Gene annotation
Transcriptome id Sobic.004G356900.1
Synonym Sb04g038330, EIF4A-III
Functional annotation -
UniProt C5XWR4
Pfam PF00271 PF00270
Panther DB PTHR24031 PTHR24031:SF313
NCBI CDD -
KEGG Orthology K13025; EIF4A3, ATP-dependent RNA helicase
Gene Ontology GO:0005524; ATP binding GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT3G19760 : eukaryotic initiation factor 4A-III
RAP-DB (Rice) LOC_Os03g36930.1 : DEAD-box ATP-dependent RNA helicase, putative, expressed
MaizeGDB (Corn) Zm00025a022674 , Zm00025a032710
Brachypodium KQK02140
Barley HORVU6Hr1G094560.5 , HORVU3Hr1G050890.1 , HORVU6Hr1G094560.6 , HORVU6Hr1G094560.7 , HORVU6Hr1G094560.4 , HORVU6Hr1G094560.2 , HORVU6Hr1G094560.3 , HORVU6Hr1G094560.1
Wheat TraesCS6A02G416700 , TraesCS2D02G554300 , TraesCS2D02G554300 , TraesCS2B02G584200 , TraesCS6B02G472700 , TraesCS6D02G401900 , TraesCS2D02G553400 , TraesCS2A02G552800
Populus -


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cDNA sequences
Sobic.004G356900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G004400 GIL1, putative, expressed -
2 Sobic.004G226800 expressed protein -
3 Sobic.009G004600 transcription initiation factor IIA gamma chain, putative, expressed K03123: TFIIA2, GTF2A2, transcription initiation factor TFIIA small subunit
4 Sobic.010G193800 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
5 Sobic.010G205300 secreted salivary protein, putative, expressed -
6 Sobic.006G101700 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11842: ubiquitin carboxyl-terminal hydrolase 12/46
7 Sobic.004G232800 expressed protein -
8 Sobic.002G268400 expressed protein -
9 Sobic.003G239800 expressed protein K11878: PSMG4, proteasome assembly chaperone 4
10 Sobic.001G360200 novel plant SNARE 11, putative, expressed K08494: novel plant SNARE
11 Sobic.001G085100 expressed protein -
12 Sobic.007G166100 no apical meristem protein, putative, expressed -
13 Sobic.002G113900 lipid binding protein, putative, expressed -
14 Sobic.006G049700 SAM domain family protein, expressed -
15 Sobic.007G187200 zinc finger, C3HC4 type domain containing protein, expressed -
16 Sobic.001G143500 pleckstrin homology domain-containing protein, putative, expressed -
17 Sobic.009G133400 mTERF domain containing protein, expressed K15032: mTERF domain-containing protein, mitochondrial
18 Sobic.006G270900 acyl-CoA-binding domain-containing protein 6, putative, expressed -
19 Sobic.001G512300 outer mitochondrial membrane porin, putative, expressed K15040: voltage-dependent anion channel protein 2
20 Sobic.002G281300 trafficking protein particle complex subunit, putative, expressed -


Gene co-expression network
sample Sobic004G356900 Sobic004G356900 Sobic008G004400 Sobic008G004400 Sobic004G356900--Sobic008G004400 Sobic004G226800 Sobic004G226800 Sobic004G356900--Sobic004G226800 Sobic009G004600 Sobic009G004600 Sobic004G356900--Sobic009G004600 Sobic010G193800 Sobic010G193800 Sobic004G356900--Sobic010G193800 Sobic010G205300 Sobic010G205300 Sobic004G356900--Sobic010G205300 Sobic006G101700 Sobic006G101700 Sobic004G356900--Sobic006G101700 Sobic004G232800 Sobic004G232800 Sobic004G356900--Sobic004G232800 Sobic002G268400 Sobic002G268400 Sobic004G356900--Sobic002G268400 Sobic003G239800 Sobic003G239800 Sobic004G356900--Sobic003G239800 Sobic008G004400--Sobic004G356900 Sobic006G278700 Sobic006G278700 Sobic008G004400--Sobic006G278700 Sobic001G143500 Sobic001G143500 Sobic008G004400--Sobic001G143500 Sobic007G053500 Sobic007G053500 Sobic008G004400--Sobic007G053500 Sobic008G004400--Sobic006G101700 Sobic003G439800 Sobic003G439800 Sobic008G004400--Sobic003G439800 Sobic002G281300 Sobic002G281300 Sobic008G004400--Sobic002G281300 Sobic005G004200 Sobic005G004200 Sobic008G004400--Sobic005G004200 Sobic001G360200 Sobic001G360200 Sobic008G004400--Sobic001G360200 Sobic004G226800--Sobic004G356900 Sobic006G049700 Sobic006G049700 Sobic004G226800--Sobic006G049700 Sobic002G256300 Sobic002G256300 Sobic004G226800--Sobic002G256300 Sobic002G113900 Sobic002G113900 Sobic004G226800--Sobic002G113900 Sobic004G226800--Sobic010G193800 Sobic003G226500 Sobic003G226500 Sobic004G226800--Sobic003G226500 Sobic001G459100 Sobic001G459100 Sobic004G226800--Sobic001G459100 Sobic002G204000 Sobic002G204000 Sobic004G226800--Sobic002G204000 Sobic004G226800--Sobic004G232800 Sobic002G400000 Sobic002G400000 Sobic009G004600--Sobic002G400000 Sobic009G004600--Sobic004G356900 Sobic003G217400 Sobic003G217400 Sobic009G004600--Sobic003G217400 Sobic009G198500 Sobic009G198500 Sobic009G004600--Sobic009G198500 Sobic001G263000 Sobic001G263000 Sobic009G004600--Sobic001G263000 Sobic001G314500 Sobic001G314500 Sobic009G004600--Sobic001G314500 Sobic009G004600--Sobic002G113900 Sobic009G004600--Sobic010G205300 Sobic007G168600 Sobic007G168600 Sobic009G004600--Sobic007G168600 Sobic003G420700 Sobic003G420700 Sobic010G193800--Sobic003G420700 Sobic010G193800--Sobic004G356900 Sobic010G193800--Sobic002G256300 Sobic001G532100 Sobic001G532100 Sobic010G193800--Sobic001G532100 Sobic006G225300 Sobic006G225300 Sobic010G193800--Sobic006G225300 Sobic007G203700 Sobic007G203700 Sobic010G193800--Sobic007G203700 Sobic001G439600 Sobic001G439600 Sobic010G193800--Sobic001G439600 Sobic004G141700 Sobic004G141700 Sobic010G193800--Sobic004G141700 Sobic009G246950 Sobic009G246950 Sobic010G193800--Sobic009G246950 Sobic010G205300--Sobic004G232800 Sobic003G349300 Sobic003G349300 Sobic010G205300--Sobic003G349300 Sobic010G205300--Sobic007G168600 Sobic001G502200 Sobic001G502200 Sobic010G205300--Sobic001G502200 Sobic010G205300--Sobic002G281300 Sobic010G205300--Sobic004G356900 Sobic003G261400 Sobic003G261400 Sobic010G205300--Sobic003G261400 Sobic004G194900 Sobic004G194900 Sobic010G205300--Sobic004G194900 Sobic001G067900 Sobic001G067900 Sobic010G205300--Sobic001G067900 Sobic004G066200 Sobic004G066200 Sobic006G101700--Sobic004G066200 Sobic007G166400 Sobic007G166400 Sobic006G101700--Sobic007G166400 Sobic001G085100 Sobic001G085100 Sobic006G101700--Sobic001G085100 Sobic001G080700 Sobic001G080700 Sobic006G101700--Sobic001G080700 Sobic009G222500 Sobic009G222500 Sobic006G101700--Sobic009G222500 Sobic009G165800 Sobic009G165800 Sobic006G101700--Sobic009G165800 Sobic002G192200 Sobic002G192200 Sobic006G101700--Sobic002G192200 Sobic006G101700--Sobic006G049700 Sobic001G512300 Sobic001G512300 Sobic006G101700--Sobic001G512300 Sobic004G232800--Sobic010G205300 Sobic004G232800--Sobic004G356900 Sobic004G232800--Sobic009G004600 Sobic004G232800--Sobic006G049700 Sobic009G192000 Sobic009G192000 Sobic004G232800--Sobic009G192000 Sobic010G057900 Sobic010G057900 Sobic004G232800--Sobic010G057900 Sobic004G232800--Sobic003G349300 Sobic004G232800--Sobic004G226800 Sobic004G232800--Sobic002G113900 Sobic002G268400--Sobic010G057900 Sobic001G152000 Sobic001G152000 Sobic002G268400--Sobic001G152000 Sobic004G074300 Sobic004G074300 Sobic002G268400--Sobic004G074300 Sobic006G252100 Sobic006G252100 Sobic002G268400--Sobic006G252100 Sobic009G033900 Sobic009G033900 Sobic002G268400--Sobic009G033900 Sobic006G270900 Sobic006G270900 Sobic002G268400--Sobic006G270900 Sobic006G183000 Sobic006G183000 Sobic002G268400--Sobic006G183000 Sobic002G268400--Sobic004G356900 Sobic002G268400--Sobic003G439800 Sobic003G239800--Sobic004G356900 Sobic003G239800--Sobic009G004600 Sobic003G239800--Sobic010G205300 Sobic009G228800 Sobic009G228800 Sobic003G239800--Sobic009G228800 Sobic003G239800--Sobic004G232800 Sobic006G280600 Sobic006G280600 Sobic003G239800--Sobic006G280600 Sobic002G341800 Sobic002G341800 Sobic003G239800--Sobic002G341800 Sobic004G310500 Sobic004G310500 Sobic003G239800--Sobic004G310500 Sobic007G188300 Sobic007G188300 Sobic003G239800--Sobic007G188300
Octagon: transcription factors


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