Gene annotation
| Transcriptome id | Sobic.010G246000.5,Sobic.010G246000.4,Sobic.010G246000.2,Sobic.010G246000.3 |
|---|---|
| Synonym | Sb10g028510 |
| Functional annotation | zinc finger, C3HC4 type domain containing protein, expressed |
| UniProt | A0A1W0VUN5 , C5Z8S8 |
| Pfam | PF13639 |
| Panther DB | PTHR22937 PTHR22937:SF60 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | GO:0008270; zinc ion binding GO:0005515protein binding |
Orthologs (automatic annotation)
| TAIR | AT5G10650 : RING/U-box superfamily protein |
|---|---|
| RAP-DB (Rice) | LOC_Os06g48040.1 : zinc finger, C3HC4 type domain containing protein, expressed |
| MaizeGDB (Corn) | Zm00025a018300 |
| Brachypodium | - |
| Barley | - |
| Wheat | - |
| Populus | PNS91964 , PNS91965 |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.002G294700 | Trihelix Family(PubMedID : 24864043)@transcription factor like protein, putative, expressed | - |
| 2 | Sobic.002G374100 | tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@zinc-finger protein, putative, expressed | K13464: jasmonate ZIM domain-containing protein |
| 3 | Sobic.003G019200 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein | - |
| 4 | Sobic.001G147200 | DNA-binding protein-like, putative, expressed | K10624: E3 ubiquitin-protein ligase RBBP6 |
| 5 | Sobic.010G245800 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@peroxidase precursor, putative, expressed | K00430: peroxidase |
| 6 | Sobic.008G177800 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@2-aminoethanethiol dioxygenase, putative, expressed | K10712: cysteamine dioxygenase |
| 7 | Sobic.002G354900 | "Belonging to the Sdw3 locus, Sbi_sdw3"(PubMedID : 20464438)@gibberellin response modulator protein, putative, expressed | - |
| 8 | Sobic.010G234600 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@wound induced protein, putative, expressed | - |
| 9 | Sobic.004G036600 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@activator of 90 kDa heat shock protein ATPase homolog, putative, expressed | - |
| 10 | Sobic.010G220200 | haloacid dehalogenase-like hydrolase domain-containing protein 3, putative, expressed | - |
| 11 | Sobic.006G263100 | expressed protein | - |
| 12 | Sobic.010G228000 | Protein kinase domain containing protein, expressed | - |
| 13 | Sobic.001G538866 | - | - |
| 14 | Sobic.009G255500 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@2-aminoethanethiol dioxygenase, putative, expressed | K10712: cysteamine dioxygenase |
| 15 | Sobic.009G129000 | E3 ubiquitin-protein ligase MGRN1, putative, expressed | - |
| 16 | Sobic.005G010200 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein | - |
| 17 | Sobic.006G231100 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@wound induced protein, putative, expressed | - |
| 18 | Sobic.009G071800 | 6-phosphofructokinase, putative, expressed | K00850: pfkA, 6-phosphofructokinase 1 |
| 19 | Sobic.010G200700 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein | - |
| 20 | Sobic.001G077700 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein | - |
Gene co-expression network
Octagon: transcription factors
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