Gene annotation
Transcriptome id Sobic.006G101700.1
Synonym ATUBP4, Sb06g018520, UBP4
Functional annotation ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed
UniProt C5Y9P6
Pfam PF00443
Panther DB PTHR24006 PTHR24006:SF434
NCBI CDD KOG1871; Ubiquitin-specific protease
KEGG Orthology K11842; ubiquitin carboxyl-terminal hydrolase 12/46
Gene Ontology GO:0016579; protein deubiquitination


Orthologs (automatic annotation)
TAIR AT2G22310 : ubiquitin-specific protease 4
RAP-DB (Rice) LOC_Os04g37950.1 : ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed
MaizeGDB (Corn) Zm00025a020786 , Zm00025a056180 , Zm00025a001038 , Zm00025a011157
Brachypodium KQJ82912 , KQK23193 , KQK00002
Barley HORVU6Hr1G050090.5 , HORVU6Hr1G050090.1 , HORVU4Hr1G078590.7 , HORVU4Hr1G078590.6 , HORVU4Hr1G078590.5 , HORVU4Hr1G078590.4 , HORVU4Hr1G078590.3 , HORVU4Hr1G078590.2 , HORVU4Hr1G078590.1 , HORVU4Hr1G078590.9 , HORVU4Hr1G078590.8 , HORVU2Hr1G079230.7 , HORVU2Hr1G079230.6 , HORVU2Hr1G079230.5 , HORVU2Hr1G079230.4 , HORVU2Hr1G079230.3 , HORVU2Hr1G079230.2 , HORVU2Hr1G079230.1
Wheat TraesCS4A02G406600 , TraesCS6D02G187000 , TraesCS7D02G125700 , TraesCS4B02G306100 , TraesCS7D02G125700 , TraesCS4B02G306100 , TraesCS6A02G203500 , TraesCS4D02G304300 , TraesCS6B02G223900 , TraesCS4B02G306100 , TraesCS2A02G340100
Populus -


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cDNA sequences
Sobic.006G101700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G066200 ubiquitin fusion degradation protein, putative, expressed K14016: ubiquitin fusion degradation protein 1
2 Sobic.007G166400 mediator of RNA polymerase II transcription subunit 31, putative, expressed K15153: MED31, mediator of RNA polymerase II transcription subunit 31
3 Sobic.001G085100 expressed protein -
4 Sobic.001G080700 casein kinase II subunit alpha-2, putative, expressed K03097: casein kinase II subunit alpha
5 Sobic.009G222500 expressed protein -
6 Sobic.009G165800 G10 protein, putative, expressed K12873: BUD31, bud site selection protein 31
7 Sobic.002G192200 proteasome subunit, putative, expressed -
8 Sobic.006G049700 SAM domain family protein, expressed -
9 Sobic.001G512300 outer mitochondrial membrane porin, putative, expressed K15040: voltage-dependent anion channel protein 2
10 Sobic.004G356900 - K13025: EIF4A3, ATP-dependent RNA helicase
11 Sobic.007G167900 signal peptide peptidase domain containing protein, expressed K09598: signal peptide peptidase-like 3
12 Sobic.006G017000 WD domain, G-beta repeat domain containing protein, expressed K12862: PLRG1, PRL1, pleiotropic regulator 1
13 Sobic.010G209000 NLI interacting factor-like phosphatase, putative, expressed K18999: RNA polymerase II C-terminal domain phosphatase-like 3/4
14 Sobic.003G264200 Ser/Thr protein phosphatase family protein, putative, expressed K15498: serine/threonine-protein phosphatase 6 catalytic subunit
15 Sobic.001G392300 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12820: DHX15, pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43
16 Sobic.001G360200 novel plant SNARE 11, putative, expressed K08494: novel plant SNARE
17 Sobic.010G057900 26S protease regulatory subunit 6A, putative, expressed K03065: PSMC3, 26S proteasome regulatory subunit T5
18 Sobic.006G200600 expressed protein -
19 Sobic.008G004400 GIL1, putative, expressed -
20 Sobic.006G278700 expressed protein -


Gene co-expression network
sample Sobic006G101700 Sobic006G101700 Sobic004G066200 Sobic004G066200 Sobic006G101700--Sobic004G066200 Sobic007G166400 Sobic007G166400 Sobic006G101700--Sobic007G166400 Sobic001G085100 Sobic001G085100 Sobic006G101700--Sobic001G085100 Sobic001G080700 Sobic001G080700 Sobic006G101700--Sobic001G080700 Sobic009G222500 Sobic009G222500 Sobic006G101700--Sobic009G222500 Sobic009G165800 Sobic009G165800 Sobic006G101700--Sobic009G165800 Sobic002G192200 Sobic002G192200 Sobic006G101700--Sobic002G192200 Sobic006G049700 Sobic006G049700 Sobic006G101700--Sobic006G049700 Sobic001G512300 Sobic001G512300 Sobic006G101700--Sobic001G512300 Sobic001G356600 Sobic001G356600 Sobic004G066200--Sobic001G356600 Sobic009G228700 Sobic009G228700 Sobic004G066200--Sobic009G228700 Sobic004G066200--Sobic006G101700 Sobic004G066200--Sobic001G080700 Sobic001G392300 Sobic001G392300 Sobic004G066200--Sobic001G392300 Sobic003G352200 Sobic003G352200 Sobic004G066200--Sobic003G352200 Sobic003G248200 Sobic003G248200 Sobic004G066200--Sobic003G248200 Sobic004G353200 Sobic004G353200 Sobic004G066200--Sobic004G353200 Sobic001G091300 Sobic001G091300 Sobic004G066200--Sobic001G091300 Sobic007G166400--Sobic006G101700 Sobic003G264200 Sobic003G264200 Sobic007G166400--Sobic003G264200 Sobic007G166400--Sobic009G222500 Sobic007G166400--Sobic006G049700 Sobic007G167900 Sobic007G167900 Sobic007G166400--Sobic007G167900 Sobic007G166400--Sobic004G066200 Sobic006G044600 Sobic006G044600 Sobic007G166400--Sobic006G044600 Sobic008G153500 Sobic008G153500 Sobic007G166400--Sobic008G153500 Sobic001G114500 Sobic001G114500 Sobic007G166400--Sobic001G114500 Sobic001G085100--Sobic006G101700 Sobic001G261436 Sobic001G261436 Sobic001G085100--Sobic001G261436 Sobic006G148200 Sobic006G148200 Sobic001G085100--Sobic006G148200 Sobic001G085100--Sobic007G167900 Sobic001G206900 Sobic001G206900 Sobic001G085100--Sobic001G206900 Sobic001G047400 Sobic001G047400 Sobic001G085100--Sobic001G047400 Sobic001G085100--Sobic004G066200 Sobic001G085100--Sobic001G091300 Sobic003G012200 Sobic003G012200 Sobic001G085100--Sobic003G012200 Sobic001G080700--Sobic001G392300 Sobic001G080700--Sobic009G165800 Sobic010G251000 Sobic010G251000 Sobic001G080700--Sobic010G251000 Sobic001G080700--Sobic004G066200 Sobic001G080700--Sobic003G264200 Sobic001G080700--Sobic009G222500 Sobic001G080700--Sobic006G101700 Sobic001G332500 Sobic001G332500 Sobic001G080700--Sobic001G332500 Sobic001G007000 Sobic001G007000 Sobic001G080700--Sobic001G007000 Sobic009G075800 Sobic009G075800 Sobic009G222500--Sobic009G075800 Sobic009G222500--Sobic006G049700 Sobic009G222500--Sobic001G080700 Sobic009G222500--Sobic006G101700 Sobic009G222500--Sobic004G066200 Sobic009G222500--Sobic007G166400 Sobic010G027600 Sobic010G027600 Sobic009G222500--Sobic010G027600 Sobic009G222500--Sobic003G264200 Sobic004G235000 Sobic004G235000 Sobic009G222500--Sobic004G235000 Sobic009G165800--Sobic001G080700 Sobic009G165800--Sobic001G047400 Sobic009G165800--Sobic006G101700 Sobic002G110700 Sobic002G110700 Sobic009G165800--Sobic002G110700 Sobic003G015900 Sobic003G015900 Sobic009G165800--Sobic003G015900 Sobic010G083700 Sobic010G083700 Sobic009G165800--Sobic010G083700 Sobic009G165800--Sobic010G251000 Sobic004G121100 Sobic004G121100 Sobic009G165800--Sobic004G121100 Sobic009G165800--Sobic003G264200 Sobic002G192200--Sobic006G101700 Sobic002G192200--Sobic010G027600 Sobic002G192200--Sobic009G222500 Sobic002G192200--Sobic004G066200 Sobic002G192200--Sobic007G166400 Sobic002G192200--Sobic001G114500 Sobic001G522600 Sobic001G522600 Sobic002G192200--Sobic001G522600 Sobic002G192200--Sobic006G049700 Sobic007G225100 Sobic007G225100 Sobic002G192200--Sobic007G225100 Sobic006G049700--Sobic009G222500 Sobic006G049700--Sobic007G166400 Sobic006G049700--Sobic003G264200 Sobic006G049700--Sobic006G101700 Sobic006G049700--Sobic007G167900 Sobic004G226800 Sobic004G226800 Sobic006G049700--Sobic004G226800 Sobic006G049700--Sobic010G027600 Sobic002G113900 Sobic002G113900 Sobic006G049700--Sobic002G113900 Sobic004G356900 Sobic004G356900 Sobic006G049700--Sobic004G356900 Sobic001G512300--Sobic001G091300 Sobic001G512300--Sobic006G101700 Sobic002G281300 Sobic002G281300 Sobic001G512300--Sobic002G281300 Sobic001G512300--Sobic001G085100 Sobic009G207000 Sobic009G207000 Sobic001G512300--Sobic009G207000 Sobic001G360200 Sobic001G360200 Sobic001G512300--Sobic001G360200 Sobic009G123600 Sobic009G123600 Sobic001G512300--Sobic009G123600 Sobic001G512300--Sobic004G066200 Sobic003G007500 Sobic003G007500 Sobic001G512300--Sobic003G007500
Octagon: transcription factors


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