Gene annotation
Transcriptome id Sobic.003G365300.1
Synonym Sb03g040700, SNX1, ATSNX1
Functional annotation sorting nexin 1, putative, expressed
UniProt C5XQK2
Pfam PF09325 PF00787
Panther DB PTHR10555 PTHR10555:SF122
NCBI CDD KOG2273; Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins
KEGG Orthology K17917; sorting nexin-1/2
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G06140 : sorting nexin 1
RAP-DB (Rice) LOC_Os01g64280.1 : sorting nexin 1, putative, expressed
MaizeGDB (Corn) Zm00025a039578 , Zm00025a026749
Brachypodium KQK10725 , KQK10724
Barley HORVU3Hr1G083780.12 , HORVU3Hr1G083780.11 , HORVU3Hr1G083780.10 , HORVU3Hr1G083780.7 , HORVU3Hr1G083780.2 , HORVU3Hr1G083780.9
Wheat TraesCS3D02G367700 , TraesCS3D02G367700 , TraesCS3B02G407400 , TraesCS3B02G407400 , TraesCS3A02G375200 , TraesCS3A02G375200 , TraesCS3A02G375200 , TraesCS3A02G375200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G390800 transcription factor HBP-1b, putative, expressed K14431: transcription factor TGA
2 Sobic.006G002000 phosphoglycerate mutase, putative, expressed -
3 Sobic.006G082400 expressed protein -
4 Sobic.004G275700 adaptor complexes medium subunit family domain containing protein, expressed K11826: AP-2 complex subunit mu-1
5 Sobic.002G111000 peptidase, putative, expressed -
6 Sobic.001G203900 OsGrx_S17 - glutaredoxin subgroup II, expressed -
7 Sobic.009G068500 expressed protein -
8 Sobic.003G006300 expressed protein -
9 Sobic.001G107600 - K18328: lariat debranching enzyme
10 Sobic.001G007000 -(PubMedID : 26976818)@4-nitrophenylphosphatase, putative, expressed K19269: PGP, phosphoglycolate phosphatase
11 Sobic.010G131900 Zinc finger C-x8-C-x5-C-x3-H type domain containing protein, expressed K15687: E3 ubiquitin-protein ligase makorin
12 Sobic.010G147100 VHS and GAT domain containing protein, expressed -
13 Sobic.010G228400 zinc finger, C3HC4 type, domain containing protein, expressed -
14 Sobic.003G195000 OsFtsH5 FtsH protease, homologue of AtFtsH4, expressed K08955: ATP-dependent metalloprotease
15 Sobic.010G139600 STE_PAK_Ste20_STLK.5 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K08835: OXSR1, serine/threonine-protein kinase OSR1/STK39
16 Sobic.007G075400 expressed protein -
17 Sobic.001G121200 zinc finger, C3HC4 type domain containing protein, expressed -
18 Sobic.002G262900 farnesyltransferase/geranylgeranyltransferase type-1 subunitalpha, putative, expressed K05955: protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha
19 Sobic.001G207400 katanin p80 WD40 repeat-containing subunit B1 homolog 1, putative, expressed K18643: katanin p80 WD40 repeat-containing subunit B1
20 Sobic.009G113000 chaperone protein dnaJ 49, putative, expressed K09518: DnaJ homolog subfamily B member 12


Gene co-expression network
sample Sobic003G365300 Sobic003G365300 Sobic001G390800 Sobic001G390800 Sobic003G365300--Sobic001G390800 Sobic006G002000 Sobic006G002000 Sobic003G365300--Sobic006G002000 Sobic006G082400 Sobic006G082400 Sobic003G365300--Sobic006G082400 Sobic004G275700 Sobic004G275700 Sobic003G365300--Sobic004G275700 Sobic002G111000 Sobic002G111000 Sobic003G365300--Sobic002G111000 Sobic001G203900 Sobic001G203900 Sobic003G365300--Sobic001G203900 Sobic009G068500 Sobic009G068500 Sobic003G365300--Sobic009G068500 Sobic003G006300 Sobic003G006300 Sobic003G365300--Sobic003G006300 Sobic001G107600 Sobic001G107600 Sobic003G365300--Sobic001G107600 Sobic001G268200 Sobic001G268200 Sobic001G390800--Sobic001G268200 Sobic001G121200 Sobic001G121200 Sobic001G390800--Sobic001G121200 Sobic003G313500 Sobic003G313500 Sobic001G390800--Sobic003G313500 Sobic010G205800 Sobic010G205800 Sobic001G390800--Sobic010G205800 Sobic001G085300 Sobic001G085300 Sobic001G390800--Sobic001G085300 Sobic010G147100 Sobic010G147100 Sobic001G390800--Sobic010G147100 Sobic007G075400 Sobic007G075400 Sobic001G390800--Sobic007G075400 Sobic010G139600 Sobic010G139600 Sobic001G390800--Sobic010G139600 Sobic001G050200 Sobic001G050200 Sobic001G390800--Sobic001G050200 Sobic006G002000--Sobic003G365300 Sobic006G002000--Sobic010G139600 Sobic007G133700 Sobic007G133700 Sobic006G002000--Sobic007G133700 Sobic006G002000--Sobic003G006300 Sobic008G098900 Sobic008G098900 Sobic006G002000--Sobic008G098900 Sobic006G002000--Sobic007G075400 Sobic010G072400 Sobic010G072400 Sobic006G002000--Sobic010G072400 Sobic006G087700 Sobic006G087700 Sobic006G002000--Sobic006G087700 Sobic003G198800 Sobic003G198800 Sobic006G002000--Sobic003G198800 Sobic006G082400--Sobic003G365300 Sobic006G082400--Sobic001G390800 Sobic006G082400--Sobic010G205800 Sobic002G430000 Sobic002G430000 Sobic006G082400--Sobic002G430000 Sobic006G082400--Sobic007G075400 Sobic003G422500 Sobic003G422500 Sobic006G082400--Sobic003G422500 Sobic008G132600 Sobic008G132600 Sobic006G082400--Sobic008G132600 Sobic006G082400--Sobic007G133700 Sobic002G270500 Sobic002G270500 Sobic006G082400--Sobic002G270500 Sobic001G199100 Sobic001G199100 Sobic004G275700--Sobic001G199100 Sobic001G091300 Sobic001G091300 Sobic004G275700--Sobic001G091300 Sobic009G075800 Sobic009G075800 Sobic004G275700--Sobic009G075800 Sobic002G262900 Sobic002G262900 Sobic004G275700--Sobic002G262900 Sobic001G007000 Sobic001G007000 Sobic004G275700--Sobic001G007000 Sobic010G020400 Sobic010G020400 Sobic004G275700--Sobic010G020400 Sobic002G008800 Sobic002G008800 Sobic004G275700--Sobic002G008800 Sobic004G275700--Sobic003G365300 Sobic003G012200 Sobic003G012200 Sobic004G275700--Sobic003G012200 Sobic001G207400 Sobic001G207400 Sobic002G111000--Sobic001G207400 Sobic002G111000--Sobic001G390800 Sobic001G016700 Sobic001G016700 Sobic002G111000--Sobic001G016700 Sobic002G111000--Sobic001G121200 Sobic002G111000--Sobic003G365300 Sobic002G111000--Sobic002G430000 Sobic002G111000--Sobic010G139600 Sobic002G111000--Sobic010G147100 Sobic001G137100 Sobic001G137100 Sobic002G111000--Sobic001G137100 Sobic001G203900--Sobic003G365300 Sobic010G131900 Sobic010G131900 Sobic001G203900--Sobic010G131900 Sobic002G226900 Sobic002G226900 Sobic001G203900--Sobic002G226900 Sobic001G203900--Sobic001G199100 Sobic008G093000 Sobic008G093000 Sobic001G203900--Sobic008G093000 Sobic001G203900--Sobic003G012200 Sobic001G203900--Sobic003G006300 Sobic001G203900--Sobic004G275700 Sobic001G203900--Sobic009G068500 Sobic009G068500--Sobic001G007000 Sobic001G193300 Sobic001G193300 Sobic009G068500--Sobic001G193300 Sobic003G264100 Sobic003G264100 Sobic009G068500--Sobic003G264100 Sobic007G093800 Sobic007G093800 Sobic009G068500--Sobic007G093800 Sobic009G068500--Sobic003G006300 Sobic009G068500--Sobic003G365300 Sobic002G359400 Sobic002G359400 Sobic009G068500--Sobic002G359400 Sobic009G068500--Sobic010G020400 Sobic010G251000 Sobic010G251000 Sobic009G068500--Sobic010G251000 Sobic003G006300--Sobic009G068500 Sobic003G006300--Sobic003G365300 Sobic001G263600 Sobic001G263600 Sobic003G006300--Sobic001G263600 Sobic003G195000 Sobic003G195000 Sobic003G006300--Sobic003G195000 Sobic003G006300--Sobic001G007000 Sobic003G006300--Sobic003G264100 Sobic003G404500 Sobic003G404500 Sobic003G006300--Sobic003G404500 Sobic003G006300--Sobic002G359400 Sobic003G006300--Sobic010G131900 Sobic001G107600--Sobic001G050200 Sobic010G228400 Sobic010G228400 Sobic001G107600--Sobic010G228400 Sobic001G107600--Sobic001G390800 Sobic001G107600--Sobic003G365300 Sobic006G115600 Sobic006G115600 Sobic001G107600--Sobic006G115600 Sobic004G264400 Sobic004G264400 Sobic001G107600--Sobic004G264400 Sobic002G427050 Sobic002G427050 Sobic001G107600--Sobic002G427050 Sobic003G372500 Sobic003G372500 Sobic001G107600--Sobic003G372500 Sobic010G227100 Sobic010G227100 Sobic001G107600--Sobic010G227100
Octagon: transcription factors


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