Gene annotation
Transcriptome id Sobic.003G344900.1
Synonym Sb03g038860
Functional annotation selT-like protein precursor, putative, expressed
UniProt C5XP02
Pfam PF10262
Panther DB PTHR13544 PTHR13544:SF1
NCBI CDD KOG3286; Selenoprotein T
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G47300 : SELT-like protein precursor
RAP-DB (Rice) LOC_Os01g61580.1 : selT-like protein precursor, putative, expressed
MaizeGDB (Corn) Zm00025a039725
Brachypodium KQK10426 , KQK10427 , KQK10425
Barley HORVU3Hr1G087620.1 , HORVU3Hr1G087620.2 , HORVU3Hr1G087620.3 , HORVU3Hr1G087620.4 , HORVU3Hr1G087620.5
Wheat TraesCS3A02G351200 , TraesCS3A02G351200 , TraesCS3B02G383700 , TraesCS3B02G383700 , TraesCS3B02G383700 , TraesCS3D02G345400 , TraesCS3D02G345400
Populus -


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cDNA sequences
Sobic.003G344900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G012200 tRNA synthetases class II domain containing protein, expressed K01876: aspartyl-tRNA synthetase
2 Sobic.010G000900 spotted leaf 11, putative, expressed -
3 Sobic.004G348300 Ser/Thr protein phosphatase family protein, putative, expressed K06269: serine/threonine-protein phosphatase PP1 catalytic subunit
4 Sobic.009G259400 pleckstrin homology domain-containing protein-related taxo, putative, expressed -
5 Sobic.005G044800 hydrolase, alpha/beta fold family domain containing protein, expressed -
6 Sobic.001G123000 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed -
7 Sobic.001G047400 SNF7 domain containing protein, putative, expressed K12194: CHMP4, SNF7, charged multivesicular body protein 4
8 Sobic.001G181700 expressed protein -
9 Sobic.001G051200 vesicle-associated membrane protein, putative, expressed K08511: vesicle-associated membrane protein 72
K08515: vesicle-associated membrane protein 7
10 Sobic.003G015900 CWC15 homolog A, putative, expressed K12863: protein CWC15
11 Sobic.009G165800 G10 protein, putative, expressed K12873: BUD31, bud site selection protein 31
12 Sobic.007G166100 no apical meristem protein, putative, expressed -
13 Sobic.007G177000 OsAPx4 - Peroxisomal Ascorbate Peroxidase encoding gene 5,8,9, expressed K00434: L-ascorbate peroxidase
14 Sobic.002G116900 expressed protein -
15 Sobic.002G110700 uncharacterized ACR, YggU family COG1872 containing protein, expressed K09131: uncharacterized protein
16 Sobic.003G274800 mitochondrial-processing peptidase subunit, mitochondrial precursor, putative, expressed K17732: PMPCB, mitochondrial-processing peptidase subunit beta
17 Sobic.002G352600 expressed protein -
18 Sobic.001G073000 expressed protein K09659: dolichol-phosphate mannosyltransferase subunit 3
19 Sobic.007G007000 DUF250 domain containing protein, putative, expressed K15356: VRG4, GDP-mannose transporter
20 Sobic.010G090900 membrane-anchored ubiquitin-fold protein, putative, expressed -


Gene co-expression network
sample Sobic003G344900 Sobic003G344900 Sobic003G012200 Sobic003G012200 Sobic003G344900--Sobic003G012200 Sobic010G000900 Sobic010G000900 Sobic003G344900--Sobic010G000900 Sobic004G348300 Sobic004G348300 Sobic003G344900--Sobic004G348300 Sobic009G259400 Sobic009G259400 Sobic003G344900--Sobic009G259400 Sobic005G044800 Sobic005G044800 Sobic003G344900--Sobic005G044800 Sobic001G123000 Sobic001G123000 Sobic003G344900--Sobic001G123000 Sobic001G047400 Sobic001G047400 Sobic003G344900--Sobic001G047400 Sobic001G181700 Sobic001G181700 Sobic003G344900--Sobic001G181700 Sobic001G051200 Sobic001G051200 Sobic003G344900--Sobic001G051200 Sobic001G199100 Sobic001G199100 Sobic003G012200--Sobic001G199100 Sobic003G012200--Sobic003G344900 Sobic003G012200--Sobic010G000900 Sobic001G085100 Sobic001G085100 Sobic003G012200--Sobic001G085100 Sobic003G012200--Sobic004G348300 Sobic009G075800 Sobic009G075800 Sobic003G012200--Sobic009G075800 Sobic004G275700 Sobic004G275700 Sobic003G012200--Sobic004G275700 Sobic003G012200--Sobic009G259400 Sobic003G012200--Sobic001G047400 Sobic002G400000 Sobic002G400000 Sobic010G000900--Sobic002G400000 Sobic010G000900--Sobic003G012200 Sobic010G000900--Sobic001G047400 Sobic003G261400 Sobic003G261400 Sobic010G000900--Sobic003G261400 Sobic004G130900 Sobic004G130900 Sobic010G000900--Sobic004G130900 Sobic010G000900--Sobic001G051200 Sobic001G323000 Sobic001G323000 Sobic010G000900--Sobic001G323000 Sobic001G388200 Sobic001G388200 Sobic010G000900--Sobic001G388200 Sobic010G000900--Sobic001G085100 Sobic004G348300--Sobic003G012200 Sobic004G348300--Sobic003G344900 Sobic004G348300--Sobic001G199100 Sobic002G352600 Sobic002G352600 Sobic004G348300--Sobic002G352600 Sobic006G249700 Sobic006G249700 Sobic004G348300--Sobic006G249700 Sobic004G006200 Sobic004G006200 Sobic004G348300--Sobic004G006200 Sobic002G059300 Sobic002G059300 Sobic004G348300--Sobic002G059300 Sobic009G217100 Sobic009G217100 Sobic004G348300--Sobic009G217100 Sobic005G004200 Sobic005G004200 Sobic004G348300--Sobic005G004200 Sobic004G121100 Sobic004G121100 Sobic009G259400--Sobic004G121100 Sobic002G395801 Sobic002G395801 Sobic009G259400--Sobic002G395801 Sobic009G259400--Sobic003G012200 Sobic009G259400--Sobic009G217100 Sobic003G063000 Sobic003G063000 Sobic009G259400--Sobic003G063000 Sobic010G251000 Sobic010G251000 Sobic009G259400--Sobic010G251000 Sobic006G200600 Sobic006G200600 Sobic009G259400--Sobic006G200600 Sobic001G281600 Sobic001G281600 Sobic009G259400--Sobic001G281600 Sobic008G179700 Sobic008G179700 Sobic009G259400--Sobic008G179700 Sobic004G358600 Sobic004G358600 Sobic005G044800--Sobic004G358600 Sobic005G044800--Sobic003G012200 Sobic003G372000 Sobic003G372000 Sobic005G044800--Sobic003G372000 Sobic006G244700 Sobic006G244700 Sobic005G044800--Sobic006G244700 Sobic005G044800--Sobic003G344900 Sobic004G127700 Sobic004G127700 Sobic005G044800--Sobic004G127700 Sobic002G116900 Sobic002G116900 Sobic005G044800--Sobic002G116900 Sobic003G273600 Sobic003G273600 Sobic005G044800--Sobic003G273600 Sobic003G055700 Sobic003G055700 Sobic005G044800--Sobic003G055700 Sobic007G007000 Sobic007G007000 Sobic001G123000--Sobic007G007000 Sobic001G123000--Sobic009G259400 Sobic001G123000--Sobic003G344900 Sobic001G120300 Sobic001G120300 Sobic001G123000--Sobic001G120300 Sobic001G098200 Sobic001G098200 Sobic001G123000--Sobic001G098200 Sobic010G090900 Sobic010G090900 Sobic001G123000--Sobic010G090900 Sobic006G114500 Sobic006G114500 Sobic001G123000--Sobic006G114500 Sobic005G091600 Sobic005G091600 Sobic001G123000--Sobic005G091600 Sobic007G177000 Sobic007G177000 Sobic001G123000--Sobic007G177000 Sobic001G047400--Sobic002G116900 Sobic009G165800 Sobic009G165800 Sobic001G047400--Sobic009G165800 Sobic001G047400--Sobic010G000900 Sobic001G047400--Sobic001G085100 Sobic001G047400--Sobic010G251000 Sobic003G015900 Sobic003G015900 Sobic001G047400--Sobic003G015900 Sobic001G047400--Sobic001G051200 Sobic001G261436 Sobic001G261436 Sobic001G047400--Sobic001G261436 Sobic009G228700 Sobic009G228700 Sobic001G047400--Sobic009G228700 Sobic009G222500 Sobic009G222500 Sobic001G181700--Sobic009G222500 Sobic003G370900 Sobic003G370900 Sobic001G181700--Sobic003G370900 Sobic001G080700 Sobic001G080700 Sobic001G181700--Sobic001G080700 Sobic001G181700--Sobic009G165800 Sobic001G181700--Sobic003G012200 Sobic001G181700--Sobic003G344900 Sobic002G110700 Sobic002G110700 Sobic001G181700--Sobic002G110700 Sobic001G181700--Sobic004G348300 Sobic001G181700--Sobic002G352600 Sobic001G051200--Sobic003G015900 Sobic003G007500 Sobic003G007500 Sobic001G051200--Sobic003G007500 Sobic001G051200--Sobic003G261400 Sobic001G051200--Sobic001G047400 Sobic001G051200--Sobic010G000900 Sobic007G168600 Sobic007G168600 Sobic001G051200--Sobic007G168600 Sobic010G058500 Sobic010G058500 Sobic001G051200--Sobic010G058500 Sobic001G051200--Sobic002G400000 Sobic010G168600 Sobic010G168600 Sobic001G051200--Sobic010G168600
Octagon: transcription factors


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