Gene annotation
Transcriptome id Sobic.004G280900.1
Synonym Sb04g031740, BRH1
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt C5Y0X8
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF152
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT3G61460 : brassinosteroid-responsive RING-H2
RAP-DB (Rice) LOC_Os02g45780.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a021529 , Zm00025a010080 , Zm00025a032332
Brachypodium KQK00791
Barley HORVU0Hr1G016480.1
Wheat -
Populus -


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cDNA sequences
Sobic.004G280900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G077400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed K01723: hydroperoxide dehydratase
2 Sobic.005G037000 cytochrome P450, putative, expressed -
3 Sobic.009G217600 STE_MEKK_ste11_MAP3K.19 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
4 Sobic.001G209800 harpin-induced protein 1 domain containing protein, expressed -
5 Sobic.001G441100 immediate-early fungal elicitor protein CMPG1, putative, expressed -
6 Sobic.002G036100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@zinc-finger protein, putative, expressed -
7 Sobic.002G140300 plastocyanin-like domain containing protein, putative, expressed -
8 Sobic.001G538866 - -
9 Sobic.001G341600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@tyrosine protein kinase domain containing protein, putative, expressed -
10 Sobic.006G165100 Trihelix Family(PubMedID : 24864043)@transcription factor like protein, putative, expressed -
11 Sobic.007G126300 spotted leaf 11, putative, expressed -
12 Sobic.003G234000 DUF1645 domain containing protein, putative, expressed -
13 Sobic.001G035000 ZOS3-22 - C2H2 zinc finger protein, expressed -
14 Sobic.004G222500 gibberellin 2-beta-dioxygenase 7, putative, expressed K04125: gibberellin 2beta-dioxygenase
15 Sobic.010G209100 WRKY28, expressed -
16 Sobic.001G259600 tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@ZIM domain containing protein, putative, expressed K13464: jasmonate ZIM domain-containing protein
17 Sobic.006G179500 protein kinase APK1B, chloroplast precursor, putative, expressed -
18 Sobic.004G319700 ethylene-responsive transcription factor, putative, expressed -
19 Sobic.003G313800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytokinin dehydrogenase precursor, putative, expressed K00279: cytokinin dehydrogenase
20 Sobic.006G231100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@wound induced protein, putative, expressed -


Gene co-expression network
sample Sobic004G280900 Sobic004G280900 Sobic001G077400 Sobic001G077400 Sobic004G280900--Sobic001G077400 Sobic005G037000 Sobic005G037000 Sobic004G280900--Sobic005G037000 Sobic009G217600 Sobic009G217600 Sobic004G280900--Sobic009G217600 Sobic001G209800 Sobic001G209800 Sobic004G280900--Sobic001G209800 Sobic001G441100 Sobic001G441100 Sobic004G280900--Sobic001G441100 Sobic002G036100 Sobic002G036100 Sobic004G280900--Sobic002G036100 Sobic002G140300 Sobic002G140300 Sobic004G280900--Sobic002G140300 Sobic001G538866 Sobic001G538866 Sobic004G280900--Sobic001G538866 Sobic001G341600 Sobic001G341600 Sobic004G280900--Sobic001G341600 Sobic001G077400--Sobic004G280900 Sobic001G077400--Sobic005G037000 Sobic001G077400--Sobic001G209800 Sobic001G077400--Sobic001G441100 Sobic001G077400--Sobic009G217600 Sobic001G035000 Sobic001G035000 Sobic001G077400--Sobic001G035000 Sobic001G077400--Sobic002G036100 Sobic006G165100 Sobic006G165100 Sobic001G077400--Sobic006G165100 Sobic001G077400--Sobic001G341600 Sobic005G037000--Sobic001G077400 Sobic005G037000--Sobic004G280900 Sobic005G037000--Sobic001G441100 Sobic005G037000--Sobic001G035000 Sobic005G037000--Sobic001G209800 Sobic005G037000--Sobic009G217600 Sobic007G126300 Sobic007G126300 Sobic005G037000--Sobic007G126300 Sobic001G259600 Sobic001G259600 Sobic005G037000--Sobic001G259600 Sobic005G037000--Sobic006G165100 Sobic009G217600--Sobic001G441100 Sobic009G217600--Sobic001G341600 Sobic009G217600--Sobic001G077400 Sobic009G217600--Sobic001G035000 Sobic009G217600--Sobic004G280900 Sobic009G217600--Sobic001G209800 Sobic009G217600--Sobic005G037000 Sobic003G353800 Sobic003G353800 Sobic009G217600--Sobic003G353800 Sobic002G278500 Sobic002G278500 Sobic009G217600--Sobic002G278500 Sobic001G209800--Sobic001G077400 Sobic001G209800--Sobic004G280900 Sobic001G209800--Sobic009G217600 Sobic001G209800--Sobic001G035000 Sobic001G209800--Sobic005G037000 Sobic001G209800--Sobic001G441100 Sobic010G076600 Sobic010G076600 Sobic001G209800--Sobic010G076600 Sobic001G209800--Sobic001G341600 Sobic006G274300 Sobic006G274300 Sobic001G209800--Sobic006G274300 Sobic001G441100--Sobic001G035000 Sobic001G441100--Sobic009G217600 Sobic001G441100--Sobic001G077400 Sobic001G441100--Sobic001G341600 Sobic001G441100--Sobic005G037000 Sobic001G441100--Sobic004G280900 Sobic001G441100--Sobic002G278500 Sobic001G441100--Sobic001G209800 Sobic001G441100--Sobic002G140300 Sobic002G036100--Sobic001G077400 Sobic002G036100--Sobic004G280900 Sobic002G036100--Sobic001G538866 Sobic002G036100--Sobic006G165100 Sobic002G036100--Sobic002G140300 Sobic002G036100--Sobic001G259600 Sobic003G313800 Sobic003G313800 Sobic002G036100--Sobic003G313800 Sobic002G036150 Sobic002G036150 Sobic002G036100--Sobic002G036150 Sobic001G040200 Sobic001G040200 Sobic002G036100--Sobic001G040200 Sobic006G179500 Sobic006G179500 Sobic002G140300--Sobic006G179500 Sobic002G140300--Sobic001G040200 Sobic002G140300--Sobic006G165100 Sobic004G222500 Sobic004G222500 Sobic002G140300--Sobic004G222500 Sobic002G140300--Sobic001G538866 Sobic009G036100 Sobic009G036100 Sobic002G140300--Sobic009G036100 Sobic006G183400 Sobic006G183400 Sobic002G140300--Sobic006G183400 Sobic003G324400 Sobic003G324400 Sobic002G140300--Sobic003G324400 Sobic009G247900 Sobic009G247900 Sobic002G140300--Sobic009G247900 Sobic001G538866--Sobic002G140300 Sobic001G538866--Sobic001G040200 Sobic001G538866--Sobic004G280900 Sobic001G538866--Sobic002G036100 Sobic001G538866--Sobic003G324400 Sobic001G538866--Sobic006G165100 Sobic001G538866--Sobic001G077400 Sobic007G151100 Sobic007G151100 Sobic001G538866--Sobic007G151100 Sobic009G200700 Sobic009G200700 Sobic001G538866--Sobic009G200700 Sobic001G341600--Sobic009G217600 Sobic001G341600--Sobic001G441100 Sobic001G341600--Sobic001G035000 Sobic001G341600--Sobic001G077400 Sobic001G341600--Sobic004G280900 Sobic001G341600--Sobic002G140300 Sobic001G341600--Sobic003G353800 Sobic001G341600--Sobic002G278500 Sobic001G341600--Sobic001G538866
Octagon: transcription factors


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