Gene annotation
Transcriptome id Sobic.002G330300.1
Synonym Sb02g035680, PAT1
Functional annotation chitin-inducible gibberellin-responsive protein, putative, expressed
UniProt C5XAU2
Pfam PF03514
Panther DB PTHR31636 PTHR31636:SF18
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G48150 : GRAS family transcription factor
RAP-DB (Rice) LOC_Os07g36170.2 : chitin-inducible gibberellin-responsive protein, putative, expressed
MaizeGDB (Corn) Zm00025a014858
Brachypodium KQK15859 , KQK15860
Barley HORVU2Hr1G043780.1
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G016900 glucosamine--fructose-6-phosphate aminotransferase 1, putative, expressed K00820: glmS, glutamine---fructose-6-phosphate transaminase (isomerizing)
2 Sobic.002G379400 CAMK_CAMK_like.7 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K14498: serine/threonine-protein kinase SRK2
3 Sobic.010G052800 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed -
4 Sobic.010G228000 Protein kinase domain containing protein, expressed -
5 Sobic.007G011000 synaptobrevin-related family protein, putative, expressed -
6 Sobic.004G025000 CAMK_CAMK_like.12 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
7 Sobic.002G118600 SNARE domain containing protein, putative, expressed K18211: synaptosomal-associated protein 25
8 Sobic.006G263100 expressed protein -
9 Sobic.007G188100 Candidate orthologue to the wheat Pm40 gene(PubMedID : 27755575)@protein kinase domain containing protein, expressed K13429: chitin elicitor receptor kinase 1
10 Sobic.002G354900 "Belonging to the Sdw3 locus, Sbi_sdw3"(PubMedID : 20464438)@gibberellin response modulator protein, putative, expressed -
11 Sobic.010G246000 zinc finger, C3HC4 type domain containing protein, expressed -
12 Sobic.004G280800 Tannin1 encodes a WD40 protein homologous to the Arabidopsis proanthocyanidin regulator transparent testa glabra1 (TTG1). (PubmedID : 25272193)@WD40 protein(PubMedID : 22699509)@Transcription factor for tannin accumulation in seed(PubMedID : 22699509)@WD domain, G-beta repeat domain containing protein, expressed K11805: DCAF7, DDB1- and CUL4-associated factor 7
13 Sobic.007G169200 EF hand family protein, putative, expressed K13448: calcium-binding protein CML
14 Sobic.002G276400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tyrosine protein kinase domain containing protein, putative, expressed -
15 Sobic.002G374100 tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@zinc-finger protein, putative, expressed K13464: jasmonate ZIM domain-containing protein
16 Sobic.001G525400 receptor-like protein kinase At3g46290 precursor, putative, expressed -
17 Sobic.004G031600 cyclin-T1-1, putative, expressed K15188: cyclin T
18 Sobic.002G294700 Trihelix Family(PubMedID : 24864043)@transcription factor like protein, putative, expressed -
19 Sobic.001G147200 DNA-binding protein-like, putative, expressed K10624: E3 ubiquitin-protein ligase RBBP6
20 Sobic.003G338900 expressed protein -


Gene co-expression network
sample Sobic002G330300 Sobic002G330300 Sobic008G016900 Sobic008G016900 Sobic002G330300--Sobic008G016900 Sobic002G379400 Sobic002G379400 Sobic002G330300--Sobic002G379400 Sobic010G052800 Sobic010G052800 Sobic002G330300--Sobic010G052800 Sobic010G228000 Sobic010G228000 Sobic002G330300--Sobic010G228000 Sobic007G011000 Sobic007G011000 Sobic002G330300--Sobic007G011000 Sobic004G025000 Sobic004G025000 Sobic002G330300--Sobic004G025000 Sobic002G118600 Sobic002G118600 Sobic002G330300--Sobic002G118600 Sobic006G263100 Sobic006G263100 Sobic002G330300--Sobic006G263100 Sobic007G188100 Sobic007G188100 Sobic002G330300--Sobic007G188100 Sobic008G016900--Sobic002G330300 Sobic008G016900--Sobic002G379400 Sobic010G062800 Sobic010G062800 Sobic008G016900--Sobic010G062800 Sobic001G283500 Sobic001G283500 Sobic008G016900--Sobic001G283500 Sobic008G016900--Sobic007G188100 Sobic004G145200 Sobic004G145200 Sobic008G016900--Sobic004G145200 Sobic001G162100 Sobic001G162100 Sobic008G016900--Sobic001G162100 Sobic009G059700 Sobic009G059700 Sobic008G016900--Sobic009G059700 Sobic002G343500 Sobic002G343500 Sobic008G016900--Sobic002G343500 Sobic002G379400--Sobic004G025000 Sobic002G379400--Sobic002G330300 Sobic003G338900 Sobic003G338900 Sobic002G379400--Sobic003G338900 Sobic002G379400--Sobic008G016900 Sobic002G379400--Sobic010G228000 Sobic002G379400--Sobic002G118600 Sobic002G379400--Sobic006G263100 Sobic001G436000 Sobic001G436000 Sobic002G379400--Sobic001G436000 Sobic002G294700 Sobic002G294700 Sobic002G379400--Sobic002G294700 Sobic010G052800--Sobic002G330300 Sobic002G413000 Sobic002G413000 Sobic010G052800--Sobic002G413000 Sobic002G293300 Sobic002G293300 Sobic010G052800--Sobic002G293300 Sobic001G482100 Sobic001G482100 Sobic010G052800--Sobic001G482100 Sobic004G031600 Sobic004G031600 Sobic010G052800--Sobic004G031600 Sobic010G052800--Sobic006G263100 Sobic010G052800--Sobic002G379400 Sobic004G280800 Sobic004G280800 Sobic010G052800--Sobic004G280800 Sobic007G059900 Sobic007G059900 Sobic010G052800--Sobic007G059900 Sobic002G374100 Sobic002G374100 Sobic010G228000--Sobic002G374100 Sobic010G228000--Sobic002G118600 Sobic010G228000--Sobic007G188100 Sobic010G228000--Sobic002G294700 Sobic010G228000--Sobic002G330300 Sobic010G228000--Sobic004G280800 Sobic010G246000 Sobic010G246000 Sobic010G228000--Sobic010G246000 Sobic010G228000--Sobic002G379400 Sobic001G290400 Sobic001G290400 Sobic010G228000--Sobic001G290400 Sobic007G011000--Sobic002G118600 Sobic007G011000--Sobic002G330300 Sobic007G011000--Sobic010G228000 Sobic007G212200 Sobic007G212200 Sobic007G011000--Sobic007G212200 Sobic007G011000--Sobic004G280800 Sobic003G425200 Sobic003G425200 Sobic007G011000--Sobic003G425200 Sobic002G354900 Sobic002G354900 Sobic007G011000--Sobic002G354900 Sobic010G041700 Sobic010G041700 Sobic007G011000--Sobic010G041700 Sobic007G011000--Sobic004G025000 Sobic001G081600 Sobic001G081600 Sobic004G025000--Sobic001G081600 Sobic004G025000--Sobic002G379400 Sobic006G095600 Sobic006G095600 Sobic004G025000--Sobic006G095600 Sobic002G344700 Sobic002G344700 Sobic004G025000--Sobic002G344700 Sobic004G025000--Sobic002G330300 Sobic001G476400 Sobic001G476400 Sobic004G025000--Sobic001G476400 Sobic001G063600 Sobic001G063600 Sobic004G025000--Sobic001G063600 Sobic001G314700 Sobic001G314700 Sobic004G025000--Sobic001G314700 Sobic010G076700 Sobic010G076700 Sobic004G025000--Sobic010G076700 Sobic001G147200 Sobic001G147200 Sobic002G118600--Sobic001G147200 Sobic001G341600 Sobic001G341600 Sobic002G118600--Sobic001G341600 Sobic003G341100 Sobic003G341100 Sobic002G118600--Sobic003G341100 Sobic002G118600--Sobic010G228000 Sobic002G118600--Sobic002G374100 Sobic002G118600--Sobic001G290400 Sobic002G118600--Sobic007G011000 Sobic001G538866 Sobic001G538866 Sobic002G118600--Sobic001G538866 Sobic006G228300 Sobic006G228300 Sobic002G118600--Sobic006G228300 Sobic006G263100--Sobic004G280800 Sobic006G263100--Sobic010G246000 Sobic006G263100--Sobic001G290400 Sobic006G263100--Sobic002G379400 Sobic006G263100--Sobic002G330300 Sobic006G263100--Sobic001G147200 Sobic006G263100--Sobic002G294700 Sobic006G263100--Sobic010G228000 Sobic001G409900 Sobic001G409900 Sobic006G263100--Sobic001G409900 Sobic007G188100--Sobic010G228000 Sobic002G362900 Sobic002G362900 Sobic007G188100--Sobic002G362900 Sobic002G353400 Sobic002G353400 Sobic007G188100--Sobic002G353400 Sobic007G188100--Sobic002G374100 Sobic004G259500 Sobic004G259500 Sobic007G188100--Sobic004G259500 Sobic007G188100--Sobic008G016900 Sobic007G188100--Sobic002G330300 Sobic007G188100--Sobic010G062800 Sobic007G188100--Sobic002G118600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.