Gene annotation
Transcriptome id Sobic.004G025000.2,Sobic.004G025000.1,Sobic.004G025000.3
Synonym CPK16, Sb04g002220
Functional annotation CAMK_CAMK_like.12 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
UniProt A0A194YME7 , A0A194YNE8 , A0A1Z5RL20
Pfam PF14531 PF13499 PF13499 PF14531 PF13202 PF13499 PF14531
Panther DB PTHR24349:SF137 PTHR24349 PTHR24349 PTHR24349:SF137
NCBI CDD KOG0032; Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily
KEGG Orthology K13412; calcium-dependent protein kinase
Gene Ontology GO:0005509; calcium ion binding


Orthologs (automatic annotation)
TAIR AT2G17890 : calcium-dependent protein kinase 16
RAP-DB (Rice) LOC_Os02g03410.2,LOC_Os02g03410.1 : CAMK_CAMK_like.12 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
MaizeGDB (Corn) Zm00025a018805
Brachypodium KQJ93074 , KQJ93073
Barley HORVU6Hr1G014700.8 , HORVU6Hr1G014700.6 , HORVU6Hr1G014700.7 , HORVU6Hr1G014700.4 , HORVU6Hr1G014700.5 , HORVU6Hr1G014700.2 , HORVU6Hr1G014700.3 , HORVU6Hr1G014700.1 , HORVU4Hr1G078080.2 , HORVU4Hr1G078080.1 , HORVU4Hr1G078080.3
Wheat TraesCS6A02G089400 , TraesCS6A02G089400 , TraesCSU02G016900 , TraesCSU02G016900 , TraesCS6B02G111800
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G081600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed -
2 Sobic.002G379400 CAMK_CAMK_like.7 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K14498: serine/threonine-protein kinase SRK2
3 Sobic.006G095600 lipoxygenase (LOX) that catalyzes the first committed step of JA biosynthesis(PubMedID : 31597271)@lipoxygenase protein, putative, expressed K00454: lipoxygenase
4 Sobic.002G344700 remorin, putative, expressed -
5 Sobic.002G330300 chitin-inducible gibberellin-responsive protein, putative, expressed -
6 Sobic.001G476400 - -
7 Sobic.001G063600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CAMK_CAMK_like.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
8 Sobic.001G314700 uncharacterized Cys-rich domain containing protein, putative, expressed -
9 Sobic.010G076700 expressed protein -
10 Sobic.001G051600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ATPase, putative, expressed -
11 Sobic.004G283300 AP2 domain containing protein, expressed -
12 Sobic.004G280800 Tannin1 encodes a WD40 protein homologous to the Arabidopsis proanthocyanidin regulator transparent testa glabra1 (TTG1). (PubmedID : 25272193)@WD40 protein(PubMedID : 22699509)@Transcription factor for tannin accumulation in seed(PubMedID : 22699509)@WD domain, G-beta repeat domain containing protein, expressed K11805: DCAF7, DDB1- and CUL4-associated factor 7
13 Sobic.001G473900 Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor, putative, expressed K09286: EREBP-like factor
14 Sobic.002G203000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.34 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
15 Sobic.003G338900 expressed protein -
16 Sobic.001G489600 expressed protein -
17 Sobic.007G011000 synaptobrevin-related family protein, putative, expressed -
18 Sobic.005G231700 ZOS7-01 - C2H2 zinc finger protein, expressed -
19 Sobic.004G053200 Cupin domain containing protein, expressed -
20 Sobic.001G436000 expressed protein -


Gene co-expression network
sample Sobic004G025000 Sobic004G025000 Sobic001G081600 Sobic001G081600 Sobic004G025000--Sobic001G081600 Sobic002G379400 Sobic002G379400 Sobic004G025000--Sobic002G379400 Sobic006G095600 Sobic006G095600 Sobic004G025000--Sobic006G095600 Sobic002G344700 Sobic002G344700 Sobic004G025000--Sobic002G344700 Sobic002G330300 Sobic002G330300 Sobic004G025000--Sobic002G330300 Sobic001G476400 Sobic001G476400 Sobic004G025000--Sobic001G476400 Sobic001G063600 Sobic001G063600 Sobic004G025000--Sobic001G063600 Sobic001G314700 Sobic001G314700 Sobic004G025000--Sobic001G314700 Sobic010G076700 Sobic010G076700 Sobic004G025000--Sobic010G076700 Sobic001G462800 Sobic001G462800 Sobic001G081600--Sobic001G462800 Sobic002G217100 Sobic002G217100 Sobic001G081600--Sobic002G217100 Sobic006G210300 Sobic006G210300 Sobic001G081600--Sobic006G210300 Sobic004G283300 Sobic004G283300 Sobic001G081600--Sobic004G283300 Sobic002G197600 Sobic002G197600 Sobic001G081600--Sobic002G197600 Sobic004G281200 Sobic004G281200 Sobic001G081600--Sobic004G281200 Sobic001G081600--Sobic002G344700 Sobic001G081600--Sobic004G025000 Sobic001G081600--Sobic001G476400 Sobic002G379400--Sobic004G025000 Sobic002G379400--Sobic002G330300 Sobic003G338900 Sobic003G338900 Sobic002G379400--Sobic003G338900 Sobic008G016900 Sobic008G016900 Sobic002G379400--Sobic008G016900 Sobic010G228000 Sobic010G228000 Sobic002G379400--Sobic010G228000 Sobic002G118600 Sobic002G118600 Sobic002G379400--Sobic002G118600 Sobic006G263100 Sobic006G263100 Sobic002G379400--Sobic006G263100 Sobic001G436000 Sobic001G436000 Sobic002G379400--Sobic001G436000 Sobic002G294700 Sobic002G294700 Sobic002G379400--Sobic002G294700 Sobic001G489600 Sobic001G489600 Sobic006G095600--Sobic001G489600 Sobic002G203000 Sobic002G203000 Sobic006G095600--Sobic002G203000 Sobic001G051600 Sobic001G051600 Sobic006G095600--Sobic001G051600 Sobic001G077700 Sobic001G077700 Sobic006G095600--Sobic001G077700 Sobic009G071800 Sobic009G071800 Sobic006G095600--Sobic009G071800 Sobic007G057100 Sobic007G057100 Sobic006G095600--Sobic007G057100 Sobic004G084100 Sobic004G084100 Sobic006G095600--Sobic004G084100 Sobic001G473900 Sobic001G473900 Sobic006G095600--Sobic001G473900 Sobic006G095600--Sobic001G476400 Sobic002G344700--Sobic004G283300 Sobic002G344700--Sobic001G081600 Sobic002G344700--Sobic001G462800 Sobic006G032200 Sobic006G032200 Sobic002G344700--Sobic006G032200 Sobic002G344700--Sobic004G025000 Sobic009G170100 Sobic009G170100 Sobic002G344700--Sobic009G170100 Sobic002G344700--Sobic004G281200 Sobic002G344700--Sobic006G210300 Sobic002G344700--Sobic002G217100 Sobic002G330300--Sobic008G016900 Sobic002G330300--Sobic002G379400 Sobic010G052800 Sobic010G052800 Sobic002G330300--Sobic010G052800 Sobic002G330300--Sobic010G228000 Sobic007G011000 Sobic007G011000 Sobic002G330300--Sobic007G011000 Sobic002G330300--Sobic004G025000 Sobic002G330300--Sobic002G118600 Sobic002G330300--Sobic006G263100 Sobic007G188100 Sobic007G188100 Sobic002G330300--Sobic007G188100 Sobic001G476400--Sobic001G063600 Sobic001G476400--Sobic001G051600 Sobic001G476400--Sobic001G473900 Sobic010G076600 Sobic010G076600 Sobic001G476400--Sobic010G076600 Sobic001G476400--Sobic001G081600 Sobic010G080400 Sobic010G080400 Sobic001G476400--Sobic010G080400 Sobic001G476400--Sobic006G095600 Sobic001G476400--Sobic004G283300 Sobic001G476400--Sobic001G489600 Sobic001G063600--Sobic001G476400 Sobic005G231700 Sobic005G231700 Sobic001G063600--Sobic005G231700 Sobic001G063600--Sobic010G080400 Sobic008G159100 Sobic008G159100 Sobic001G063600--Sobic008G159100 Sobic001G063600--Sobic009G170100 Sobic003G032900 Sobic003G032900 Sobic001G063600--Sobic003G032900 Sobic002G068800 Sobic002G068800 Sobic001G063600--Sobic002G068800 Sobic001G063600--Sobic001G081600 Sobic001G063600--Sobic004G283300 Sobic007G145700 Sobic007G145700 Sobic001G314700--Sobic007G145700 Sobic001G314700--Sobic004G025000 Sobic001G314700--Sobic001G081600 Sobic006G146500 Sobic006G146500 Sobic001G314700--Sobic006G146500 Sobic001G314700--Sobic001G462800 Sobic003G341100 Sobic003G341100 Sobic001G314700--Sobic003G341100 Sobic002G294600 Sobic002G294600 Sobic001G314700--Sobic002G294600 Sobic003G352400 Sobic003G352400 Sobic001G314700--Sobic003G352400 Sobic001G314700--Sobic002G118600 Sobic010G076700--Sobic009G071800 Sobic010G076700--Sobic002G203000 Sobic009G231400 Sobic009G231400 Sobic010G076700--Sobic009G231400 Sobic010G076700--Sobic006G095600 Sobic010G076700--Sobic001G077700 Sobic010G076700--Sobic001G476400 Sobic009G163900 Sobic009G163900 Sobic010G076700--Sobic009G163900 Sobic010G076700--Sobic004G283300 Sobic010G076700--Sobic004G025000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.