Gene annotation
| Transcriptome id | Sobic.002G405600.1 |
|---|---|
| Synonym | ERD15, LSR1, Sb02g041980, CID1 |
| Functional annotation | early response to dehydration 15, putative, expressed |
| UniProt | C5X4S5 |
| Pfam | - |
| Panther DB | PTHR33790 PTHR33790:SF1 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT2G41430 : dehydration-induced protein (ERD15) |
|---|---|
| RAP-DB (Rice) | LOC_Os07g46670.3 : early response to dehydration 15, putative, expressed |
| MaizeGDB (Corn) | Zm00025a049048 , Zm00025a052366 , Zm00025a015366 |
| Brachypodium | - |
| Barley | - |
| Wheat | TraesCS2A02G127100 , TraesCS2D02G129500 |
| Populus | - |
JBrowse
| Sobic.002G405600 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.002G245800 | AN1-like zinc finger domain containing protein, expressed | - |
| 2 | Sobic.003G324400 | Not investigated(PubMedID : 23766026)@Contribute to rice salt tolerance under a salt inducible abscisic acid 2 (ABA2) promoter(PubMedID : 28393269)@AP2 domain containing protein, expressed | - |
| 3 | Sobic.003G202200 | uncharacterized protein PA4923, putative, expressed | K06966: pyrimidine/purine-5'-nucleotide nucleosidase |
| 4 | Sobic.010G204600 | SNF7 domain containing protein, putative, expressed | K12197: CHMP1, VPS46, charged multivesicular body protein 1 |
| 5 | Sobic.009G247900 | similar to Putative late embryogenesis abundant protein(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@late embryogenesis abundant protein, putative, expressed | - |
| 6 | Sobic.010G267600 | similar to Putative senescence-associated protein(PubMedID : 29862293)@senescence-associated protein, putative, expressed | - |
| 7 | Sobic.006G263600 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein | - |
| 8 | Sobic.001G259700 | tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@ZIM domain containing protein, putative, expressed | K13464: jasmonate ZIM domain-containing protein |
| 9 | Sobic.001G095300 | prenylated rab acceptor, putative, expressed | - |
| 10 | Sobic.001G040200 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NAC domain-containing protein 67, putative, expressed | - |
| 11 | Sobic.002G354900 | "Belonging to the Sdw3 locus, Sbi_sdw3"(PubMedID : 20464438)@gibberellin response modulator protein, putative, expressed | - |
| 12 | Sobic.009G129000 | E3 ubiquitin-protein ligase MGRN1, putative, expressed | - |
| 13 | Sobic.001G259600 | tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@ZIM domain containing protein, putative, expressed | K13464: jasmonate ZIM domain-containing protein |
| 14 | Sobic.002G140300 | plastocyanin-like domain containing protein, putative, expressed | - |
| 15 | Sobic.001G383700 | OsCML27 - Calmodulin-related calcium sensor protein, expressed | K13448: calcium-binding protein CML |
| 16 | Sobic.009G036000 | similar to Hydrophobic protein LTI6B(PubMedID : 29862293)@OsRCI2-6 - Hydrophobic protein LTI6B, expressed | - |
| 17 | Sobic.009G036100 | similar to Hydrophobic protein LTI6B(PubMedID : 29862293)@OsRCI2-6 - Hydrophobic protein LTI6B, expressed | - |
| 18 | Sobic.009G023200 | glycine-rich protein A3, putative, expressed | - |
| 19 | Sobic.001G449700 | highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@cytochrome P450, putative, expressed | K01723: hydroperoxide dehydratase |
| 20 | Sobic.002G174200 | WRKY74, expressed | - |
Gene co-expression network
Octagon: transcription factors
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