Gene annotation
| Transcriptome id | Sobic.002G354900.1 |
|---|---|
| Synonym | SCL5, GA-responsive transcription factor, Sb02g037650 |
| Functional annotation | "Belonging to the Sdw3 locus, Sbi_sdw3" (PubMedID : 20464438) gibberellin response modulator protein, putative, expressed |
| UniProt | C5XCH4 |
| Pfam | PF03514 |
| Panther DB | PTHR31636 PTHR31636:SF31 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT1G50600 : scarecrow-like 5 |
|---|---|
| RAP-DB (Rice) | LOC_Os07g39470.1 : gibberellin response modulator protein, putative, expressed |
| MaizeGDB (Corn) | Zm00025a048534 , Zm00025a015033 |
| Brachypodium | KQK15509 |
| Barley | HORVU2Hr1G036280.3 , HORVU2Hr1G036280.2 , HORVU2Hr1G036280.1 , HORVU2Hr1G036280.4 |
| Wheat | - |
| Populus | - |
JBrowse
| Sobic.002G354900 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.002G294700 | Trihelix Family(PubMedID : 24864043)@transcription factor like protein, putative, expressed | - |
| 2 | Sobic.002G405600 | early response to dehydration 15, putative, expressed | - |
| 3 | Sobic.002G374100 | tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@zinc-finger protein, putative, expressed | K13464: jasmonate ZIM domain-containing protein |
| 4 | Sobic.003G324400 | Not investigated(PubMedID : 23766026)@Contribute to rice salt tolerance under a salt inducible abscisic acid 2 (ABA2) promoter(PubMedID : 28393269)@AP2 domain containing protein, expressed | - |
| 5 | Sobic.002G245800 | AN1-like zinc finger domain containing protein, expressed | - |
| 6 | Sobic.010G246000 | zinc finger, C3HC4 type domain containing protein, expressed | - |
| 7 | Sobic.009G129000 | E3 ubiquitin-protein ligase MGRN1, putative, expressed | - |
| 8 | Sobic.001G538866 | - | - |
| 9 | Sobic.009G217600 | STE_MEKK_ste11_MAP3K.19 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed | - |
| 10 | Sobic.006G231100 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@wound induced protein, putative, expressed | - |
| 11 | Sobic.004G280900 | zinc finger, C3HC4 type domain containing protein, expressed | - |
| 12 | Sobic.008G177800 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@2-aminoethanethiol dioxygenase, putative, expressed | K10712: cysteamine dioxygenase |
| 13 | Sobic.001G077400 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed | K01723: hydroperoxide dehydratase |
| 14 | Sobic.004G286600 | Protecting the plants under varied stress situations(PubMedID : 26536883)@dehydrin, putative, expressed | - |
| 15 | Sobic.001G077700 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein | - |
| 16 | Sobic.006G089300 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peptide transporter PTR2, putative, expressed | - |
| 17 | Sobic.001G095300 | prenylated rab acceptor, putative, expressed | - |
| 18 | Sobic.006G230900 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@wound induced protein, putative, expressed | - |
| 19 | Sobic.002G140300 | plastocyanin-like domain containing protein, putative, expressed | - |
| 20 | Sobic.007G212200 | AN1-like zinc finger domain containing protein, expressed | - |
Gene co-expression network
Octagon: transcription factors
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