Gene annotation
| Transcriptome id | Sobic.004G280800.1 |
|---|---|
| Synonym | URM23, Tan1;Tannin1, TTG, Sb04g031730, WD40, TTG1, ATTTG1, Tan1, Tannin1;Tannnin1 |
| Functional annotation | Tannin1 encodes a WD40 protein homologous to the Arabidopsis proanthocyanidin regulator transparent testa glabra1 (TTG1). (PubmedID : 25272193) WD40 protein (PubMedID : 22699509) Transcription factor for tannin accumulation in seed (PubMedID : 22699509) WD domain, G-beta repeat domain containing protein, expressed |
| UniProt | I6UTH7 , C5Y0X7 |
| Pfam | PF00400 |
| Panther DB | PTHR19919 PTHR19919:SF2 |
| NCBI CDD | KOG0290; Conserved WD40 repeat-containing protein AN11 |
| KEGG Orthology | K11805; DCAF7, DDB1- and CUL4-associated factor 7 |
| Gene Ontology | GO:0005515; protein binding GO:0007275multicellular organism development |
Orthologs (automatic annotation)
| TAIR | AT5G24520 : Transducin/WD40 repeat-like superfamily protein |
|---|---|
| RAP-DB (Rice) | LOC_Os02g45810.1 : WD domain, G-beta repeat domain containing protein, expressed |
| MaizeGDB (Corn) | Zm00025a021531 |
| Brachypodium | KQK00793 , KQK00792 |
| Barley | HORVU0Hr1G016450.1 |
| Wheat | - |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.010G228000 | Protein kinase domain containing protein, expressed | - |
| 2 | Sobic.006G263100 | expressed protein | - |
| 3 | Sobic.002G118600 | SNARE domain containing protein, putative, expressed | K18211: synaptosomal-associated protein 25 |
| 4 | Sobic.001G290400 | no apical meristem protein, putative, expressed | - |
| 5 | Sobic.003G338900 | expressed protein | - |
| 6 | Sobic.004G025000 | CAMK_CAMK_like.12 - CAMK includes calcium/calmodulin depedent protein kinases, expressed | K13412: calcium-dependent protein kinase |
| 7 | Sobic.007G011000 | synaptobrevin-related family protein, putative, expressed | - |
| 8 | Sobic.004G053200 | Cupin domain containing protein, expressed | - |
| 9 | Sobic.001G189700 | DNAJ heat shock N-terminal domain-containing protein, putative, expressed | - |
| 10 | Sobic.002G379400 | CAMK_CAMK_like.7 - CAMK includes calcium/calmodulin depedent protein kinases, expressed | K14498: serine/threonine-protein kinase SRK2 |
| 11 | Sobic.001G403600 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@DUF538 domain containing protein, putative, expressed | - |
| 12 | Sobic.002G330300 | chitin-inducible gibberellin-responsive protein, putative, expressed | - |
| 13 | Sobic.006G228300 | ethylene-responsive protein related, putative, expressed | - |
| 14 | Sobic.006G179500 | protein kinase APK1B, chloroplast precursor, putative, expressed | - |
| 15 | Sobic.004G325700 | CYPRO4, putative, expressed | - |
| 16 | Sobic.002G294700 | Trihelix Family(PubMedID : 24864043)@transcription factor like protein, putative, expressed | - |
| 17 | Sobic.009G184400 | Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed | - |
| 18 | Sobic.003G429300 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@NADPH quinone oxidoreductase, putative, expressed | - |
| 19 | Sobic.004G311500 | "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR12 - Auxin-responsive SAUR gene family member, expressed | K14488: SAUR family protein |
| 20 | Sobic.010G052800 | BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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