Gene annotation
Transcriptome id Sobic.004G283300.1
Synonym
Functional annotation AP2 domain containing protein, expressed
UniProt A0A194YRZ8
Pfam PF00847
Panther DB PTHR31985 PTHR31985:SF9
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT1G12630 : Integrase-type DNA-binding superfamily protein
RAP-DB (Rice) LOC_Os02g45420.1 : AP2 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a010156 , Zm00025a010316 , Zm00025a032313 , Zm00025a021501 , Zm00025a032201 , Zm00025a020881 , Zm00025a056876
Brachypodium KQK00606 , KQK00604 , KQJ84122 , KQK00757
Barley HORVU4Hr1G085910.2 , HORVU4Hr1G085910.1 , HORVU6Hr1G065430.1 , HORVU6Hr1G065430.2 , HORVU6Hr1G065430.3
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G344700 remorin, putative, expressed -
2 Sobic.010G016500 "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@ Relatively high abundance in cold tolerant sorghum under cold stress(PubMedID : 26645959)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@key regulator in cold signaling pathway (Arabidopsis)(PubMedID : 16244905)@dehydration-responsive element-binding protein, putative, expressed -
3 Sobic.001G081600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed -
4 Sobic.004G283201 - -
5 Sobic.009G170100 DUF640 domain containing protein, putative, expressed -
6 Sobic.006G032200 heavy metal-associated domain containing protein, expressed -
7 Sobic.004G281200 chitin-inducible gibberellin-responsive protein 2, putative, expressed -
8 Sobic.001G476400 - -
9 Sobic.006G210300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
10 Sobic.006G055600 expressed high in San Chi San (an efficient nitrogen user)(PubMedID : 28697783)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@DnaK family protein, putative, expressed K03283: heat shock 70kDa protein 1/2/6/8
11 Sobic.009G258300 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root, expression induced by BR treatment"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
12 Sobic.001G063600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CAMK_CAMK_like.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
13 Sobic.002G217100 tyrosine protein kinase domain containing protein, putative, expressed -
14 Sobic.005G087800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
15 Sobic.006G005600 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@heat shock protein, putative, expressed K04079: HSP90A, molecular chaperone HtpG
16 Sobic.004G285100 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed K17794: mitochondrial import inner membrane translocase subunit TIM23
17 Sobic.001G462800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed -
18 Sobic.002G203000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.34 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
19 Sobic.006G216500 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.010G076700 expressed protein -


Gene co-expression network
sample Sobic004G283300 Sobic004G283300 Sobic002G344700 Sobic002G344700 Sobic004G283300--Sobic002G344700 Sobic010G016500 Sobic010G016500 Sobic004G283300--Sobic010G016500 Sobic001G081600 Sobic001G081600 Sobic004G283300--Sobic001G081600 Sobic004G283201 Sobic004G283201 Sobic004G283300--Sobic004G283201 Sobic009G170100 Sobic009G170100 Sobic004G283300--Sobic009G170100 Sobic006G032200 Sobic006G032200 Sobic004G283300--Sobic006G032200 Sobic004G281200 Sobic004G281200 Sobic004G283300--Sobic004G281200 Sobic001G476400 Sobic001G476400 Sobic004G283300--Sobic001G476400 Sobic006G210300 Sobic006G210300 Sobic004G283300--Sobic006G210300 Sobic002G344700--Sobic004G283300 Sobic002G344700--Sobic001G081600 Sobic001G462800 Sobic001G462800 Sobic002G344700--Sobic001G462800 Sobic002G344700--Sobic006G032200 Sobic004G025000 Sobic004G025000 Sobic002G344700--Sobic004G025000 Sobic002G344700--Sobic009G170100 Sobic002G344700--Sobic004G281200 Sobic002G344700--Sobic006G210300 Sobic002G217100 Sobic002G217100 Sobic002G344700--Sobic002G217100 Sobic010G016500--Sobic004G281200 Sobic004G244300 Sobic004G244300 Sobic010G016500--Sobic004G244300 Sobic006G194600 Sobic006G194600 Sobic010G016500--Sobic006G194600 Sobic006G203000 Sobic006G203000 Sobic010G016500--Sobic006G203000 Sobic010G016500--Sobic004G283300 Sobic010G016500--Sobic002G217100 Sobic004G244100 Sobic004G244100 Sobic010G016500--Sobic004G244100 Sobic010G016500--Sobic001G081600 Sobic002G182800 Sobic002G182800 Sobic010G016500--Sobic002G182800 Sobic001G081600--Sobic001G462800 Sobic001G081600--Sobic002G217100 Sobic001G081600--Sobic006G210300 Sobic001G081600--Sobic004G283300 Sobic002G197600 Sobic002G197600 Sobic001G081600--Sobic002G197600 Sobic001G081600--Sobic004G281200 Sobic001G081600--Sobic002G344700 Sobic001G081600--Sobic004G025000 Sobic001G081600--Sobic001G476400 Sobic006G055600 Sobic006G055600 Sobic004G283201--Sobic006G055600 Sobic006G005600 Sobic006G005600 Sobic004G283201--Sobic006G005600 Sobic003G373150 Sobic003G373150 Sobic004G283201--Sobic003G373150 Sobic006G184800 Sobic006G184800 Sobic004G283201--Sobic006G184800 Sobic001G092600 Sobic001G092600 Sobic004G283201--Sobic001G092600 Sobic004G283201--Sobic004G283300 Sobic004G283201--Sobic010G016500 Sobic001G125100 Sobic001G125100 Sobic004G283201--Sobic001G125100 Sobic009G201500 Sobic009G201500 Sobic004G283201--Sobic009G201500 Sobic009G170100--Sobic006G032200 Sobic009G170100--Sobic004G283300 Sobic001G050800 Sobic001G050800 Sobic009G170100--Sobic001G050800 Sobic009G170100--Sobic004G281200 Sobic009G170100--Sobic001G081600 Sobic001G063600 Sobic001G063600 Sobic009G170100--Sobic001G063600 Sobic003G342600 Sobic003G342600 Sobic009G170100--Sobic003G342600 Sobic009G170100--Sobic002G344700 Sobic009G170100--Sobic010G016500 Sobic006G032200--Sobic009G170100 Sobic006G032200--Sobic004G283300 Sobic002G037400 Sobic002G037400 Sobic006G032200--Sobic002G037400 Sobic006G032200--Sobic006G203000 Sobic006G032200--Sobic004G281200 Sobic006G032200--Sobic002G344700 Sobic009G128300 Sobic009G128300 Sobic006G032200--Sobic009G128300 Sobic001G075101 Sobic001G075101 Sobic006G032200--Sobic001G075101 Sobic006G032200--Sobic010G016500 Sobic004G281200--Sobic010G016500 Sobic004G281200--Sobic004G244300 Sobic008G059000 Sobic008G059000 Sobic004G281200--Sobic008G059000 Sobic004G281200--Sobic006G194600 Sobic004G281200--Sobic006G203000 Sobic004G281200--Sobic002G217100 Sobic004G281200--Sobic006G210300 Sobic004G281200--Sobic001G081600 Sobic004G281200--Sobic004G244100 Sobic001G476400--Sobic001G063600 Sobic001G051600 Sobic001G051600 Sobic001G476400--Sobic001G051600 Sobic001G473900 Sobic001G473900 Sobic001G476400--Sobic001G473900 Sobic010G076600 Sobic010G076600 Sobic001G476400--Sobic010G076600 Sobic001G476400--Sobic001G081600 Sobic010G080400 Sobic010G080400 Sobic001G476400--Sobic010G080400 Sobic006G095600 Sobic006G095600 Sobic001G476400--Sobic006G095600 Sobic001G476400--Sobic004G283300 Sobic001G489600 Sobic001G489600 Sobic001G476400--Sobic001G489600 Sobic006G210300--Sobic002G217100 Sobic006G210300--Sobic004G281200 Sobic006G210300--Sobic001G081600 Sobic006G210300--Sobic002G197600 Sobic006G210300--Sobic001G462800 Sobic002G367900 Sobic002G367900 Sobic006G210300--Sobic002G367900 Sobic006G210300--Sobic010G016500 Sobic006G210300--Sobic004G244100 Sobic006G184400 Sobic006G184400 Sobic006G210300--Sobic006G184400
Octagon: transcription factors


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