Gene annotation
Transcriptome id Sobic.006G225600.1,Sobic.006G225600.2
Synonym Sb06g029460
Functional annotation protein phosphatase 2C, putative, expressed
UniProt C5YGK6 , A0A1Z5RGA4
Pfam PF00481
Panther DB PTHR13832 PTHR13832:SF345 PTHR13832 PTHR13832:SF314
NCBI CDD KOG0698; Serine/threonine protein phosphatase
KEGG Orthology K17506; PPM1L, protein phosphatase 1L
Gene Ontology GO:0003824; catalytic activity GO:0006470protein dephosphorylation GO:0004722protein serine/threonine phosphatase activity


Orthologs (automatic annotation)
TAIR AT1G34750 : Protein phosphatase 2C family protein
RAP-DB (Rice) LOC_Os04g37904.1 : protein phosphatase 2C, putative, expressed
MaizeGDB (Corn) Zm00025a057099
Brachypodium KQJ82909 , KQJ82907
Barley HORVU2Hr1G079200.4 , HORVU2Hr1G079200.5 , HORVU2Hr1G079200.2 , HORVU2Hr1G079200.3 , HORVU2Hr1G079200.1 , HORVU2Hr1G079240.2 , HORVU2Hr1G079240.3 , HORVU2Hr1G079240.1
Wheat TraesCS2A02G339900 , TraesCS2A02G339900 , TraesCS2D02G317400 , TraesCS2D02G317400 , TraesCS2D02G317400 , TraesCS2B02G337800 , TraesCS2B02G337800 , TraesCS2B02G337800
Populus -


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cDNA sequences
Sobic.006G225600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G234900 membrane-anchored ubiquitin-fold protein, putative, expressed -
2 Sobic.002G251700 no apical meristem protein, putative, expressed -
3 Sobic.001G162100 WRKY94, expressed -
4 Sobic.001G098200 magnesium-dependent phosphatase 1, putative, expressed K17619: magnesium-dependent phosphatase 1
5 Sobic.003G295400 MAC/Perforin domain containing protein, putative, expressed -
6 Sobic.002G122700 expressed protein -
7 Sobic.004G274400 GCN5-related N-acetyltransferase, putative, expressed -
8 Sobic.001G051200 vesicle-associated membrane protein, putative, expressed K08511: vesicle-associated membrane protein 72
K08515: vesicle-associated membrane protein 7
9 Sobic.001G434900 serine palmitoyltransferase 1, putative, expressed K00654: serine palmitoyltransferase
10 Sobic.009G193400 AGC_AGC_other_NDRh_TRCd.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed K08790: STK38, serine/threonine kinase 38
11 Sobic.009G219900 peptidyl-tRNA hydrolase, mitochondrial precursor protein, putative, expressed K01056: PTH1, pth, peptidyl-tRNA hydrolase, PTH1 family
12 Sobic.006G148200 glycosyl transferase 8 domain containing protein, putative, expressed -
13 Sobic.010G174500 protein kinase family protein, putative, expressed -
14 Sobic.001G283500 VHS and GAT domain containing protein, expressed -
15 Sobic.001G323000 UBX domain-containing protein, putative, expressed K18726: FAF2, FAS-associated factor 2
16 Sobic.009G059700 thioredoxin, putative, expressed K03671: thioredoxin 1
17 Sobic.003G007500 CK1_CaseinKinase_1.1 - CK1 includes the casein kinase 1 kinases, expressed -
18 Sobic.003G044200 C2 domain containing protein, putative, expressed -
19 Sobic.001G105500 heat shock protein DnaJ, putative, expressed -
20 Sobic.006G194500 expressed protein -


Gene co-expression network
sample Sobic006G225600 Sobic006G225600 Sobic004G234900 Sobic004G234900 Sobic006G225600--Sobic004G234900 Sobic002G251700 Sobic002G251700 Sobic006G225600--Sobic002G251700 Sobic001G162100 Sobic001G162100 Sobic006G225600--Sobic001G162100 Sobic001G098200 Sobic001G098200 Sobic006G225600--Sobic001G098200 Sobic003G295400 Sobic003G295400 Sobic006G225600--Sobic003G295400 Sobic002G122700 Sobic002G122700 Sobic006G225600--Sobic002G122700 Sobic004G274400 Sobic004G274400 Sobic006G225600--Sobic004G274400 Sobic001G051200 Sobic001G051200 Sobic006G225600--Sobic001G051200 Sobic001G434900 Sobic001G434900 Sobic006G225600--Sobic001G434900 Sobic004G234900--Sobic001G098200 Sobic004G234900--Sobic006G225600 Sobic004G234900--Sobic002G122700 Sobic004G234900--Sobic001G162100 Sobic004G234900--Sobic002G251700 Sobic010G174500 Sobic010G174500 Sobic004G234900--Sobic010G174500 Sobic006G254800 Sobic006G254800 Sobic004G234900--Sobic006G254800 Sobic001G180900 Sobic001G180900 Sobic004G234900--Sobic001G180900 Sobic010G000900 Sobic010G000900 Sobic004G234900--Sobic010G000900 Sobic002G251700--Sobic006G225600 Sobic002G251700--Sobic003G295400 Sobic002G251700--Sobic004G234900 Sobic002G251700--Sobic001G098200 Sobic010G009400 Sobic010G009400 Sobic002G251700--Sobic010G009400 Sobic003G077900 Sobic003G077900 Sobic002G251700--Sobic003G077900 Sobic003G217400 Sobic003G217400 Sobic002G251700--Sobic003G217400 Sobic007G007000 Sobic007G007000 Sobic002G251700--Sobic007G007000 Sobic002G251700--Sobic010G000900 Sobic001G162100--Sobic006G225600 Sobic001G162100--Sobic004G234900 Sobic009G059700 Sobic009G059700 Sobic001G162100--Sobic009G059700 Sobic008G016900 Sobic008G016900 Sobic001G162100--Sobic008G016900 Sobic010G062800 Sobic010G062800 Sobic001G162100--Sobic010G062800 Sobic001G162100--Sobic002G122700 Sobic001G162100--Sobic001G434900 Sobic001G162100--Sobic001G098200 Sobic009G219900 Sobic009G219900 Sobic001G162100--Sobic009G219900 Sobic001G098200--Sobic004G234900 Sobic001G098200--Sobic006G225600 Sobic004G253000 Sobic004G253000 Sobic001G098200--Sobic004G253000 Sobic001G098200--Sobic002G251700 Sobic010G090900 Sobic010G090900 Sobic001G098200--Sobic010G090900 Sobic003G050600 Sobic003G050600 Sobic001G098200--Sobic003G050600 Sobic004G301900 Sobic004G301900 Sobic001G098200--Sobic004G301900 Sobic001G098200--Sobic001G051200 Sobic003G044200 Sobic003G044200 Sobic001G098200--Sobic003G044200 Sobic003G007500 Sobic003G007500 Sobic003G295400--Sobic003G007500 Sobic003G295400--Sobic006G225600 Sobic010G253800 Sobic010G253800 Sobic003G295400--Sobic010G253800 Sobic003G295400--Sobic002G251700 Sobic001G078500 Sobic001G078500 Sobic003G295400--Sobic001G078500 Sobic003G295400--Sobic001G051200 Sobic009G193400 Sobic009G193400 Sobic003G295400--Sobic009G193400 Sobic010G168600 Sobic010G168600 Sobic003G295400--Sobic010G168600 Sobic009G171700 Sobic009G171700 Sobic003G295400--Sobic009G171700 Sobic002G122700--Sobic004G234900 Sobic002G122700--Sobic006G225600 Sobic002G122700--Sobic001G434900 Sobic010G101500 Sobic010G101500 Sobic002G122700--Sobic010G101500 Sobic001G220400 Sobic001G220400 Sobic002G122700--Sobic001G220400 Sobic001G329100 Sobic001G329100 Sobic002G122700--Sobic001G329100 Sobic002G122700--Sobic010G000900 Sobic010G188100 Sobic010G188100 Sobic002G122700--Sobic010G188100 Sobic003G248600 Sobic003G248600 Sobic002G122700--Sobic003G248600 Sobic006G148200 Sobic006G148200 Sobic004G274400--Sobic006G148200 Sobic001G323000 Sobic001G323000 Sobic004G274400--Sobic001G323000 Sobic004G274400--Sobic006G225600 Sobic003G002400 Sobic003G002400 Sobic004G274400--Sobic003G002400 Sobic009G219000 Sobic009G219000 Sobic004G274400--Sobic009G219000 Sobic002G131900 Sobic002G131900 Sobic004G274400--Sobic002G131900 Sobic003G312200 Sobic003G312200 Sobic004G274400--Sobic003G312200 Sobic001G206900 Sobic001G206900 Sobic004G274400--Sobic001G206900 Sobic004G274400--Sobic003G007500 Sobic003G015900 Sobic003G015900 Sobic001G051200--Sobic003G015900 Sobic001G051200--Sobic003G007500 Sobic003G261400 Sobic003G261400 Sobic001G051200--Sobic003G261400 Sobic001G047400 Sobic001G047400 Sobic001G051200--Sobic001G047400 Sobic001G051200--Sobic010G000900 Sobic007G168600 Sobic007G168600 Sobic001G051200--Sobic007G168600 Sobic010G058500 Sobic010G058500 Sobic001G051200--Sobic010G058500 Sobic002G400000 Sobic002G400000 Sobic001G051200--Sobic002G400000 Sobic001G051200--Sobic010G168600 Sobic001G434900--Sobic002G122700 Sobic004G350300 Sobic004G350300 Sobic001G434900--Sobic004G350300 Sobic001G434900--Sobic003G002400 Sobic003G367300 Sobic003G367300 Sobic001G434900--Sobic003G367300 Sobic001G434900--Sobic006G225600 Sobic005G176000 Sobic005G176000 Sobic001G434900--Sobic005G176000 Sobic001G434900--Sobic003G248600 Sobic001G434900--Sobic001G162100 Sobic001G434900--Sobic004G274400
Octagon: transcription factors


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