Gene annotation
Transcriptome id Sobic.001G051200.1
Synonym ATVAMP725, VAMP725, Sb01g004700
Functional annotation vesicle-associated membrane protein, putative, expressed
UniProt A0A1Z5S4Y8
Pfam PF13774 PF00957
Panther DB PTHR21136 PTHR21136:SF87
NCBI CDD KOG0859; Synaptobrevin/VAMP-like protein
KEGG Orthology K08511; vesicle-associated membrane protein 72 K08515vesicle-associated membrane protein 7
Gene Ontology GO:0016192; vesicle-mediated transport GO:0016021integral component of membrane


Orthologs (automatic annotation)
TAIR AT1G04760 : vesicle-associated membrane protein 726
RAP-DB (Rice) LOC_Os07g09600.1 : vesicle-associated membrane protein, putative, expressed
MaizeGDB (Corn) Zm00025a016026 , Zm00025a008615 , Zm00025a045302 , Zm00025a016540
Brachypodium KQK20466 , KQK12635 , KQK12634
Barley HORVU5Hr1G107510.2 , HORVU5Hr1G107510.1
Wheat TraesCS3B02G193500 , TraesCS5A02G449900 , TraesCS5D02G459900 , TraesCS5B02G457700
Populus -


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cDNA sequences
Sobic.001G051200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G015900 CWC15 homolog A, putative, expressed K12863: protein CWC15
2 Sobic.003G007500 CK1_CaseinKinase_1.1 - CK1 includes the casein kinase 1 kinases, expressed -
3 Sobic.003G261400 DUF292 domain containing protein, expressed -
4 Sobic.001G047400 SNF7 domain containing protein, putative, expressed K12194: CHMP4, SNF7, charged multivesicular body protein 4
5 Sobic.010G000900 spotted leaf 11, putative, expressed -
6 Sobic.007G168600 vesicle-associated membrane protein 727, putative, expressed K08511: vesicle-associated membrane protein 72
7 Sobic.010G058500 vesicle-associated membrane protein, putative, expressed K08515: vesicle-associated membrane protein 7
8 Sobic.002G400000 MBTB14 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
9 Sobic.010G168600 ethylene-responsive element-binding protein, putative, expressed -
10 Sobic.003G295400 MAC/Perforin domain containing protein, putative, expressed -
11 Sobic.010G080200 emp24/gp25L/p24 family protein, putative, expressed -
12 Sobic.001G323000 UBX domain-containing protein, putative, expressed K18726: FAF2, FAS-associated factor 2
13 Sobic.004G086600 26S protease regulatory subunit, putative, expressed K03066: PSMC5, 26S proteasome regulatory subunit T6
14 Sobic.003G217400 zinc finger, C3HC4 type family protein, expressed -
15 Sobic.002G352700 expressed protein K08505: protein transport protein SFT1
16 Sobic.009G198500 ras-related protein, putative, expressed K07897: Ras-related protein Rab-7A
17 Sobic.004G253000 AGAP000425-PA, putative, expressed K13120: protein FAM32A
18 Sobic.003G261500 lipase, putative, expressed -
19 Sobic.006G225600 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
20 Sobic.001G078800 similar to Serine/threonine-protein kinase SAPK8(PubMedID : 29862293)@CAMK_CAMK_like.22 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K14498: serine/threonine-protein kinase SRK2


Gene co-expression network
sample Sobic001G051200 Sobic001G051200 Sobic003G015900 Sobic003G015900 Sobic001G051200--Sobic003G015900 Sobic003G007500 Sobic003G007500 Sobic001G051200--Sobic003G007500 Sobic003G261400 Sobic003G261400 Sobic001G051200--Sobic003G261400 Sobic001G047400 Sobic001G047400 Sobic001G051200--Sobic001G047400 Sobic010G000900 Sobic010G000900 Sobic001G051200--Sobic010G000900 Sobic007G168600 Sobic007G168600 Sobic001G051200--Sobic007G168600 Sobic010G058500 Sobic010G058500 Sobic001G051200--Sobic010G058500 Sobic002G400000 Sobic002G400000 Sobic001G051200--Sobic002G400000 Sobic010G168600 Sobic010G168600 Sobic001G051200--Sobic010G168600 Sobic003G015900--Sobic001G051200 Sobic010G083700 Sobic010G083700 Sobic003G015900--Sobic010G083700 Sobic002G352600 Sobic002G352600 Sobic003G015900--Sobic002G352600 Sobic003G015900--Sobic001G047400 Sobic009G165800 Sobic009G165800 Sobic003G015900--Sobic009G165800 Sobic004G086600 Sobic004G086600 Sobic003G015900--Sobic004G086600 Sobic004G253000 Sobic004G253000 Sobic003G015900--Sobic004G253000 Sobic003G015900--Sobic010G000900 Sobic009G246950 Sobic009G246950 Sobic003G015900--Sobic009G246950 Sobic007G186300 Sobic007G186300 Sobic003G007500--Sobic007G186300 Sobic003G007500--Sobic010G083700 Sobic003G007500--Sobic010G168600 Sobic001G078500 Sobic001G078500 Sobic003G007500--Sobic001G078500 Sobic003G295400 Sobic003G295400 Sobic003G007500--Sobic003G295400 Sobic003G007500--Sobic001G051200 Sobic004G072800 Sobic004G072800 Sobic003G007500--Sobic004G072800 Sobic004G104900 Sobic004G104900 Sobic003G007500--Sobic004G104900 Sobic002G281300 Sobic002G281300 Sobic003G007500--Sobic002G281300 Sobic001G283200 Sobic001G283200 Sobic003G261400--Sobic001G283200 Sobic003G261400--Sobic002G281300 Sobic003G261500 Sobic003G261500 Sobic003G261400--Sobic003G261500 Sobic007G045600 Sobic007G045600 Sobic003G261400--Sobic007G045600 Sobic001G458700 Sobic001G458700 Sobic003G261400--Sobic001G458700 Sobic004G130900 Sobic004G130900 Sobic003G261400--Sobic004G130900 Sobic003G124800 Sobic003G124800 Sobic003G261400--Sobic003G124800 Sobic003G261400--Sobic001G051200 Sobic003G261400--Sobic010G000900 Sobic002G116900 Sobic002G116900 Sobic001G047400--Sobic002G116900 Sobic001G047400--Sobic009G165800 Sobic001G047400--Sobic010G000900 Sobic001G085100 Sobic001G085100 Sobic001G047400--Sobic001G085100 Sobic010G251000 Sobic010G251000 Sobic001G047400--Sobic010G251000 Sobic001G047400--Sobic003G015900 Sobic001G047400--Sobic001G051200 Sobic001G261436 Sobic001G261436 Sobic001G047400--Sobic001G261436 Sobic009G228700 Sobic009G228700 Sobic001G047400--Sobic009G228700 Sobic010G000900--Sobic002G400000 Sobic003G012200 Sobic003G012200 Sobic010G000900--Sobic003G012200 Sobic010G000900--Sobic001G047400 Sobic010G000900--Sobic003G261400 Sobic010G000900--Sobic004G130900 Sobic010G000900--Sobic001G051200 Sobic001G323000 Sobic001G323000 Sobic010G000900--Sobic001G323000 Sobic001G388200 Sobic001G388200 Sobic010G000900--Sobic001G388200 Sobic010G000900--Sobic001G085100 Sobic007G168600--Sobic002G400000 Sobic009G198500 Sobic009G198500 Sobic007G168600--Sobic009G198500 Sobic007G168600--Sobic004G086600 Sobic001G502200 Sobic001G502200 Sobic007G168600--Sobic001G502200 Sobic003G077900 Sobic003G077900 Sobic007G168600--Sobic003G077900 Sobic010G205300 Sobic010G205300 Sobic007G168600--Sobic010G205300 Sobic007G168600--Sobic003G124800 Sobic001G461900 Sobic001G461900 Sobic007G168600--Sobic001G461900 Sobic001G314500 Sobic001G314500 Sobic007G168600--Sobic001G314500 Sobic010G058500--Sobic001G051200 Sobic010G058500--Sobic007G186300 Sobic010G058500--Sobic003G007500 Sobic001G067900 Sobic001G067900 Sobic010G058500--Sobic001G067900 Sobic006G254700 Sobic006G254700 Sobic010G058500--Sobic006G254700 Sobic010G058500--Sobic003G261400 Sobic003G115800 Sobic003G115800 Sobic010G058500--Sobic003G115800 Sobic009G154800 Sobic009G154800 Sobic010G058500--Sobic009G154800 Sobic004G234900 Sobic004G234900 Sobic010G058500--Sobic004G234900 Sobic002G400000--Sobic007G168600 Sobic002G400000--Sobic003G077900 Sobic002G400000--Sobic009G198500 Sobic002G400000--Sobic004G130900 Sobic001G433400 Sobic001G433400 Sobic002G400000--Sobic001G433400 Sobic001G395400 Sobic001G395400 Sobic002G400000--Sobic001G395400 Sobic004G327300 Sobic004G327300 Sobic002G400000--Sobic004G327300 Sobic009G004600 Sobic009G004600 Sobic002G400000--Sobic009G004600 Sobic002G400000--Sobic010G000900 Sobic010G168600--Sobic010G083700 Sobic010G168600--Sobic001G078500 Sobic010G168600--Sobic009G246950 Sobic002G352700 Sobic002G352700 Sobic010G168600--Sobic002G352700 Sobic006G263900 Sobic006G263900 Sobic010G168600--Sobic006G263900 Sobic010G168600--Sobic003G007500 Sobic009G171700 Sobic009G171700 Sobic010G168600--Sobic009G171700 Sobic002G256300 Sobic002G256300 Sobic010G168600--Sobic002G256300 Sobic010G168600--Sobic004G104900
Octagon: transcription factors


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