162100 Sobic001G162100 Sobic001G434900--Sobic001G162100 Sobic004G274400 Sobic004G274400 Sobic001G434900--Sobic004G274400 Sobic007G186300--Sobic003G007500 Sobic007G186300--Sobic001G054200 Sobic007G186300--Sobic003G115800 Sobic007G186300--Sobic003G248600 Sobic007G186300--Sobic001G007200 Sobic009G246950 Sobic009G246950 Sobic007G186300--Sobic009G246950 Sobic007G186300--Sobic010G083700 Sobic007G186300--Sobic009G146100 Sobic009G152200 Sobic009G152200 Sobic007G186300--Sobic009G152200
Octagon: transcription factors


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