Gene annotation
Transcriptome id Sobic.002G375300.1
Synonym Sb02g039290
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
FYVE zinc finger domain containing protein, expressed
UniProt A0A1W0W7E4
Pfam PF01363 PF04366
Panther DB PTHR15629 PTHR15629:SF12
NCBI CDD KOG1843; Uncharacterized conserved protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G43230 : RING/FYVE/PHD-type zinc finger family protein
RAP-DB (Rice) LOC_Os07g42500.1 : FYVE zinc finger domain containing protein, expressed
MaizeGDB (Corn) Zm00025a048762
Brachypodium KQK15136
Barley HORVU2Hr1G030860.1 , HORVU2Hr1G030860.3 , HORVU2Hr1G030860.2 , HORVU2Hr1G030860.4
Wheat TraesCS2D02G175500 , TraesCS2A02G168100 , TraesCS2B02G194100
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.002G375300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G158500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@LSD1 zinc finger domain containing protein, expressed -
2 Sobic.001G395400 ubiquitin-conjugating enzyme, putative, expressed K10578: UBE2J1, NCUBE1, ubiquitin-conjugating enzyme E2 J1
3 Sobic.010G000900 spotted leaf 11, putative, expressed -
4 Sobic.003G416400 WD40-like domain containing protein, putative, expressed -
5 Sobic.007G068900 autophagy-related protein, putative, expressed K08341: GABARAP, ATG8, GABA(A) receptor-associated protein
6 Sobic.003G098000 armadillo/beta-catenin repeat family protein, putative, expressed K08332: vacuolar protein 8
7 Sobic.006G092400 calmodulin binding protein, putative, expressed -
8 Sobic.002G352600 expressed protein -
9 Sobic.004G102400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@FYVE zinc finger domain containing protein, expressed -
10 Sobic.010G164000 FYVE zinc finger domain containing protein, expressed -
11 Sobic.010G229400 polyprenyl synthetase, putative, expressed K14066: geranyl diphosphate synthase
12 Sobic.006G209400 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
13 Sobic.003G295900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@HSF-type DNA-binding domain containing protein, expressed K09419: heat shock transcription factor, other eukaryote
14 Sobic.004G167400 expressed protein -
15 Sobic.001G057800 transmembrane BAX inhibitor motif-containing protein, putative, expressed K06890: uncharacterized protein
16 Sobic.002G385900 DCN1, putative, expressed K17822: DCN1-like protein 1/2
17 Sobic.004G042300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
18 Sobic.007G216100 expressed protein -
19 Sobic.001G313500 tobamovirus multiplication protein, putative, expressed -
20 Sobic.001G433400 Zinc finger, C3HC4 type domain containing protein, expressed -


Gene co-expression network
sample Sobic002G375300 Sobic002G375300 Sobic001G158500 Sobic001G158500 Sobic002G375300--Sobic001G158500 Sobic001G395400 Sobic001G395400 Sobic002G375300--Sobic001G395400 Sobic010G000900 Sobic010G000900 Sobic002G375300--Sobic010G000900 Sobic003G416400 Sobic003G416400 Sobic002G375300--Sobic003G416400 Sobic007G068900 Sobic007G068900 Sobic002G375300--Sobic007G068900 Sobic003G098000 Sobic003G098000 Sobic002G375300--Sobic003G098000 Sobic006G092400 Sobic006G092400 Sobic002G375300--Sobic006G092400 Sobic002G352600 Sobic002G352600 Sobic002G375300--Sobic002G352600 Sobic004G102400 Sobic004G102400 Sobic002G375300--Sobic004G102400 Sobic001G158500--Sobic004G102400 Sobic001G057800 Sobic001G057800 Sobic001G158500--Sobic001G057800 Sobic001G158500--Sobic002G375300 Sobic003G367451 Sobic003G367451 Sobic001G158500--Sobic003G367451 Sobic002G083266 Sobic002G083266 Sobic001G158500--Sobic002G083266 Sobic001G433400 Sobic001G433400 Sobic001G158500--Sobic001G433400 Sobic002G264400 Sobic002G264400 Sobic001G158500--Sobic002G264400 Sobic002G385900 Sobic002G385900 Sobic001G158500--Sobic002G385900 Sobic001G085900 Sobic001G085900 Sobic001G158500--Sobic001G085900 Sobic007G166100 Sobic007G166100 Sobic001G395400--Sobic007G166100 Sobic002G400000 Sobic002G400000 Sobic001G395400--Sobic002G400000 Sobic006G263900 Sobic006G263900 Sobic001G395400--Sobic006G263900 Sobic001G395400--Sobic003G416400 Sobic010G168600 Sobic010G168600 Sobic001G395400--Sobic010G168600 Sobic003G077900 Sobic003G077900 Sobic001G395400--Sobic003G077900 Sobic001G395400--Sobic010G000900 Sobic001G395400--Sobic001G057800 Sobic009G165800 Sobic009G165800 Sobic001G395400--Sobic009G165800 Sobic010G000900--Sobic002G400000 Sobic003G012200 Sobic003G012200 Sobic010G000900--Sobic003G012200 Sobic001G047400 Sobic001G047400 Sobic010G000900--Sobic001G047400 Sobic003G261400 Sobic003G261400 Sobic010G000900--Sobic003G261400 Sobic004G130900 Sobic004G130900 Sobic010G000900--Sobic004G130900 Sobic001G051200 Sobic001G051200 Sobic010G000900--Sobic001G051200 Sobic001G323000 Sobic001G323000 Sobic010G000900--Sobic001G323000 Sobic001G388200 Sobic001G388200 Sobic010G000900--Sobic001G388200 Sobic001G085100 Sobic001G085100 Sobic010G000900--Sobic001G085100 Sobic003G416400--Sobic001G395400 Sobic002G105200 Sobic002G105200 Sobic003G416400--Sobic002G105200 Sobic003G416400--Sobic002G375300 Sobic003G416400--Sobic001G057800 Sobic003G416400--Sobic003G077900 Sobic003G416400--Sobic002G400000 Sobic003G201900 Sobic003G201900 Sobic003G416400--Sobic003G201900 Sobic003G416400--Sobic002G385900 Sobic003G416400--Sobic001G323000 Sobic007G068900--Sobic002G375300 Sobic003G246700 Sobic003G246700 Sobic007G068900--Sobic003G246700 Sobic010G164000 Sobic010G164000 Sobic007G068900--Sobic010G164000 Sobic005G086100 Sobic005G086100 Sobic007G068900--Sobic005G086100 Sobic004G067100 Sobic004G067100 Sobic007G068900--Sobic004G067100 Sobic007G068900--Sobic010G000900 Sobic001G508100 Sobic001G508100 Sobic007G068900--Sobic001G508100 Sobic007G007000 Sobic007G007000 Sobic007G068900--Sobic007G007000 Sobic001G121200 Sobic001G121200 Sobic007G068900--Sobic001G121200 Sobic003G098000--Sobic002G375300 Sobic003G098000--Sobic004G102400 Sobic003G228100 Sobic003G228100 Sobic003G098000--Sobic003G228100 Sobic004G042300 Sobic004G042300 Sobic003G098000--Sobic004G042300 Sobic003G098000--Sobic003G246700 Sobic004G337200 Sobic004G337200 Sobic003G098000--Sobic004G337200 Sobic002G217400 Sobic002G217400 Sobic003G098000--Sobic002G217400 Sobic005G203800 Sobic005G203800 Sobic003G098000--Sobic005G203800 Sobic003G098000--Sobic001G057800 Sobic007G179800 Sobic007G179800 Sobic006G092400--Sobic007G179800 Sobic002G130800 Sobic002G130800 Sobic006G092400--Sobic002G130800 Sobic006G209400 Sobic006G209400 Sobic006G092400--Sobic006G209400 Sobic010G074300 Sobic010G074300 Sobic006G092400--Sobic010G074300 Sobic004G235000 Sobic004G235000 Sobic006G092400--Sobic004G235000 Sobic006G092400--Sobic001G508100 Sobic003G220800 Sobic003G220800 Sobic006G092400--Sobic003G220800 Sobic006G090000 Sobic006G090000 Sobic006G092400--Sobic006G090000 Sobic010G147100 Sobic010G147100 Sobic006G092400--Sobic010G147100 Sobic003G015900 Sobic003G015900 Sobic002G352600--Sobic003G015900 Sobic010G027600 Sobic010G027600 Sobic002G352600--Sobic010G027600 Sobic009G228700 Sobic009G228700 Sobic002G352600--Sobic009G228700 Sobic004G121100 Sobic004G121100 Sobic002G352600--Sobic004G121100 Sobic009G217100 Sobic009G217100 Sobic002G352600--Sobic009G217100 Sobic002G352600--Sobic001G121200 Sobic002G352600--Sobic010G000900 Sobic004G066200 Sobic004G066200 Sobic002G352600--Sobic004G066200 Sobic003G248200 Sobic003G248200 Sobic002G352600--Sobic003G248200 Sobic003G338400 Sobic003G338400 Sobic004G102400--Sobic003G338400 Sobic004G102400--Sobic001G158500 Sobic001G003000 Sobic001G003000 Sobic004G102400--Sobic001G003000 Sobic009G167700 Sobic009G167700 Sobic004G102400--Sobic009G167700 Sobic005G150800 Sobic005G150800 Sobic004G102400--Sobic005G150800 Sobic006G271200 Sobic006G271200 Sobic004G102400--Sobic006G271200 Sobic001G089800 Sobic001G089800 Sobic004G102400--Sobic001G089800 Sobic004G102400--Sobic001G057800 Sobic004G102400--Sobic004G042300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.