Gene annotation
Transcriptome id Sobic.009G004600.1
Synonym Sb09g000610
Functional annotation transcription initiation factor IIA gamma chain, putative, expressed
UniProt C5YY13
Pfam PF02268 PF02751
Panther DB PTHR10966
NCBI CDD KOG3463; Transcription initiation factor IIA, gamma subunit
KEGG Orthology K03123; TFIIA2, GTF2A2, transcription initiation factor TFIIA small subunit
Gene Ontology GO:0006367; transcription initiation from RNA polymerase II promoter GO:0005672transcription factor TFIIA complex


Orthologs (automatic annotation)
TAIR AT4G24440 : transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S)
RAP-DB (Rice) LOC_Os05g01710.3 : transcription initiation factor IIA gamma chain, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQK08070
Barley HORVU1Hr1G003460.1 , HORVU1Hr1G003460.2 , HORVU3Hr1G098510.1 , HORVU3Hr1G021970.10 , HORVU4Hr1G054350.1 , HORVU3Hr1G021970.23 , HORVU3Hr1G021970.27 , HORVU3Hr1G021970.26 , HORVU3Hr1G021970.25 , HORVU3Hr1G021970.24 , HORVU3Hr1G021970.28
Wheat TraesCS1A02G024500 , TraesCS1D02G024600
Populus -


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cDNA sequences
Sobic.009G004600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G400000 MBTB14 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
2 Sobic.004G356900 - K13025: EIF4A3, ATP-dependent RNA helicase
3 Sobic.003G217400 zinc finger, C3HC4 type family protein, expressed -
4 Sobic.009G198500 ras-related protein, putative, expressed K07897: Ras-related protein Rab-7A
5 Sobic.001G263000 membrane associated DUF588 domain containing protein, putative, expressed -
6 Sobic.001G314500 ubiquitin-conjugating enzyme, putative, expressed K10577: UBE2I, ubiquitin-conjugating enzyme E2 I
7 Sobic.002G113900 lipid binding protein, putative, expressed -
8 Sobic.010G205300 secreted salivary protein, putative, expressed -
9 Sobic.007G168600 vesicle-associated membrane protein 727, putative, expressed K08511: vesicle-associated membrane protein 72
10 Sobic.007G166100 no apical meristem protein, putative, expressed -
11 Sobic.007G203700 SNF1-related protein kinase regulatory subunit beta-2, putative, expressed K07199: 5'-AMP-activated protein kinase, regulatory beta subunit
12 Sobic.001G428100 S-RNase-binding protein, putative, expressed K19042: E3 ubiquitin-protein ligase BOI and related proteins
13 Sobic.004G060600 expressed protein K13105: proline-rich protein PRCC
14 Sobic.001G175800 expressed protein -
15 Sobic.006G054500 membrane-anchored ubiquitin-fold protein, putative, expressed -
16 Sobic.001G395400 ubiquitin-conjugating enzyme, putative, expressed K10578: UBE2J1, NCUBE1, ubiquitin-conjugating enzyme E2 J1
17 Sobic.004G232800 expressed protein -
18 Sobic.001G136900 ubiquitin-conjugating enzyme E2 W, putative, expressed K10688: UBE2W, ubiquitin-conjugating enzyme E2 W
19 Sobic.009G165800 G10 protein, putative, expressed K12873: BUD31, bud site selection protein 31
20 Sobic.004G348900 expressed protein -


Gene co-expression network
sample Sobic009G004600 Sobic009G004600 Sobic002G400000 Sobic002G400000 Sobic009G004600--Sobic002G400000 Sobic004G356900 Sobic004G356900 Sobic009G004600--Sobic004G356900 Sobic003G217400 Sobic003G217400 Sobic009G004600--Sobic003G217400 Sobic009G198500 Sobic009G198500 Sobic009G004600--Sobic009G198500 Sobic001G263000 Sobic001G263000 Sobic009G004600--Sobic001G263000 Sobic001G314500 Sobic001G314500 Sobic009G004600--Sobic001G314500 Sobic002G113900 Sobic002G113900 Sobic009G004600--Sobic002G113900 Sobic010G205300 Sobic010G205300 Sobic009G004600--Sobic010G205300 Sobic007G168600 Sobic007G168600 Sobic009G004600--Sobic007G168600 Sobic002G400000--Sobic007G168600 Sobic003G077900 Sobic003G077900 Sobic002G400000--Sobic003G077900 Sobic002G400000--Sobic009G198500 Sobic004G130900 Sobic004G130900 Sobic002G400000--Sobic004G130900 Sobic001G433400 Sobic001G433400 Sobic002G400000--Sobic001G433400 Sobic001G395400 Sobic001G395400 Sobic002G400000--Sobic001G395400 Sobic004G327300 Sobic004G327300 Sobic002G400000--Sobic004G327300 Sobic002G400000--Sobic009G004600 Sobic010G000900 Sobic010G000900 Sobic002G400000--Sobic010G000900 Sobic008G004400 Sobic008G004400 Sobic004G356900--Sobic008G004400 Sobic004G226800 Sobic004G226800 Sobic004G356900--Sobic004G226800 Sobic004G356900--Sobic009G004600 Sobic010G193800 Sobic010G193800 Sobic004G356900--Sobic010G193800 Sobic004G356900--Sobic010G205300 Sobic006G101700 Sobic006G101700 Sobic004G356900--Sobic006G101700 Sobic004G232800 Sobic004G232800 Sobic004G356900--Sobic004G232800 Sobic002G268400 Sobic002G268400 Sobic004G356900--Sobic002G268400 Sobic003G239800 Sobic003G239800 Sobic004G356900--Sobic003G239800 Sobic003G261500 Sobic003G261500 Sobic003G217400--Sobic003G261500 Sobic003G217400--Sobic003G077900 Sobic003G217400--Sobic009G004600 Sobic003G217400--Sobic002G400000 Sobic003G217400--Sobic001G314500 Sobic003G217400--Sobic010G000900 Sobic003G217400--Sobic009G198500 Sobic001G051200 Sobic001G051200 Sobic003G217400--Sobic001G051200 Sobic003G217400--Sobic007G168600 Sobic004G272300 Sobic004G272300 Sobic009G198500--Sobic004G272300 Sobic003G124800 Sobic003G124800 Sobic009G198500--Sobic003G124800 Sobic009G198500--Sobic002G400000 Sobic009G198500--Sobic007G168600 Sobic002G078400 Sobic002G078400 Sobic009G198500--Sobic002G078400 Sobic004G300900 Sobic004G300900 Sobic009G198500--Sobic004G300900 Sobic001G005900 Sobic001G005900 Sobic009G198500--Sobic001G005900 Sobic007G096700 Sobic007G096700 Sobic009G198500--Sobic007G096700 Sobic006G212100 Sobic006G212100 Sobic009G198500--Sobic006G212100 Sobic001G263000--Sobic009G004600 Sobic006G244700 Sobic006G244700 Sobic001G263000--Sobic006G244700 Sobic009G033900 Sobic009G033900 Sobic001G263000--Sobic009G033900 Sobic002G209400 Sobic002G209400 Sobic001G263000--Sobic002G209400 Sobic001G263000--Sobic002G268400 Sobic002G039000 Sobic002G039000 Sobic001G263000--Sobic002G039000 Sobic004G074300 Sobic004G074300 Sobic001G263000--Sobic004G074300 Sobic001G263000--Sobic004G356900 Sobic010G057900 Sobic010G057900 Sobic001G263000--Sobic010G057900 Sobic001G314500--Sobic006G212100 Sobic001G314500--Sobic009G198500 Sobic001G314500--Sobic007G168600 Sobic001G388200 Sobic001G388200 Sobic001G314500--Sobic001G388200 Sobic006G232200 Sobic006G232200 Sobic001G314500--Sobic006G232200 Sobic001G054200 Sobic001G054200 Sobic001G314500--Sobic001G054200 Sobic001G314500--Sobic009G004600 Sobic001G314500--Sobic010G205300 Sobic001G314500--Sobic003G217400 Sobic006G270900 Sobic006G270900 Sobic002G113900--Sobic006G270900 Sobic002G113900--Sobic009G004600 Sobic002G113900--Sobic004G226800 Sobic006G049700 Sobic006G049700 Sobic002G113900--Sobic006G049700 Sobic002G113900--Sobic004G356900 Sobic004G301900 Sobic004G301900 Sobic002G113900--Sobic004G301900 Sobic007G019800 Sobic007G019800 Sobic002G113900--Sobic007G019800 Sobic004G104900 Sobic004G104900 Sobic002G113900--Sobic004G104900 Sobic002G113900--Sobic002G268400 Sobic010G205300--Sobic004G232800 Sobic003G349300 Sobic003G349300 Sobic010G205300--Sobic003G349300 Sobic010G205300--Sobic007G168600 Sobic001G502200 Sobic001G502200 Sobic010G205300--Sobic001G502200 Sobic002G281300 Sobic002G281300 Sobic010G205300--Sobic002G281300 Sobic010G205300--Sobic004G356900 Sobic003G261400 Sobic003G261400 Sobic010G205300--Sobic003G261400 Sobic004G194900 Sobic004G194900 Sobic010G205300--Sobic004G194900 Sobic001G067900 Sobic001G067900 Sobic010G205300--Sobic001G067900 Sobic007G168600--Sobic002G400000 Sobic007G168600--Sobic009G198500 Sobic004G086600 Sobic004G086600 Sobic007G168600--Sobic004G086600 Sobic007G168600--Sobic001G502200 Sobic007G168600--Sobic003G077900 Sobic007G168600--Sobic010G205300 Sobic007G168600--Sobic003G124800 Sobic001G461900 Sobic001G461900 Sobic007G168600--Sobic001G461900 Sobic007G168600--Sobic001G314500
Octagon: transcription factors


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