Gene annotation
Transcriptome id Sobic.001G147200.1
Synonym Sb01g012830
Functional annotation DNA-binding protein-like, putative, expressed
UniProt C5WQF5
Pfam PF13696 PF08783
Panther DB PTHR15439 PTHR15439:SF6
NCBI CDD KOG0314; Predicted E3 ubiquitin ligase
KEGG Orthology K10624; E3 ubiquitin-protein ligase RBBP6
Gene Ontology GO:0008270; zinc ion binding GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT5G47430 : DWNN domain, a CCHC-type zinc finger
RAP-DB (Rice) LOC_Os03g45730.1 : DNA-binding protein-like, putative, expressed
MaizeGDB (Corn) Zm00025a007546 , Zm00025a017197
Brachypodium KQK13891 , PNT74347
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G019200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
2 Sobic.010G246000 zinc finger, C3HC4 type domain containing protein, expressed -
3 Sobic.002G118600 SNARE domain containing protein, putative, expressed K18211: synaptosomal-associated protein 25
4 Sobic.010G204300 expressed protein -
5 Sobic.006G228300 ethylene-responsive protein related, putative, expressed -
6 Sobic.001G399100 peroxisomal biogenesis factor 11, putative, expressed -
7 Sobic.001G538866 - -
8 Sobic.002G374100 tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@zinc-finger protein, putative, expressed K13464: jasmonate ZIM domain-containing protein
9 Sobic.006G263100 expressed protein -
10 Sobic.003G429300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@NADPH quinone oxidoreductase, putative, expressed -
11 Sobic.007G171000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@monodehydroascorbate reductase, putative, expressed K08232: monodehydroascorbate reductase (NADH)
12 Sobic.001G095300 prenylated rab acceptor, putative, expressed -
13 Sobic.007G198100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@membrane protein, putative, expressed -
14 Sobic.001G290400 no apical meristem protein, putative, expressed -
15 Sobic.003G061900 zinc finger, C3HC4 type domain containing protein, expressed K19041: E3 ubiquitin-protein ligase RNF38/44
16 Sobic.002G083266 - K00326: cytochrome-b5 reductase
17 Sobic.006G192500 CAMK_CAMK_like.27 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
18 Sobic.010G228000 Protein kinase domain containing protein, expressed -
19 Sobic.008G111100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@transporter family protein, putative, expressed -
20 Sobic.001G074200 LRR receptor-like protein kinase, putative, expressed -


Gene co-expression network
sample Sobic001G147200 Sobic001G147200 Sobic003G019200 Sobic003G019200 Sobic001G147200--Sobic003G019200 Sobic010G246000 Sobic010G246000 Sobic001G147200--Sobic010G246000 Sobic002G118600 Sobic002G118600 Sobic001G147200--Sobic002G118600 Sobic010G204300 Sobic010G204300 Sobic001G147200--Sobic010G204300 Sobic006G228300 Sobic006G228300 Sobic001G147200--Sobic006G228300 Sobic001G399100 Sobic001G399100 Sobic001G147200--Sobic001G399100 Sobic001G538866 Sobic001G538866 Sobic001G147200--Sobic001G538866 Sobic002G374100 Sobic002G374100 Sobic001G147200--Sobic002G374100 Sobic006G263100 Sobic006G263100 Sobic001G147200--Sobic006G263100 Sobic003G019200--Sobic010G246000 Sobic003G019200--Sobic001G147200 Sobic009G200700 Sobic009G200700 Sobic003G019200--Sobic009G200700 Sobic003G019200--Sobic001G399100 Sobic007G198100 Sobic007G198100 Sobic003G019200--Sobic007G198100 Sobic003G019200--Sobic002G374100 Sobic003G429300 Sobic003G429300 Sobic003G019200--Sobic003G429300 Sobic010G224200 Sobic010G224200 Sobic003G019200--Sobic010G224200 Sobic008G111100 Sobic008G111100 Sobic003G019200--Sobic008G111100 Sobic002G294700 Sobic002G294700 Sobic010G246000--Sobic002G294700 Sobic010G246000--Sobic002G374100 Sobic010G246000--Sobic003G019200 Sobic010G246000--Sobic001G147200 Sobic010G245800 Sobic010G245800 Sobic010G246000--Sobic010G245800 Sobic008G177800 Sobic008G177800 Sobic010G246000--Sobic008G177800 Sobic002G354900 Sobic002G354900 Sobic010G246000--Sobic002G354900 Sobic010G234600 Sobic010G234600 Sobic010G246000--Sobic010G234600 Sobic004G036600 Sobic004G036600 Sobic010G246000--Sobic004G036600 Sobic002G118600--Sobic001G147200 Sobic001G341600 Sobic001G341600 Sobic002G118600--Sobic001G341600 Sobic003G341100 Sobic003G341100 Sobic002G118600--Sobic003G341100 Sobic010G228000 Sobic010G228000 Sobic002G118600--Sobic010G228000 Sobic002G118600--Sobic002G374100 Sobic001G290400 Sobic001G290400 Sobic002G118600--Sobic001G290400 Sobic007G011000 Sobic007G011000 Sobic002G118600--Sobic007G011000 Sobic002G118600--Sobic001G538866 Sobic002G118600--Sobic006G228300 Sobic008G161000 Sobic008G161000 Sobic010G204300--Sobic008G161000 Sobic003G115800 Sobic003G115800 Sobic010G204300--Sobic003G115800 Sobic007G059900 Sobic007G059900 Sobic010G204300--Sobic007G059900 Sobic010G204300--Sobic001G147200 Sobic002G296300 Sobic002G296300 Sobic010G204300--Sobic002G296300 Sobic002G202300 Sobic002G202300 Sobic010G204300--Sobic002G202300 Sobic003G181500 Sobic003G181500 Sobic010G204300--Sobic003G181500 Sobic006G062800 Sobic006G062800 Sobic010G204300--Sobic006G062800 Sobic010G204300--Sobic010G246000 Sobic006G089300 Sobic006G089300 Sobic006G228300--Sobic006G089300 Sobic010G200700 Sobic010G200700 Sobic006G228300--Sobic010G200700 Sobic006G179500 Sobic006G179500 Sobic006G228300--Sobic006G179500 Sobic001G040200 Sobic001G040200 Sobic006G228300--Sobic001G040200 Sobic006G228300--Sobic001G538866 Sobic002G140300 Sobic002G140300 Sobic006G228300--Sobic002G140300 Sobic001G095300 Sobic001G095300 Sobic006G228300--Sobic001G095300 Sobic002G131800 Sobic002G131800 Sobic006G228300--Sobic002G131800 Sobic006G228300--Sobic001G341600 Sobic009G033700 Sobic009G033700 Sobic001G399100--Sobic009G033700 Sobic009G046600 Sobic009G046600 Sobic001G399100--Sobic009G046600 Sobic010G107100 Sobic010G107100 Sobic001G399100--Sobic010G107100 Sobic004G186500 Sobic004G186500 Sobic001G399100--Sobic004G186500 Sobic001G399100--Sobic003G019200 Sobic001G399100--Sobic009G200700 Sobic005G028700 Sobic005G028700 Sobic001G399100--Sobic005G028700 Sobic005G229700 Sobic005G229700 Sobic001G399100--Sobic005G229700 Sobic010G086200 Sobic010G086200 Sobic001G399100--Sobic010G086200 Sobic001G538866--Sobic002G140300 Sobic001G538866--Sobic001G040200 Sobic004G280900 Sobic004G280900 Sobic001G538866--Sobic004G280900 Sobic002G036100 Sobic002G036100 Sobic001G538866--Sobic002G036100 Sobic003G324400 Sobic003G324400 Sobic001G538866--Sobic003G324400 Sobic006G165100 Sobic006G165100 Sobic001G538866--Sobic006G165100 Sobic001G077400 Sobic001G077400 Sobic001G538866--Sobic001G077400 Sobic007G151100 Sobic007G151100 Sobic001G538866--Sobic007G151100 Sobic001G538866--Sobic009G200700 Sobic002G374100--Sobic002G294700 Sobic002G374100--Sobic010G246000 Sobic001G516600 Sobic001G516600 Sobic002G374100--Sobic001G516600 Sobic002G374100--Sobic002G354900 Sobic002G374100--Sobic010G228000 Sobic002G374100--Sobic004G036600 Sobic002G353400 Sobic002G353400 Sobic002G374100--Sobic002G353400 Sobic002G374100--Sobic008G177800 Sobic002G374100--Sobic002G118600 Sobic004G280800 Sobic004G280800 Sobic006G263100--Sobic004G280800 Sobic006G263100--Sobic010G246000 Sobic006G263100--Sobic001G290400 Sobic002G379400 Sobic002G379400 Sobic006G263100--Sobic002G379400 Sobic002G330300 Sobic002G330300 Sobic006G263100--Sobic002G330300 Sobic006G263100--Sobic001G147200 Sobic006G263100--Sobic002G294700 Sobic006G263100--Sobic010G228000 Sobic001G409900 Sobic001G409900 Sobic006G263100--Sobic001G409900
Octagon: transcription factors


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