Gene annotation
Transcriptome id Sobic.003G195500.1
Synonym RHD3, Sb03g025850
Functional annotation SEY1, putative, expressed
UniProt C5XNS8
Pfam PF05879
Panther DB PTHR11649:SF62 PTHR11649
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G13870 : Root hair defective 3 GTP-binding protein (RHD3)
RAP-DB (Rice) LOC_Os01g39310.1 : SEY1, putative, expressed
MaizeGDB (Corn) Zm00025a018445 , Zm00025a028458 , Zm00025a044731 , Zm00025a038395
Brachypodium PNT72230 , KQK08394 , KQK08393
Barley HORVU3Hr1G049960.9 , HORVU3Hr1G049960.8 , HORVU3Hr1G049960.5 , HORVU3Hr1G049960.4 , HORVU3Hr1G049960.7 , HORVU3Hr1G049960.6 , HORVU3Hr1G049960.1 , HORVU3Hr1G049960.3 , HORVU3Hr1G049960.2 , HORVU3Hr1G049960.19 , HORVU3Hr1G049960.18 , HORVU3Hr1G049960.11 , HORVU3Hr1G049960.10 , HORVU3Hr1G049960.20 , HORVU3Hr1G049960.21 , HORVU3Hr1G049960.13 , HORVU3Hr1G049960.12 , HORVU3Hr1G049960.15 , HORVU3Hr1G049960.14 , HORVU3Hr1G049960.17 , HORVU3Hr1G049960.16
Wheat TraesCS3B02G237000 , TraesCS3D02G210500 , TraesCS3D02G210500 , TraesCS3A02G204900 , TraesCS1A02G003200
Populus PNT55596 , PNT55597 , PNT55595


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cDNA sequences
Sobic.003G195500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G065000 expressed protein -
2 Sobic.006G012500 protein transport protein Sec24-like, putative, expressed K14007: protein transport protein SEC24
3 Sobic.001G534800 Putative ortholog gene associated with awn presence/absence in wheat(PubMedID : 25237112)@adapitin protein, putative, expressed K11824: AP-2 complex subunit alpha
4 Sobic.004G039600 proteasome/cyclosome repeat containing protein, expressed K03028: PSMD2, 26S proteasome regulatory subunit N1
5 Sobic.004G178200 ligatin, putative, expressed K15027: translation initiation factor 2D
6 Sobic.001G281100 START domain containing protein, expressed -
7 Sobic.004G146500 ataxin-2 related protein, putative, expressed -
8 Sobic.007G119200 intracellular protein transport protein USO1-related, putative, expressed -
9 Sobic.006G131000 expressed protein K11968: ariadne-1
10 Sobic.010G053800 AP-1 complex subunit gamma-1, putative, expressed K12391: AP-1 complex subunit gamma-1
11 Sobic.001G109800 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C member, putative, expressed K11649: SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C
12 Sobic.004G264400 TBC domain containing protein, expressed -
13 Sobic.004G002400 expressed protein -
14 Sobic.006G163800 diacylglycerol kinase, putative, expressed -
15 Sobic.001G369000 adapitin protein, putative, expressed K12392: AP-1 complex subunit beta-1
16 Sobic.004G269200 protein kinase, putative, expressed K18670: dual specificity protein kinase YAK1
17 Sobic.006G126100 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
18 Sobic.008G099800 expressed protein -
19 Sobic.010G116600 FHA domain containing protein, putative, expressed -
20 Sobic.007G218000 chloride transporter, chloride channel family, putative, expressed -


Gene co-expression network
sample Sobic003G195500 Sobic003G195500 Sobic001G065000 Sobic001G065000 Sobic003G195500--Sobic001G065000 Sobic006G012500 Sobic006G012500 Sobic003G195500--Sobic006G012500 Sobic001G534800 Sobic001G534800 Sobic003G195500--Sobic001G534800 Sobic004G039600 Sobic004G039600 Sobic003G195500--Sobic004G039600 Sobic004G178200 Sobic004G178200 Sobic003G195500--Sobic004G178200 Sobic001G281100 Sobic001G281100 Sobic003G195500--Sobic001G281100 Sobic004G146500 Sobic004G146500 Sobic003G195500--Sobic004G146500 Sobic007G119200 Sobic007G119200 Sobic003G195500--Sobic007G119200 Sobic006G131000 Sobic006G131000 Sobic003G195500--Sobic006G131000 Sobic001G114000 Sobic001G114000 Sobic001G065000--Sobic001G114000 Sobic001G065000--Sobic001G281100 Sobic001G065000--Sobic006G012500 Sobic001G065000--Sobic001G534800 Sobic005G118600 Sobic005G118600 Sobic001G065000--Sobic005G118600 Sobic008G099800 Sobic008G099800 Sobic001G065000--Sobic008G099800 Sobic003G093800 Sobic003G093800 Sobic001G065000--Sobic003G093800 Sobic006G037700 Sobic006G037700 Sobic001G065000--Sobic006G037700 Sobic003G229500 Sobic003G229500 Sobic001G065000--Sobic003G229500 Sobic006G012500--Sobic004G039600 Sobic010G053800 Sobic010G053800 Sobic006G012500--Sobic010G053800 Sobic006G012500--Sobic008G099800 Sobic010G275500 Sobic010G275500 Sobic006G012500--Sobic010G275500 Sobic004G072100 Sobic004G072100 Sobic006G012500--Sobic004G072100 Sobic006G012500--Sobic001G534800 Sobic006G012500--Sobic001G065000 Sobic007G132100 Sobic007G132100 Sobic006G012500--Sobic007G132100 Sobic007G218000 Sobic007G218000 Sobic006G012500--Sobic007G218000 Sobic001G534800--Sobic001G281100 Sobic001G534800--Sobic008G099800 Sobic004G004300 Sobic004G004300 Sobic001G534800--Sobic004G004300 Sobic004G135400 Sobic004G135400 Sobic001G534800--Sobic004G135400 Sobic005G003300 Sobic005G003300 Sobic001G534800--Sobic005G003300 Sobic005G026200 Sobic005G026200 Sobic001G534800--Sobic005G026200 Sobic001G534800--Sobic006G012500 Sobic004G113400 Sobic004G113400 Sobic001G534800--Sobic004G113400 Sobic001G534800--Sobic001G065000 Sobic004G039600--Sobic006G012500 Sobic001G369000 Sobic001G369000 Sobic004G039600--Sobic001G369000 Sobic004G039600--Sobic007G132100 Sobic004G039600--Sobic008G099800 Sobic006G126100 Sobic006G126100 Sobic004G039600--Sobic006G126100 Sobic004G039600--Sobic010G053800 Sobic004G039600--Sobic006G131000 Sobic004G039600--Sobic001G534800 Sobic007G120500 Sobic007G120500 Sobic004G039600--Sobic007G120500 Sobic004G178200--Sobic007G132100 Sobic004G178200--Sobic007G218000 Sobic006G136400 Sobic006G136400 Sobic004G178200--Sobic006G136400 Sobic004G178200--Sobic006G131000 Sobic004G178200--Sobic006G126100 Sobic004G178200--Sobic006G012500 Sobic010G116600 Sobic010G116600 Sobic004G178200--Sobic010G116600 Sobic002G303600 Sobic002G303600 Sobic004G178200--Sobic002G303600 Sobic004G178200--Sobic004G039600 Sobic001G281100--Sobic001G534800 Sobic001G281100--Sobic004G004300 Sobic001G281100--Sobic001G065000 Sobic001G281100--Sobic005G026200 Sobic001G281100--Sobic008G099800 Sobic001G281100--Sobic003G229500 Sobic001G281100--Sobic006G012500 Sobic001G281100--Sobic004G072100 Sobic001G281100--Sobic010G275500 Sobic001G109800 Sobic001G109800 Sobic004G146500--Sobic001G109800 Sobic010G069100 Sobic010G069100 Sobic004G146500--Sobic010G069100 Sobic002G297200 Sobic002G297200 Sobic004G146500--Sobic002G297200 Sobic004G146500--Sobic007G119200 Sobic004G274200 Sobic004G274200 Sobic004G146500--Sobic004G274200 Sobic001G220300 Sobic001G220300 Sobic004G146500--Sobic001G220300 Sobic001G155000 Sobic001G155000 Sobic004G146500--Sobic001G155000 Sobic002G034600 Sobic002G034600 Sobic004G146500--Sobic002G034600 Sobic008G047800 Sobic008G047800 Sobic004G146500--Sobic008G047800 Sobic007G119200--Sobic002G034600 Sobic007G119200--Sobic004G146500 Sobic008G153000 Sobic008G153000 Sobic007G119200--Sobic008G153000 Sobic007G119200--Sobic001G109800 Sobic007G041500 Sobic007G041500 Sobic007G119200--Sobic007G041500 Sobic007G119200--Sobic010G069100 Sobic007G119200--Sobic007G218000 Sobic002G264200 Sobic002G264200 Sobic007G119200--Sobic002G264200 Sobic001G088100 Sobic001G088100 Sobic007G119200--Sobic001G088100 Sobic006G131000--Sobic007G218000 Sobic006G131000--Sobic007G132100 Sobic006G163800 Sobic006G163800 Sobic006G131000--Sobic006G163800 Sobic006G131000--Sobic004G039600 Sobic001G096000 Sobic001G096000 Sobic006G131000--Sobic001G096000 Sobic006G174850 Sobic006G174850 Sobic006G131000--Sobic006G174850 Sobic006G131000--Sobic010G275500 Sobic006G131000--Sobic001G369000 Sobic006G131000--Sobic004G178200
Octagon: transcription factors


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