Gene annotation
Transcriptome id Sobic.009G249700.1,Sobic.009G249700.2
Synonym Sb09g030030
Functional annotation expressed protein
UniProt A0A1Z5R4N1 , C5YWI7
Pfam PF00995
Panther DB PTHR11679 PTHR11679:SF29
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016192; vesicle-mediated transport GO:0006904vesicle docking involved in exocytosis


Orthologs (automatic annotation)
TAIR AT2G42700 : -
RAP-DB (Rice) LOC_Os11g06810.1 : expressed protein
MaizeGDB (Corn) Zm00025a004616 , Zm00025a013081 , Zm00025a044791 , Zm00025a033155 , Zm00025a006425 , Zm00025a041180
Brachypodium KQJ89214
Barley HORVU4Hr1G019910.6 , HORVU4Hr1G019910.7 , HORVU4Hr1G019910.4 , HORVU4Hr1G019910.5 , HORVU4Hr1G019910.2 , HORVU4Hr1G019910.3 , HORVU4Hr1G019910.1 , HORVU4Hr1G019910.8 , HORVU4Hr1G019910.9 , HORVU4Hr1G019910.10 , HORVU4Hr1G019910.11 , HORVU4Hr1G019910.12
Wheat TraesCS4A02G207700 , TraesCS4D02G108900 , TraesCS4B02G111200
Populus -


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cDNA sequences
Sobic.009G249700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G218000 chloride transporter, chloride channel family, putative, expressed -
2 Sobic.003G093800 - K03254: translation initiation factor 3 subunit A
3 Sobic.003G189600 M16 domain containing zinc peptidase, putative, expressed -
4 Sobic.003G394200 vacuolar protein sorting-associated protein 53, putative, expressed -
5 Sobic.005G034700 PHD-finger family protein, expressed -
6 Sobic.004G345400 WD domain, G-beta repeat domain containing protein, expressed K05757: actin related protein 2/3 complex, subunit 1A/1B
7 Sobic.010G169900 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
8 Sobic.003G444800 expressed protein -
9 Sobic.007G042900 BSD domain-containing protein, putative, expressed K03141: TFIIH1, GTF2H1, transcription initiation factor TFIIH subunit 1
10 Sobic.006G224800 expressed protein -
11 Sobic.009G092400 zinc finger, C3HC4 type family protein, expressed -
12 Sobic.007G042400 HEAT repeat family protein, putative, expressed -
13 Sobic.006G174850 - K15193: SPTY2D1, protein SPT2
14 Sobic.001G308400 expressed protein -
15 Sobic.009G119000 tetratricopeptide repeat containing protein, putative, expressed K09527: DnaJ homolog subfamily C member 7
16 Sobic.001G042200 ATP/GTP/Ca++ binding protein, putative, expressed K07870: RHOT1, mitochondrial Rho GTPase 1
17 Sobic.006G012500 protein transport protein Sec24-like, putative, expressed K14007: protein transport protein SEC24
18 Sobic.001G263600 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
19 Sobic.010G116600 FHA domain containing protein, putative, expressed -
20 Sobic.006G077200 ubiquitin interaction motif-containing protein, putative, expressed -


Gene co-expression network
sample Sobic009G249700 Sobic009G249700 Sobic007G218000 Sobic007G218000 Sobic009G249700--Sobic007G218000 Sobic003G093800 Sobic003G093800 Sobic009G249700--Sobic003G093800 Sobic003G189600 Sobic003G189600 Sobic009G249700--Sobic003G189600 Sobic003G394200 Sobic003G394200 Sobic009G249700--Sobic003G394200 Sobic005G034700 Sobic005G034700 Sobic009G249700--Sobic005G034700 Sobic004G345400 Sobic004G345400 Sobic009G249700--Sobic004G345400 Sobic010G169900 Sobic010G169900 Sobic009G249700--Sobic010G169900 Sobic003G444800 Sobic003G444800 Sobic009G249700--Sobic003G444800 Sobic007G042900 Sobic007G042900 Sobic009G249700--Sobic007G042900 Sobic007G132100 Sobic007G132100 Sobic007G218000--Sobic007G132100 Sobic004G072100 Sobic004G072100 Sobic007G218000--Sobic004G072100 Sobic002G112700 Sobic002G112700 Sobic007G218000--Sobic002G112700 Sobic006G131000 Sobic006G131000 Sobic007G218000--Sobic006G131000 Sobic009G044800 Sobic009G044800 Sobic007G218000--Sobic009G044800 Sobic010G204400 Sobic010G204400 Sobic007G218000--Sobic010G204400 Sobic006G012500 Sobic006G012500 Sobic007G218000--Sobic006G012500 Sobic007G218000--Sobic009G249700 Sobic009G092400 Sobic009G092400 Sobic007G218000--Sobic009G092400 Sobic010G116600 Sobic010G116600 Sobic003G093800--Sobic010G116600 Sobic001G065000 Sobic001G065000 Sobic003G093800--Sobic001G065000 Sobic003G408600 Sobic003G408600 Sobic003G093800--Sobic003G408600 Sobic001G536400 Sobic001G536400 Sobic003G093800--Sobic001G536400 Sobic001G058700 Sobic001G058700 Sobic003G093800--Sobic001G058700 Sobic002G299700 Sobic002G299700 Sobic003G093800--Sobic002G299700 Sobic003G093800--Sobic009G044800 Sobic002G071500 Sobic002G071500 Sobic003G093800--Sobic002G071500 Sobic003G093800--Sobic009G249700 Sobic005G110499 Sobic005G110499 Sobic003G189600--Sobic005G110499 Sobic010G185400 Sobic010G185400 Sobic003G189600--Sobic010G185400 Sobic003G189600--Sobic007G218000 Sobic006G077200 Sobic006G077200 Sobic003G189600--Sobic006G077200 Sobic003G189600--Sobic003G394200 Sobic006G224800 Sobic006G224800 Sobic003G189600--Sobic006G224800 Sobic003G189600--Sobic009G249700 Sobic001G308400 Sobic001G308400 Sobic003G189600--Sobic001G308400 Sobic004G322400 Sobic004G322400 Sobic003G189600--Sobic004G322400 Sobic004G084500 Sobic004G084500 Sobic003G394200--Sobic004G084500 Sobic006G203300 Sobic006G203300 Sobic003G394200--Sobic006G203300 Sobic006G128100 Sobic006G128100 Sobic003G394200--Sobic006G128100 Sobic010G223400 Sobic010G223400 Sobic003G394200--Sobic010G223400 Sobic003G394200--Sobic001G308400 Sobic009G049400 Sobic009G049400 Sobic003G394200--Sobic009G049400 Sobic003G270600 Sobic003G270600 Sobic003G394200--Sobic003G270600 Sobic003G394200--Sobic003G189600 Sobic001G369000 Sobic001G369000 Sobic003G394200--Sobic001G369000 Sobic001G263600 Sobic001G263600 Sobic005G034700--Sobic001G263600 Sobic002G335600 Sobic002G335600 Sobic005G034700--Sobic002G335600 Sobic009G131300 Sobic009G131300 Sobic005G034700--Sobic009G131300 Sobic005G034700--Sobic009G249700 Sobic004G040500 Sobic004G040500 Sobic005G034700--Sobic004G040500 Sobic008G088872 Sobic008G088872 Sobic005G034700--Sobic008G088872 Sobic003G170700 Sobic003G170700 Sobic005G034700--Sobic003G170700 Sobic006G032300 Sobic006G032300 Sobic005G034700--Sobic006G032300 Sobic005G034700--Sobic003G093800 Sobic001G042200 Sobic001G042200 Sobic004G345400--Sobic001G042200 Sobic010G077500 Sobic010G077500 Sobic004G345400--Sobic010G077500 Sobic004G345400--Sobic009G249700 Sobic004G345400--Sobic007G042900 Sobic004G180900 Sobic004G180900 Sobic004G345400--Sobic004G180900 Sobic006G186400 Sobic006G186400 Sobic004G345400--Sobic006G186400 Sobic004G345400--Sobic004G084500 Sobic007G056500 Sobic007G056500 Sobic004G345400--Sobic007G056500 Sobic004G345400--Sobic003G394200 Sobic010G169900--Sobic001G308400 Sobic002G079000 Sobic002G079000 Sobic010G169900--Sobic002G079000 Sobic009G128500 Sobic009G128500 Sobic010G169900--Sobic009G128500 Sobic002G355800 Sobic002G355800 Sobic010G169900--Sobic002G355800 Sobic002G227500 Sobic002G227500 Sobic010G169900--Sobic002G227500 Sobic010G169900--Sobic006G128100 Sobic009G194000 Sobic009G194000 Sobic010G169900--Sobic009G194000 Sobic001G389200 Sobic001G389200 Sobic010G169900--Sobic001G389200 Sobic001G490900 Sobic001G490900 Sobic010G169900--Sobic001G490900 SobicK028600 SobicK028600 Sobic003G444800--SobicK028600 Sobic003G059750 Sobic003G059750 Sobic003G444800--Sobic003G059750 Sobic002G103600 Sobic002G103600 Sobic003G444800--Sobic002G103600 Sobic004G357100 Sobic004G357100 Sobic003G444800--Sobic004G357100 Sobic007G042400 Sobic007G042400 Sobic003G444800--Sobic007G042400 Sobic003G444800--Sobic002G112700 Sobic010G279450 Sobic010G279450 Sobic003G444800--Sobic010G279450 Sobic006G234700 Sobic006G234700 Sobic003G444800--Sobic006G234700 Sobic001G376200 Sobic001G376200 Sobic003G444800--Sobic001G376200 Sobic007G042900--Sobic004G345400 Sobic007G042900--Sobic009G249700 Sobic007G042900--Sobic001G042200 Sobic007G042900--Sobic005G110499 Sobic007G042900--Sobic010G169900 Sobic003G182300 Sobic003G182300 Sobic007G042900--Sobic003G182300 Sobic007G042900--Sobic003G394200 Sobic006G139100 Sobic006G139100 Sobic007G042900--Sobic006G139100 Sobic001G005600 Sobic001G005600 Sobic007G042900--Sobic001G005600
Octagon: transcription factors


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