Gene annotation
Transcriptome id Sobic.003G155900.1
Synonym Sb03g013600, AMSH3
Functional annotation mov34/MPN/PAD-1 family protein, expressed
UniProt C5XJT4
Pfam PF08969 PF01398
Panther DB PTHR12947 PTHR12947:SF11
NCBI CDD KOG2880; SMAD6 interacting protein AMSH, contains JAB/MPN/Mov34 domain
KEGG Orthology K11866; STAMBP, STAM-binding protein
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT4G16144 : associated molecule with the SH3 domain of STAM 3
RAP-DB (Rice) LOC_Os01g23640.1 : mov34/MPN/PAD-1 family protein, expressed
MaizeGDB (Corn) Zm00025a036186 , Zm00025a024461 , Zm00025a036367
Brachypodium KQK04454 , KQK04236 , PNT70562
Barley HORVU3Hr1G043440.18 , HORVU3Hr1G043440.19 , HORVU3Hr1G043440.13 , HORVU3Hr1G043440.10 , HORVU3Hr1G043440.11 , HORVU3Hr1G043440.16 , HORVU3Hr1G043440.17 , HORVU3Hr1G043440.14 , HORVU3Hr1G043440.15 , HORVU3Hr1G043440.1 , HORVU3Hr1G043440.2 , HORVU3Hr1G043440.4 , HORVU3Hr1G043440.5 , HORVU3Hr1G043440.7 , HORVU3Hr1G043440.8 , HORVU3Hr1G043440.9 , HORVU3Hr1G043440.6
Wheat TraesCS3B02G223600 , TraesCS3D02G199200 , TraesCS3D02G199200 , TraesCS3A02G192900 , TraesCS3A02G192900 , TraesCS3A02G192900
Populus -


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cDNA sequences
Sobic.003G155900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G352200 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
2 Sobic.007G163100 expressed protein K14972: PAXIP1, PAX-interacting protein 1
3 Sobic.001G124200 ethylene receptor, putative, expressed K14509: ETR, ethylene receptor
4 Sobic.006G012500 protein transport protein Sec24-like, putative, expressed K14007: protein transport protein SEC24
5 Sobic.001G392300 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12820: DHX15, pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43
6 Sobic.002G262900 farnesyltransferase/geranylgeranyltransferase type-1 subunitalpha, putative, expressed K05955: protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha
7 Sobic.010G205800 palmitoyltransferase TIP1, putative, expressed K18932: palmitoyltransferase
8 Sobic.003G422900 RNA recognition motif containing protein, putative, expressed K14411: RNA-binding protein Musashi
9 Sobic.002G045600 transcriptional corepressor SEUSS, putative, expressed -
10 Sobic.009G044800 cullin, putative, expressed K03347: CUL1, cullin 1
11 Sobic.008G118200 vesicle tethering family protein, putative, expressed -
12 Sobic.008G099800 expressed protein -
13 Sobic.002G371300 peroxisome assembly protein, putative, expressed K13346: peroxin-10
14 Sobic.003G118200 phosphoadenosine phosphosulfate, putative, expressed -
15 Sobic.003G408600 GYF domain containing protein, putative, expressed K18730: PERQ amino acid-rich with GYF domain-containing protein
16 Sobic.001G493200 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
17 Sobic.007G132100 myrosinase precursor, putative, expressed -
18 Sobic.004G066200 ubiquitin fusion degradation protein, putative, expressed K14016: ubiquitin fusion degradation protein 1
19 Sobic.001G313700 expressed protein -
20 Sobic.004G039600 proteasome/cyclosome repeat containing protein, expressed K03028: PSMD2, 26S proteasome regulatory subunit N1


Gene co-expression network
sample Sobic003G155900 Sobic003G155900 Sobic003G352200 Sobic003G352200 Sobic003G155900--Sobic003G352200 Sobic007G163100 Sobic007G163100 Sobic003G155900--Sobic007G163100 Sobic001G124200 Sobic001G124200 Sobic003G155900--Sobic001G124200 Sobic006G012500 Sobic006G012500 Sobic003G155900--Sobic006G012500 Sobic001G392300 Sobic001G392300 Sobic003G155900--Sobic001G392300 Sobic002G262900 Sobic002G262900 Sobic003G155900--Sobic002G262900 Sobic010G205800 Sobic010G205800 Sobic003G155900--Sobic010G205800 Sobic003G422900 Sobic003G422900 Sobic003G155900--Sobic003G422900 Sobic002G045600 Sobic002G045600 Sobic003G155900--Sobic002G045600 Sobic009G044800 Sobic009G044800 Sobic003G352200--Sobic009G044800 Sobic001G473600 Sobic001G473600 Sobic003G352200--Sobic001G473600 Sobic002G034600 Sobic002G034600 Sobic003G352200--Sobic002G034600 Sobic004G274200 Sobic004G274200 Sobic003G352200--Sobic004G274200 Sobic003G352200--Sobic003G155900 Sobic004G066200 Sobic004G066200 Sobic003G352200--Sobic004G066200 Sobic003G352200--Sobic002G045600 Sobic001G109800 Sobic001G109800 Sobic003G352200--Sobic001G109800 Sobic001G088100 Sobic001G088100 Sobic003G352200--Sobic001G088100 Sobic003G408600 Sobic003G408600 Sobic007G163100--Sobic003G408600 Sobic008G118200 Sobic008G118200 Sobic007G163100--Sobic008G118200 Sobic007G163100--Sobic002G045600 Sobic001G117200 Sobic001G117200 Sobic007G163100--Sobic001G117200 Sobic003G072200 Sobic003G072200 Sobic007G163100--Sobic003G072200 Sobic003G422500 Sobic003G422500 Sobic007G163100--Sobic003G422500 Sobic001G540400 Sobic001G540400 Sobic007G163100--Sobic001G540400 Sobic001G289800 Sobic001G289800 Sobic007G163100--Sobic001G289800 Sobic004G113400 Sobic004G113400 Sobic007G163100--Sobic004G113400 Sobic001G124200--Sobic010G205800 Sobic010G020300 Sobic010G020300 Sobic001G124200--Sobic010G020300 Sobic001G124200--Sobic003G155900 Sobic004G039600 Sobic004G039600 Sobic001G124200--Sobic004G039600 Sobic010G278200 Sobic010G278200 Sobic001G124200--Sobic010G278200 Sobic007G132100 Sobic007G132100 Sobic001G124200--Sobic007G132100 Sobic009G138100 Sobic009G138100 Sobic001G124200--Sobic009G138100 Sobic001G390800 Sobic001G390800 Sobic001G124200--Sobic001G390800 Sobic009G228700 Sobic009G228700 Sobic001G124200--Sobic009G228700 Sobic006G012500--Sobic004G039600 Sobic010G053800 Sobic010G053800 Sobic006G012500--Sobic010G053800 Sobic008G099800 Sobic008G099800 Sobic006G012500--Sobic008G099800 Sobic010G275500 Sobic010G275500 Sobic006G012500--Sobic010G275500 Sobic004G072100 Sobic004G072100 Sobic006G012500--Sobic004G072100 Sobic001G534800 Sobic001G534800 Sobic006G012500--Sobic001G534800 Sobic001G065000 Sobic001G065000 Sobic006G012500--Sobic001G065000 Sobic006G012500--Sobic007G132100 Sobic007G218000 Sobic007G218000 Sobic006G012500--Sobic007G218000 Sobic001G080700 Sobic001G080700 Sobic001G392300--Sobic001G080700 Sobic007G061000 Sobic007G061000 Sobic001G392300--Sobic007G061000 Sobic009G177500 Sobic009G177500 Sobic001G392300--Sobic009G177500 Sobic004G353200 Sobic004G353200 Sobic001G392300--Sobic004G353200 Sobic001G007000 Sobic001G007000 Sobic001G392300--Sobic001G007000 Sobic007G075900 Sobic007G075900 Sobic001G392300--Sobic007G075900 Sobic001G392300--Sobic009G044800 Sobic008G047800 Sobic008G047800 Sobic001G392300--Sobic008G047800 Sobic006G200600 Sobic006G200600 Sobic001G392300--Sobic006G200600 Sobic002G008800 Sobic002G008800 Sobic002G262900--Sobic002G008800 Sobic004G275700 Sobic004G275700 Sobic002G262900--Sobic004G275700 Sobic010G164000 Sobic010G164000 Sobic002G262900--Sobic010G164000 Sobic006G136400 Sobic006G136400 Sobic002G262900--Sobic006G136400 Sobic002G262900--Sobic004G039600 Sobic002G262900--Sobic010G205800 Sobic010G261600 Sobic010G261600 Sobic002G262900--Sobic010G261600 Sobic002G262900--Sobic003G155900 Sobic002G262900--Sobic001G124200 Sobic001G121200 Sobic001G121200 Sobic010G205800--Sobic001G121200 Sobic010G205800--Sobic001G390800 Sobic010G205800--Sobic001G124200 Sobic010G205800--Sobic001G007000 Sobic001G000200 Sobic001G000200 Sobic010G205800--Sobic001G000200 Sobic010G205800--Sobic002G262900 Sobic010G205800--Sobic004G274200 Sobic006G199200 Sobic006G199200 Sobic010G205800--Sobic006G199200 Sobic001G079200 Sobic001G079200 Sobic010G205800--Sobic001G079200 Sobic010G020400 Sobic010G020400 Sobic003G422900--Sobic010G020400 Sobic003G422900--Sobic003G155900 Sobic002G303600 Sobic002G303600 Sobic003G422900--Sobic002G303600 Sobic009G164000 Sobic009G164000 Sobic003G422900--Sobic009G164000 Sobic003G422900--Sobic009G044800 Sobic003G422900--Sobic001G392300 Sobic004G257100 Sobic004G257100 Sobic003G422900--Sobic004G257100 Sobic002G256200 Sobic002G256200 Sobic003G422900--Sobic002G256200 Sobic008G082500 Sobic008G082500 Sobic003G422900--Sobic008G082500 Sobic002G045600--Sobic003G408600 Sobic009G027300 Sobic009G027300 Sobic002G045600--Sobic009G027300 Sobic002G045600--Sobic009G044800 Sobic002G045600--Sobic007G163100 Sobic003G360400 Sobic003G360400 Sobic002G045600--Sobic003G360400 Sobic001G313700 Sobic001G313700 Sobic002G045600--Sobic001G313700 Sobic004G200200 Sobic004G200200 Sobic002G045600--Sobic004G200200 Sobic001G207000 Sobic001G207000 Sobic002G045600--Sobic001G207000 Sobic002G045600--Sobic003G422500
Octagon: transcription factors


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