Gene annotation
Transcriptome id Sobic.009G059700.1
Synonym TH9, ATH9, TRXH9, Sb09g005030
Functional annotation thioredoxin, putative, expressed
UniProt C5Z121
Pfam PF00085
Panther DB PTHR10438 PTHR10438:SF240
NCBI CDD KOG0907; Thioredoxin
KEGG Orthology K03671; thioredoxin 1
Gene Ontology GO:0015035; protein disulfide oxidoreductase activity GO:0006662glycerol ether metabolic process


Orthologs (automatic annotation)
TAIR AT3G08710 : thioredoxin H-type 9
RAP-DB (Rice) LOC_Os01g07376.1 : thioredoxin, putative, expressed
MaizeGDB (Corn) Zm00025a042877
Brachypodium KQK07307
Barley HORVU1Hr1G024700.2 , HORVU1Hr1G024700.1 , HORVU1Hr1G024700.3 , HORVU1Hr1G024700.4
Wheat TraesCS1B02G132600
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.009G059700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G162100 WRKY94, expressed -
2 Sobic.008G016900 glucosamine--fructose-6-phosphate aminotransferase 1, putative, expressed K00820: glmS, glutamine---fructose-6-phosphate transaminase (isomerizing)
3 Sobic.001G283500 VHS and GAT domain containing protein, expressed -
4 Sobic.006G225600 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
5 Sobic.002G330300 chitin-inducible gibberellin-responsive protein, putative, expressed -
6 Sobic.002G368400 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed K17795: mitochondrial import inner membrane translocase subunit TIM17
7 Sobic.002G119800 arginyl-tRNA synthetase, putative, expressed -
8 Sobic.009G134600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@gibberellin receptor GID1L2, putative, expressed K14493: gibberellin receptor GID1
9 Sobic.010G062800 transporter, major facilitator family, putative, expressed K13783: MFS transporter, OPA family, solute carrier family 37 (glycerol-3-phosphate transporter), member 1/2
10 Sobic.004G280800 Tannin1 encodes a WD40 protein homologous to the Arabidopsis proanthocyanidin regulator transparent testa glabra1 (TTG1). (PubmedID : 25272193)@WD40 protein(PubMedID : 22699509)@Transcription factor for tannin accumulation in seed(PubMedID : 22699509)@WD domain, G-beta repeat domain containing protein, expressed K11805: DCAF7, DDB1- and CUL4-associated factor 7
11 Sobic.007G011000 synaptobrevin-related family protein, putative, expressed -
12 Sobic.004G145200 membrane attack complex component/perforin/complement C9, putative, expressed -
13 Sobic.004G234900 membrane-anchored ubiquitin-fold protein, putative, expressed -
14 Sobic.010G101500 skp1 family, tetramerisation domain containing protein, expressed K03872: ELOC, elongin-C
15 Sobic.004G031600 cyclin-T1-1, putative, expressed K15188: cyclin T
16 Sobic.001G074200 LRR receptor-like protein kinase, putative, expressed -
17 Sobic.001G314700 uncharacterized Cys-rich domain containing protein, putative, expressed -
18 Sobic.002G122700 expressed protein -
19 Sobic.006G218700 tyrosine protein kinase domain containing protein, putative, expressed -
20 Sobic.001G434900 serine palmitoyltransferase 1, putative, expressed K00654: serine palmitoyltransferase


Gene co-expression network
sample Sobic009G059700 Sobic009G059700 Sobic001G162100 Sobic001G162100 Sobic009G059700--Sobic001G162100 Sobic008G016900 Sobic008G016900 Sobic009G059700--Sobic008G016900 Sobic001G283500 Sobic001G283500 Sobic009G059700--Sobic001G283500 Sobic006G225600 Sobic006G225600 Sobic009G059700--Sobic006G225600 Sobic002G330300 Sobic002G330300 Sobic009G059700--Sobic002G330300 Sobic002G368400 Sobic002G368400 Sobic009G059700--Sobic002G368400 Sobic002G119800 Sobic002G119800 Sobic009G059700--Sobic002G119800 Sobic009G134600 Sobic009G134600 Sobic009G059700--Sobic009G134600 Sobic010G062800 Sobic010G062800 Sobic009G059700--Sobic010G062800 Sobic001G162100--Sobic006G225600 Sobic004G234900 Sobic004G234900 Sobic001G162100--Sobic004G234900 Sobic001G162100--Sobic009G059700 Sobic001G162100--Sobic008G016900 Sobic001G162100--Sobic010G062800 Sobic002G122700 Sobic002G122700 Sobic001G162100--Sobic002G122700 Sobic001G434900 Sobic001G434900 Sobic001G162100--Sobic001G434900 Sobic001G098200 Sobic001G098200 Sobic001G162100--Sobic001G098200 Sobic009G219900 Sobic009G219900 Sobic001G162100--Sobic009G219900 Sobic008G016900--Sobic002G330300 Sobic002G379400 Sobic002G379400 Sobic008G016900--Sobic002G379400 Sobic008G016900--Sobic010G062800 Sobic008G016900--Sobic001G283500 Sobic007G188100 Sobic007G188100 Sobic008G016900--Sobic007G188100 Sobic004G145200 Sobic004G145200 Sobic008G016900--Sobic004G145200 Sobic008G016900--Sobic001G162100 Sobic008G016900--Sobic009G059700 Sobic002G343500 Sobic002G343500 Sobic008G016900--Sobic002G343500 Sobic001G283500--Sobic008G016900 Sobic007G195701 Sobic007G195701 Sobic001G283500--Sobic007G195701 Sobic001G403700 Sobic001G403700 Sobic001G283500--Sobic001G403700 Sobic003G115800 Sobic003G115800 Sobic001G283500--Sobic003G115800 Sobic009G160200 Sobic009G160200 Sobic001G283500--Sobic009G160200 Sobic010G204300 Sobic010G204300 Sobic001G283500--Sobic010G204300 Sobic002G296300 Sobic002G296300 Sobic001G283500--Sobic002G296300 Sobic001G283500--Sobic010G062800 Sobic010G188100 Sobic010G188100 Sobic001G283500--Sobic010G188100 Sobic006G225600--Sobic004G234900 Sobic002G251700 Sobic002G251700 Sobic006G225600--Sobic002G251700 Sobic006G225600--Sobic001G162100 Sobic006G225600--Sobic001G098200 Sobic003G295400 Sobic003G295400 Sobic006G225600--Sobic003G295400 Sobic006G225600--Sobic002G122700 Sobic004G274400 Sobic004G274400 Sobic006G225600--Sobic004G274400 Sobic001G051200 Sobic001G051200 Sobic006G225600--Sobic001G051200 Sobic006G225600--Sobic001G434900 Sobic002G330300--Sobic008G016900 Sobic002G330300--Sobic002G379400 Sobic010G052800 Sobic010G052800 Sobic002G330300--Sobic010G052800 Sobic010G228000 Sobic010G228000 Sobic002G330300--Sobic010G228000 Sobic007G011000 Sobic007G011000 Sobic002G330300--Sobic007G011000 Sobic004G025000 Sobic004G025000 Sobic002G330300--Sobic004G025000 Sobic002G118600 Sobic002G118600 Sobic002G330300--Sobic002G118600 Sobic006G263100 Sobic006G263100 Sobic002G330300--Sobic006G263100 Sobic002G330300--Sobic007G188100 Sobic003G332401 Sobic003G332401 Sobic002G368400--Sobic003G332401 Sobic003G116600 Sobic003G116600 Sobic002G368400--Sobic003G116600 Sobic009G199700 Sobic009G199700 Sobic002G368400--Sobic009G199700 Sobic002G368400--Sobic009G059700 Sobic001G367000 Sobic001G367000 Sobic002G368400--Sobic001G367000 Sobic001G526100 Sobic001G526100 Sobic002G368400--Sobic001G526100 Sobic002G368400--Sobic001G283500 Sobic002G368400--Sobic007G195701 Sobic001G309500 Sobic001G309500 Sobic002G368400--Sobic001G309500 Sobic004G332000 Sobic004G332000 Sobic002G119800--Sobic004G332000 Sobic002G119800--Sobic009G059700 Sobic006G213601 Sobic006G213601 Sobic002G119800--Sobic006G213601 Sobic002G119800--Sobic008G016900 Sobic002G119800--Sobic001G162100 Sobic009G230700 Sobic009G230700 Sobic002G119800--Sobic009G230700 Sobic002G119800--Sobic009G134600 Sobic002G119800--Sobic007G011000 Sobic002G119800--Sobic004G145200 Sobic003G119800 Sobic003G119800 Sobic009G134600--Sobic003G119800 Sobic006G218700 Sobic006G218700 Sobic009G134600--Sobic006G218700 Sobic009G134600--Sobic009G230700 Sobic007G178200 Sobic007G178200 Sobic009G134600--Sobic007G178200 Sobic009G134600--Sobic009G059700 Sobic003G056500 Sobic003G056500 Sobic009G134600--Sobic003G056500 Sobic009G134600--Sobic002G330300 Sobic001G290200 Sobic001G290200 Sobic009G134600--Sobic001G290200 Sobic004G031600 Sobic004G031600 Sobic009G134600--Sobic004G031600 Sobic010G062800--Sobic008G016900 Sobic010G062800--Sobic007G188100 Sobic010G062800--Sobic001G403700 Sobic006G192500 Sobic006G192500 Sobic010G062800--Sobic006G192500 Sobic010G062800--Sobic010G228000 Sobic010G062800--Sobic001G283500 Sobic002G214900 Sobic002G214900 Sobic010G062800--Sobic002G214900 Sobic010G062800--Sobic004G145200 Sobic006G182100 Sobic006G182100 Sobic010G062800--Sobic006G182100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.