Gene annotation
Transcriptome id Sobic.003G012200.1,Sobic.003G012200.3,Sobic.003G012200.2
Synonym Sb03g001240
Functional annotation tRNA synthetases class II domain containing protein, expressed
UniProt A0A1B6Q0W6 , A0A1B6Q0S3 , A0A1B6Q0S0
Pfam PF00152
Panther DB PTHR22594 PTHR22594:SF33
NCBI CDD -
KEGG Orthology K01876; aspartyl-tRNA synthetase
Gene Ontology GO:0006418; tRNA aminoacylation for protein translation GO:0005524ATP binding GO:0004812aminoacyl-tRNA ligase activity GO:0000166nucleotide binding


Orthologs (automatic annotation)
TAIR AT4G31180 : Class II aminoacyl-tRNA and biotin synthetases superfamily protein
RAP-DB (Rice) LOC_Os02g46130.1 : tRNA synthetases class II domain containing protein, expressed
MaizeGDB (Corn) Zm00025a018882 , Zm00025a035957
Brachypodium KQJ92399 , KQJ86708
Barley HORVU7Hr1G107410.3 , HORVU5Hr1G050160.1 , HORVU5Hr1G050160.2 , HORVU5Hr1G050160.4 , HORVU7Hr1G107410.1 , HORVU7Hr1G107410.2 , HORVU7Hr1G107410.5
Wheat TraesCS5A02G160100 , TraesCS5A02G160100 , TraesCS7B02G222700 , TraesCS5B02G157800 , TraesCS5A02G327900 , TraesCS5D02G333800 , TraesCS5D02G333800 , TraesCS5D02G165200
Populus -


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cDNA sequences
Sobic.003G012200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G199100 peptidase, M24 family protein, putative, expressed K01265: methionyl aminopeptidase
2 Sobic.003G344900 selT-like protein precursor, putative, expressed -
3 Sobic.010G000900 spotted leaf 11, putative, expressed -
4 Sobic.001G085100 expressed protein -
5 Sobic.004G348300 Ser/Thr protein phosphatase family protein, putative, expressed K06269: serine/threonine-protein phosphatase PP1 catalytic subunit
6 Sobic.009G075800 serine/threonine protein phosphatase 5, putative, expressed K04460: serine/threonine-protein phosphatase 5
7 Sobic.004G275700 adaptor complexes medium subunit family domain containing protein, expressed K11826: AP-2 complex subunit mu-1
8 Sobic.009G259400 pleckstrin homology domain-containing protein-related taxo, putative, expressed -
9 Sobic.001G047400 SNF7 domain containing protein, putative, expressed K12194: CHMP4, SNF7, charged multivesicular body protein 4
10 Sobic.002G226900 zinc-binding alcohol dehydrogenase domain-containing protein 2, putative, expressed K07119: PTGR3, prostaglandin reductase 3
11 Sobic.004G119200 splicing factor 3B subunit 5, putative, expressed K12832: SF3B5, splicing factor 3B subunit 5
12 Sobic.009G207000 protein of unknown function DUF502 domain containing protein, expressed -
13 Sobic.009G222500 expressed protein -
14 Sobic.010G205800 palmitoyltransferase TIP1, putative, expressed K18932: palmitoyltransferase
15 Sobic.001G033500 dolichyl-phosphate beta-glycosyltransferase, putative, expressed K00729: dolichyl-phosphate beta-glucosyltransferase
16 Sobic.004G358600 cation efflux family protein, putative, expressed K14692: SLC30A5_7, ZNT5_7, MTP, solute carrier family 30 (zinc transporter), member 5/7
17 Sobic.005G044800 hydrolase, alpha/beta fold family domain containing protein, expressed -
18 Sobic.001G091300 HTH DNA-binding protein, putative, expressed -
19 Sobic.004G006200 ferrochelatase-2, chloroplast precursor, putative, expressed K01772: hemH, protoporphyrin/coproporphyrin ferrochelatase
20 Sobic.001G261436 - -


Gene co-expression network
sample Sobic003G012200 Sobic003G012200 Sobic001G199100 Sobic001G199100 Sobic003G012200--Sobic001G199100 Sobic003G344900 Sobic003G344900 Sobic003G012200--Sobic003G344900 Sobic010G000900 Sobic010G000900 Sobic003G012200--Sobic010G000900 Sobic001G085100 Sobic001G085100 Sobic003G012200--Sobic001G085100 Sobic004G348300 Sobic004G348300 Sobic003G012200--Sobic004G348300 Sobic009G075800 Sobic009G075800 Sobic003G012200--Sobic009G075800 Sobic004G275700 Sobic004G275700 Sobic003G012200--Sobic004G275700 Sobic009G259400 Sobic009G259400 Sobic003G012200--Sobic009G259400 Sobic001G047400 Sobic001G047400 Sobic003G012200--Sobic001G047400 Sobic001G199100--Sobic003G012200 Sobic001G199100--Sobic004G275700 Sobic001G199100--Sobic009G075800 Sobic009G207000 Sobic009G207000 Sobic001G199100--Sobic009G207000 Sobic008G093000 Sobic008G093000 Sobic001G199100--Sobic008G093000 Sobic001G091300 Sobic001G091300 Sobic001G199100--Sobic001G091300 Sobic002G226900 Sobic002G226900 Sobic001G199100--Sobic002G226900 Sobic004G206700 Sobic004G206700 Sobic001G199100--Sobic004G206700 Sobic001G199100--Sobic004G348300 Sobic003G344900--Sobic003G012200 Sobic003G344900--Sobic010G000900 Sobic003G344900--Sobic004G348300 Sobic003G344900--Sobic009G259400 Sobic005G044800 Sobic005G044800 Sobic003G344900--Sobic005G044800 Sobic001G123000 Sobic001G123000 Sobic003G344900--Sobic001G123000 Sobic003G344900--Sobic001G047400 Sobic001G181700 Sobic001G181700 Sobic003G344900--Sobic001G181700 Sobic001G051200 Sobic001G051200 Sobic003G344900--Sobic001G051200 Sobic002G400000 Sobic002G400000 Sobic010G000900--Sobic002G400000 Sobic010G000900--Sobic003G012200 Sobic010G000900--Sobic001G047400 Sobic003G261400 Sobic003G261400 Sobic010G000900--Sobic003G261400 Sobic004G130900 Sobic004G130900 Sobic010G000900--Sobic004G130900 Sobic010G000900--Sobic001G051200 Sobic001G323000 Sobic001G323000 Sobic010G000900--Sobic001G323000 Sobic001G388200 Sobic001G388200 Sobic010G000900--Sobic001G388200 Sobic010G000900--Sobic001G085100 Sobic006G101700 Sobic006G101700 Sobic001G085100--Sobic006G101700 Sobic001G261436 Sobic001G261436 Sobic001G085100--Sobic001G261436 Sobic006G148200 Sobic006G148200 Sobic001G085100--Sobic006G148200 Sobic007G167900 Sobic007G167900 Sobic001G085100--Sobic007G167900 Sobic001G206900 Sobic001G206900 Sobic001G085100--Sobic001G206900 Sobic001G085100--Sobic001G047400 Sobic004G066200 Sobic004G066200 Sobic001G085100--Sobic004G066200 Sobic001G085100--Sobic001G091300 Sobic001G085100--Sobic003G012200 Sobic004G348300--Sobic003G012200 Sobic004G348300--Sobic003G344900 Sobic004G348300--Sobic001G199100 Sobic002G352600 Sobic002G352600 Sobic004G348300--Sobic002G352600 Sobic006G249700 Sobic006G249700 Sobic004G348300--Sobic006G249700 Sobic004G006200 Sobic004G006200 Sobic004G348300--Sobic004G006200 Sobic002G059300 Sobic002G059300 Sobic004G348300--Sobic002G059300 Sobic009G217100 Sobic009G217100 Sobic004G348300--Sobic009G217100 Sobic005G004200 Sobic005G004200 Sobic004G348300--Sobic005G004200 Sobic009G222500 Sobic009G222500 Sobic009G075800--Sobic009G222500 Sobic009G075800--Sobic004G275700 Sobic010G020400 Sobic010G020400 Sobic009G075800--Sobic010G020400 Sobic009G075800--Sobic001G199100 Sobic008G004600 Sobic008G004600 Sobic009G075800--Sobic008G004600 Sobic009G075800--Sobic003G012200 Sobic006G136400 Sobic006G136400 Sobic009G075800--Sobic006G136400 Sobic001G392300 Sobic001G392300 Sobic009G075800--Sobic001G392300 Sobic007G071900 Sobic007G071900 Sobic009G075800--Sobic007G071900 Sobic004G275700--Sobic001G199100 Sobic004G275700--Sobic001G091300 Sobic004G275700--Sobic009G075800 Sobic002G262900 Sobic002G262900 Sobic004G275700--Sobic002G262900 Sobic001G007000 Sobic001G007000 Sobic004G275700--Sobic001G007000 Sobic004G275700--Sobic010G020400 Sobic002G008800 Sobic002G008800 Sobic004G275700--Sobic002G008800 Sobic003G365300 Sobic003G365300 Sobic004G275700--Sobic003G365300 Sobic004G275700--Sobic003G012200 Sobic004G121100 Sobic004G121100 Sobic009G259400--Sobic004G121100 Sobic002G395801 Sobic002G395801 Sobic009G259400--Sobic002G395801 Sobic009G259400--Sobic003G012200 Sobic009G259400--Sobic009G217100 Sobic003G063000 Sobic003G063000 Sobic009G259400--Sobic003G063000 Sobic010G251000 Sobic010G251000 Sobic009G259400--Sobic010G251000 Sobic006G200600 Sobic006G200600 Sobic009G259400--Sobic006G200600 Sobic001G281600 Sobic001G281600 Sobic009G259400--Sobic001G281600 Sobic008G179700 Sobic008G179700 Sobic009G259400--Sobic008G179700 Sobic002G116900 Sobic002G116900 Sobic001G047400--Sobic002G116900 Sobic009G165800 Sobic009G165800 Sobic001G047400--Sobic009G165800 Sobic001G047400--Sobic010G000900 Sobic001G047400--Sobic001G085100 Sobic001G047400--Sobic010G251000 Sobic003G015900 Sobic003G015900 Sobic001G047400--Sobic003G015900 Sobic001G047400--Sobic001G051200 Sobic001G047400--Sobic001G261436 Sobic009G228700 Sobic009G228700 Sobic001G047400--Sobic009G228700
Octagon: transcription factors


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